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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 221, 373 |
| AccBSI | CCGCTC | 1 cut(s) | 111 |
| AcoI | YGGCCR | 2 cut(s) | 507, 531 |
| AcsI | RAATTY | 1 cut(s) | 558 |
| AcuI | CTGAAG | 1 cut(s) | 17 |
| AcyI | GRCGYC | 1 cut(s) | 242 |
| AfaI | GTAC | 1 cut(s) | 421 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 97, 287, 327, 363, 512, 536 |
| AgsI | TTSAA | 1 cut(s) | 217 |
| AjnI | CCWGG | 3 cut(s) | 280, 307, 345 |
| AluBI | AGCT | 3 cut(s) | 167, 211, 318 |
| AluI | AGCT | 3 cut(s) | 167, 211, 318 |
| Alw21I | GWGCWC | 1 cut(s) | 320 |
| AoxI | GGCC | 4 cut(s) | 399, 425, 507, 531 |
| ApeKI | GCWGC | 1 cut(s) | 86 |
| ApoI | RAATTY | 1 cut(s) | 558 |
| AspLEI | GCGC | 1 cut(s) | 494 |
| AspS9I | GGNCC | 4 cut(s) | 291, 399, 425, 435 |
| AsuC2I | CCSGG | 1 cut(s) | 247 |
| AsuHPI | GGTGA | 4 cut(s) | 76, 350, 527, 551 |
| AsuNHI | GCTAGC | 1 cut(s) | 254 |
| AvaII | GGWCC | 2 cut(s) | 291, 435 |
| BaeGI | GKGCMC | 1 cut(s) | 378 |
| BanI | GGYRCC | 2 cut(s) | 221, 373 |
| BanII | GRGCYC | 1 cut(s) | 320 |
| Bbv12I | GWGCWC | 1 cut(s) | 320 |
| BbvI | GCAGC | 1 cut(s) | 73 |
| BccI | CCATC | 1 cut(s) | 272 |
| BceAI | ACGGC | 1 cut(s) | 256 |
| BciT130I | CCWGG | 3 cut(s) | 282, 309, 347 |
| BcnI | CCSGG | 1 cut(s) | 247 |
| BfaI | CTAG | 2 cut(s) | 255, 450 |
| BisI | GCNGC | 5 cut(s) | 6, 87, 153, 180, 414 |
| BlsI | GCNGC | 5 cut(s) | 7, 88, 154, 181, 415 |
| Bme1390I | CCNGG | 4 cut(s) | 247, 282, 309, 347 |
| Bme18I | GGWCC | 2 cut(s) | 291, 435 |
| BmgT120I | GGNCC | 4 cut(s) | 291, 399, 425, 435 |
| BmiI | GGNNCC | 5 cut(s) | 223, 292, 375, 436, 469 |
| BmrFI | CCNGG | 4 cut(s) | 247, 282, 309, 347 |
| BmrI | ACTGGG | 1 cut(s) | 336 |
| BmsI | GCATC | 1 cut(s) | 124 |
| BmtI | GCTAGC | 1 cut(s) | 258 |
| BmuI | ACTGGG | 1 cut(s) | 336 |
| BpmI | CTGGAG | 2 cut(s) | 116, 304 |
| Bpu10I | CCTNAGC | 1 cut(s) | 9 |
| BpuEI | CTTGAG | 1 cut(s) | 334 |
| BpuMI | CCSGG | 1 cut(s) | 247 |
| BsaHI | GRCGYC | 1 cut(s) | 242 |
| BsaJI | CCNNGG | 7 cut(s) | 60, 280, 281, 294, 387, 510, 534 |
| BsaWI | WCCGGW | 1 cut(s) | 370 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 97, 287, 327, 363, 512, 536 |
| Bse118I | RCCGGY | 2 cut(s) | 505, 529 |
| Bse1I | ACTGG | 2 cut(s) | 99, 331 |
| BseBI | CCWGG | 3 cut(s) | 282, 309, 347 |
| BseDI | CCNNGG | 7 cut(s) | 60, 280, 281, 294, 387, 510, 534 |
| BseGI | GGATG | 2 cut(s) | 139, 264 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 97, 287, 327, 363, 512, 536 |
| BseNI | ACTGG | 2 cut(s) | 99, 331 |
| BseRI | GAGGAG | 1 cut(s) | 533 |
| BseSI | GKGCMC | 1 cut(s) | 378 |
| BseX3I | CGGCCG | 1 cut(s) | 531 |
| BseXI | GCAGC | 1 cut(s) | 73 |
| BseYI | CCCAGC | 1 cut(s) | 360 |
| Bsh1285I | CGRYCG | 1 cut(s) | 534 |
| BshFI | GGCC | 4 cut(s) | 401, 427, 509, 533 |
| BshNI | GGYRCC | 2 cut(s) | 221, 373 |
| BsiEI | CGRYCG | 1 cut(s) | 534 |
| BsiHKAI | GWGCWC | 1 cut(s) | 320 |
| BsiSI | CCGG | 5 cut(s) | 246, 371, 428, 506, 530 |
| BslFI | GGGAC | 1 cut(s) | 448 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 97, 287, 327, 363, 512, 536 |
| BsmFI | GGGAC | 1 cut(s) | 448 |
| BsmI | GAATGC | 1 cut(s) | 463 |
| BsnI | GGCC | 4 cut(s) | 401, 427, 509, 533 |
| Bsp1286I | GDGCHC | 2 cut(s) | 320, 378 |
| Bsp143I | GATC | 1 cut(s) | 472 |
| BspANI | GGCC | 4 cut(s) | 401, 427, 509, 533 |
| BspLI | GGNNCC | 5 cut(s) | 223, 292, 375, 436, 469 |
| BspOI | GCTAGC | 1 cut(s) | 258 |
| BspT107I | GGYRCC | 2 cut(s) | 221, 373 |
| BsrBI | CCGCTC | 1 cut(s) | 111 |
| BsrFI | RCCGGY | 2 cut(s) | 505, 529 |
| BsrI | ACTGG | 2 cut(s) | 99, 331 |
| BssAI | RCCGGY | 2 cut(s) | 505, 529 |
| BssECI | CCNNGG | 7 cut(s) | 60, 280, 281, 294, 387, 510, 534 |
| BssMI | GATC | 1 cut(s) | 472 |
| BssNI | GRCGYC | 1 cut(s) | 242 |
| BssT1I | CCWWGG | 1 cut(s) | 510 |
| Bst2UI | CCWGG | 3 cut(s) | 282, 309, 347 |
| Bst4CI | ACNGT | 1 cut(s) | 147 |
| Bst6I | CTCTTC | 1 cut(s) | 62 |
| BstACI | GRCGYC | 1 cut(s) | 242 |
| BstC8I | GCNNGC | 3 cut(s) | 256, 507, 531 |
| BstDEI | CTNAG | 1 cut(s) | 9 |
| BstF5I | GGATG | 2 cut(s) | 139, 264 |
| BstHHI | GCGC | 1 cut(s) | 494 |
| BstKTI | GATC | 1 cut(s) | 475 |
| BstMBI | GATC | 1 cut(s) | 472 |
| BstMCI | CGRYCG | 1 cut(s) | 534 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 56, 134, 185 |
| BstNI | CCWGG | 3 cut(s) | 282, 309, 347 |
| BstSCI | CCNGG | 4 cut(s) | 245, 280, 307, 345 |
| BstSLI | GKGCMC | 1 cut(s) | 378 |
| BstV1I | GCAGC | 1 cut(s) | 73 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 409 |
| BstZI | CGGCCG | 1 cut(s) | 531 |
| BsuRI | GGCC | 4 cut(s) | 401, 427, 509, 533 |
| BtsCI | GGATG | 2 cut(s) | 139, 264 |
| BtsIMutI | CAGTG | 1 cut(s) | 324 |
| Cac8I | GCNNGC | 3 cut(s) | 256, 507, 531 |
| CfoI | GCGC | 1 cut(s) | 494 |
| Cfr10I | RCCGGY | 2 cut(s) | 505, 529 |
| Cfr13I | GGNCC | 4 cut(s) | 291, 399, 425, 435 |
| CseI | GACGC | 1 cut(s) | 231 |
| Csp6I | GTAC | 1 cut(s) | 420 |
| CviAII | CATG | 3 cut(s) | 409, 464, 487 |
| CviQI | GTAC | 1 cut(s) | 420 |
| DdeI | CTNAG | 1 cut(s) | 9 |
| DpnI | GATC | 1 cut(s) | 474 |
| DpnII | GATC | 1 cut(s) | 472 |
| DraI | TTTAAA | 1 cut(s) | 142 |
| EaeI | YGGCCR | 2 cut(s) | 507, 531 |
| EagI | CGGCCG | 1 cut(s) | 531 |
| Eam1104I | CTCTTC | 1 cut(s) | 62 |
| EarI | CTCTTC | 1 cut(s) | 62 |
| EciI | GGCGGA | 1 cut(s) | 116 |
| Ecl136II | GAGCTC | 1 cut(s) | 318 |
| EclXI | CGGCCG | 1 cut(s) | 531 |
| Eco130I | CCWWGG | 1 cut(s) | 510 |
| Eco24I | GRGCYC | 1 cut(s) | 320 |
| Eco47I | GGWCC | 2 cut(s) | 291, 435 |
| Eco52I | CGGCCG | 1 cut(s) | 531 |
| Eco53kI | GAGCTC | 1 cut(s) | 318 |
| Eco57I | CTGAAG | 1 cut(s) | 17 |
| EcoICRI | GAGCTC | 1 cut(s) | 318 |
| EcoO109I | RGGNCCY | 1 cut(s) | 291 |
| EcoRII | CCWGG | 3 cut(s) | 280, 307, 345 |
| EcoT14I | CCWWGG | 1 cut(s) | 510 |
| EcoT38I | GRGCYC | 1 cut(s) | 320 |
| ErhI | CCWWGG | 1 cut(s) | 510 |
| FaeI | CATG | 3 cut(s) | 412, 467, 490 |
| FaiI | YATR | 5 cut(s) | 206, 410, 443, 465, 488 |
| FaqI | GGGAC | 1 cut(s) | 448 |
| FatI | CATG | 3 cut(s) | 408, 463, 486 |
| FauI | CCCGC | 1 cut(s) | 281 |
| Fnu4HI | GCNGC | 5 cut(s) | 6, 87, 153, 180, 414 |
| FokI | GGATG | 2 cut(s) | 146, 251 |
| FriOI | GRGCYC | 1 cut(s) | 320 |
| Fsp4HI | GCNGC | 5 cut(s) | 6, 87, 153, 180, 414 |
| FspBI | CTAG | 2 cut(s) | 255, 450 |
| GlaI | GCGC | 1 cut(s) | 493 |
| GluI | GCNGC | 5 cut(s) | 6, 87, 153, 180, 414 |
| GsaI | CCCAGC | 1 cut(s) | 364 |
| GsuI | CTGGAG | 2 cut(s) | 116, 304 |
| HaeIII | GGCC | 4 cut(s) | 401, 427, 509, 533 |
| HapII | CCGG | 5 cut(s) | 246, 371, 428, 506, 530 |
| HgaI | GACGC | 1 cut(s) | 231 |
| HhaI | GCGC | 1 cut(s) | 494 |
| Hin1I | GRCGYC | 1 cut(s) | 242 |
| Hin1II | CATG | 3 cut(s) | 412, 467, 490 |
| Hin6I | GCGC | 1 cut(s) | 492 |
| HinP1I | GCGC | 1 cut(s) | 492 |
| HindIII | AAGCTT | 1 cut(s) | 165 |
| HinfI | GANTC | 3 cut(s) | 41, 230, 367 |
| HpaII | CCGG | 5 cut(s) | 246, 371, 428, 506, 530 |
| HphI | GGTGA | 4 cut(s) | 76, 350, 527, 551 |
| Hpy188I | TCNGA | 4 cut(s) | 36, 388, 472, 477 |
| HpyAV | CCTTC | 3 cut(s) | 178, 211, 232 |
| HpyCH4III | ACNGT | 1 cut(s) | 147 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 56, 134, 185 |
| HpyF3I | CTNAG | 1 cut(s) | 9 |
| Hsp92I | GRCGYC | 1 cut(s) | 242 |
| Hsp92II | CATG | 3 cut(s) | 412, 467, 490 |
| HspAI | GCGC | 1 cut(s) | 492 |
| KroI | GCCGGC | 2 cut(s) | 505, 529 |
| KroNI | GCCGGC | 2 cut(s) | 507, 531 |
| Kzo9I | GATC | 1 cut(s) | 472 |
| LmnI | GCTCC | 3 cut(s) | 323, 473, 520 |
| Lsp1109I | GCAGC | 1 cut(s) | 73 |
| LweI | GCATC | 1 cut(s) | 124 |
| MaeI | CTAG | 2 cut(s) | 255, 450 |
| MalI | GATC | 1 cut(s) | 474 |
| MbiI | CCGCTC | 1 cut(s) | 111 |
| MboI | GATC | 1 cut(s) | 472 |
| MboII | GAAGA | 2 cut(s) | 23, 79 |
| MhlI | GDGCHC | 2 cut(s) | 320, 378 |
| MluCI | AATT | 1 cut(s) | 558 |
| MlyI | GAGTC | 3 cut(s) | 35, 224, 361 |
| MroNI | GCCGGC | 2 cut(s) | 505, 529 |
| MseI | TTAA | 2 cut(s) | 15, 141 |
| MspA1I | CMGCKG | 2 cut(s) | 128, 364 |
| MspI | CCGG | 5 cut(s) | 246, 371, 428, 506, 530 |
| MspR9I | CCNGG | 4 cut(s) | 247, 282, 309, 347 |
| Mva1269I | GAATGC | 1 cut(s) | 463 |
| MvaI | CCWGG | 3 cut(s) | 282, 309, 347 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 56, 134, 185 |
| NaeI | GCCGGC | 2 cut(s) | 507, 531 |
| NciI | CCSGG | 1 cut(s) | 247 |
| NdeII | GATC | 1 cut(s) | 472 |
| NgoMIV | GCCGGC | 2 cut(s) | 505, 529 |
| NheI | GCTAGC | 1 cut(s) | 254 |
| NlaIII | CATG | 3 cut(s) | 412, 467, 490 |
| NlaIV | GGNNCC | 5 cut(s) | 223, 292, 375, 436, 469 |
| NmeAIII | GCCGAG | 4 cut(s) | 85, 212, 275, 559 |
| PasI | CCCWGGG | 1 cut(s) | 281 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 179, 239 |
| PctI | GAATGC | 1 cut(s) | 463 |
| PdiI | GCCGGC | 2 cut(s) | 507, 531 |
| PflFI | GACNNNGTC | 1 cut(s) | 44 |
| PkrI | GCNGC | 5 cut(s) | 7, 88, 154, 181, 415 |
| PleI | GAGTC | 3 cut(s) | 35, 224, 361 |
| PpsI | GAGTC | 3 cut(s) | 35, 224, 361 |
| PpuMI | RGGWCCY | 1 cut(s) | 291 |
| Psp124BI | GAGCTC | 1 cut(s) | 320 |
| Psp5II | RGGWCCY | 1 cut(s) | 291 |
| Psp6I | CCWGG | 3 cut(s) | 280, 307, 345 |
| PspFI | CCCAGC | 1 cut(s) | 360 |
| PspGI | CCWGG | 3 cut(s) | 280, 307, 345 |
| PspN4I | GGNNCC | 5 cut(s) | 223, 292, 375, 436, 469 |
| PspPI | GGNCC | 4 cut(s) | 291, 399, 425, 435 |
| PspPPI | RGGWCCY | 1 cut(s) | 291 |
| PsyI | GACNNNGTC | 1 cut(s) | 44 |
| RsaI | GTAC | 1 cut(s) | 421 |
| RsaNI | GTAC | 1 cut(s) | 420 |
| SacI | GAGCTC | 1 cut(s) | 320 |
| SaqAI | TTAA | 2 cut(s) | 15, 141 |
| SatI | GCNGC | 5 cut(s) | 6, 87, 153, 180, 414 |
| Sau3AI | GATC | 1 cut(s) | 472 |
| Sau96I | GGNCC | 4 cut(s) | 291, 399, 425, 435 |
| SchI | GAGTC | 3 cut(s) | 35, 224, 361 |
| ScrFI | CCNGG | 4 cut(s) | 247, 282, 309, 347 |
| SduI | GDGCHC | 2 cut(s) | 320, 378 |
| SetI | ASST | 6 cut(s) | 15, 66, 169, 213, 320, 393 |
| SfaNI | GCATC | 1 cut(s) | 124 |
| SinI | GGWCC | 2 cut(s) | 291, 435 |
| SmlI | CTYRAG | 1 cut(s) | 313 |
| SmoI | CTYRAG | 1 cut(s) | 313 |
| Sse9I | AATT | 1 cut(s) | 558 |
| SspMI | CTAG | 2 cut(s) | 255, 450 |
| SstI | GAGCTC | 1 cut(s) | 320 |
| StyD4I | CCNGG | 4 cut(s) | 245, 280, 307, 345 |
| StyI | CCWWGG | 1 cut(s) | 510 |
| TaaI | ACNGT | 1 cut(s) | 147 |
| TasI | AATT | 1 cut(s) | 558 |
| TauI | GCSGC | 4 cut(s) | 8, 155, 182, 416 |
| Tru1I | TTAA | 2 cut(s) | 15, 141 |
| Tru9I | TTAA | 2 cut(s) | 15, 141 |
| TscAI | CASTG | 1 cut(s) | 331 |
| TseI | GCWGC | 1 cut(s) | 86 |
| TspGWI | ACGGA | 1 cut(s) | 188 |
| TspRI | CASTG | 1 cut(s) | 331 |
| Tth111I | GACNNNGTC | 1 cut(s) | 44 |
| VpaK11BI | GGWCC | 2 cut(s) | 291, 435 |
| XapI | RAATTY | 1 cut(s) | 558 |
| XspI | CTAG | 2 cut(s) | 255, 450 |