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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 493 |
| AccI | GTMKAC | 1 cut(s) | 75 |
| AccII | CGCG | 2 cut(s) | 286, 391 |
| AcoI | YGGCCR | 3 cut(s) | 532, 595, 790 |
| AcuI | CTGAAG | 2 cut(s) | 74, 490 |
| AdeI | CACNNNGTG | 1 cut(s) | 202 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 237, 302, 667, 850 |
| AgsI | TTSAA | 2 cut(s) | 682, 739 |
| AjnI | CCWGG | 2 cut(s) | 327, 765 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 11, 43, 674, 706, 737, 769 |
| AleI | CACNNNNGTG | 1 cut(s) | 344 |
| AluBI | AGCT | 8 cut(s) | 115, 182, 311, 520, 585, 709, 733, 775 |
| AluI | AGCT | 8 cut(s) | 115, 182, 311, 520, 585, 709, 733, 775 |
| Alw21I | GWGCWC | 2 cut(s) | 117, 198 |
| Alw26I | GTCTC | 1 cut(s) | 155 |
| AoxI | GGCC | 5 cut(s) | 228, 325, 532, 595, 790 |
| ApeKI | GCWGC | 4 cut(s) | 182, 376, 413, 520 |
| AspLEI | GCGC | 2 cut(s) | 265, 391 |
| AspS9I | GGNCC | 2 cut(s) | 325, 350 |
| AsuC2I | CCSGG | 1 cut(s) | 157 |
| AsuHPI | GGTGA | 5 cut(s) | 134, 500, 567, 595, 883 |
| AvaII | GGWCC | 1 cut(s) | 350 |
| BanII | GRGCYC | 1 cut(s) | 117 |
| BauI | CACGAG | 1 cut(s) | 116 |
| BbsI | GAAGAC | 2 cut(s) | 89, 660 |
| Bbv12I | GWGCWC | 2 cut(s) | 117, 198 |
| BbvCI | CCTCAGC | 1 cut(s) | 666 |
| BbvI | GCAGC | 4 cut(s) | 169, 388, 400, 507 |
| BccI | CCATC | 4 cut(s) | 115, 536, 606, 646 |
| BciT130I | CCWGG | 2 cut(s) | 329, 767 |
| BcnI | CCSGG | 1 cut(s) | 157 |
| BcoDI | GTCTC | 1 cut(s) | 155 |
| BfaI | CTAG | 1 cut(s) | 483 |
| BfmI | CTRYAG | 1 cut(s) | 374 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 818 |
| BisI | GCNGC | 9 cut(s) | 45, 183, 284, 335, 377, 414, 521, 535, 696 |
| BlsI | GCNGC | 9 cut(s) | 46, 184, 285, 336, 378, 415, 522, 536, 697 |
| Bme1390I | CCNGG | 3 cut(s) | 157, 329, 767 |
| Bme18I | GGWCC | 1 cut(s) | 350 |
| BmgT120I | GGNCC | 2 cut(s) | 325, 350 |
| BmiI | GGNNCC | 4 cut(s) | 294, 333, 351, 435 |
| BmrFI | CCNGG | 3 cut(s) | 157, 329, 767 |
| BmsI | GCATC | 3 cut(s) | 117, 157, 470 |
| BoxI | GACNNNNGTC | 1 cut(s) | 71 |
| BpiI | GAAGAC | 2 cut(s) | 89, 660 |
| BpmI | CTGGAG | 1 cut(s) | 350 |
| Bpu10I | CCTNAGC | 1 cut(s) | 666 |
| BpuMI | CCSGG | 1 cut(s) | 157 |
| BsaJI | CCNNGG | 8 cut(s) | 156, 201, 231, 284, 342, 765, 813, 867 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 23, 53 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 237, 302, 667, 850 |
| BseBI | CCWGG | 2 cut(s) | 329, 767 |
| BseDI | CCNNGG | 8 cut(s) | 156, 201, 231, 284, 342, 765, 813, 867 |
| BseGI | GGATG | 3 cut(s) | 547, 638, 784 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 237, 302, 667, 850 |
| BseMII | CTCAG | 1 cut(s) | 657 |
| BseX3I | CGGCCG | 1 cut(s) | 532 |
| BseXI | GCAGC | 4 cut(s) | 169, 388, 400, 507 |
| BseYI | CCCAGC | 1 cut(s) | 523 |
| Bsh1236I | CGCG | 2 cut(s) | 286, 391 |
| Bsh1285I | CGRYCG | 1 cut(s) | 535 |
| BshFI | GGCC | 5 cut(s) | 230, 327, 534, 597, 792 |
| BsiEI | CGRYCG | 1 cut(s) | 535 |
| BsiHKAI | GWGCWC | 2 cut(s) | 117, 198 |
| BsiSI | CCGG | 1 cut(s) | 156 |
| BslFI | GGGAC | 2 cut(s) | 363, 559 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 237, 302, 667, 850 |
| BsmAI | GTCTC | 1 cut(s) | 155 |
| BsmFI | GGGAC | 2 cut(s) | 363, 559 |
| BsnI | GGCC | 5 cut(s) | 230, 327, 534, 597, 792 |
| Bsp1286I | GDGCHC | 2 cut(s) | 117, 198 |
| Bsp143I | GATC | 2 cut(s) | 106, 445 |
| Bsp19I | CCATGG | 1 cut(s) | 231 |
| BspANI | GGCC | 5 cut(s) | 230, 327, 534, 597, 792 |
| BspCNI | CTCAG | 1 cut(s) | 658 |
| BspFNI | CGCG | 2 cut(s) | 286, 391 |
| BspLI | GGNNCC | 4 cut(s) | 294, 333, 351, 435 |
| BspMAI | CTGCAG | 1 cut(s) | 378 |
| BsrBI | CCGCTC | 1 cut(s) | 493 |
| BssECI | CCNNGG | 8 cut(s) | 156, 201, 231, 284, 342, 765, 813, 867 |
| BssMI | GATC | 2 cut(s) | 106, 445 |
| BssSI | CACGAG | 1 cut(s) | 116 |
| BssT1I | CCWWGG | 2 cut(s) | 231, 867 |
| Bst2BI | CACGAG | 1 cut(s) | 116 |
| Bst2UI | CCWGG | 2 cut(s) | 329, 767 |
| Bst4CI | ACNGT | 5 cut(s) | 73, 280, 579, 607, 677 |
| Bst6I | CTCTTC | 2 cut(s) | 509, 828 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 467 |
| BstC8I | GCNNGC | 2 cut(s) | 243, 424 |
| BstDEI | CTNAG | 1 cut(s) | 666 |
| BstDSI | CCRYGG | 3 cut(s) | 201, 231, 284 |
| BstF5I | GGATG | 3 cut(s) | 547, 638, 784 |
| BstFNI | CGCG | 2 cut(s) | 286, 391 |
| BstHHI | GCGC | 2 cut(s) | 265, 391 |
| BstKTI | GATC | 2 cut(s) | 109, 448 |
| BstMAI | GTCTC | 1 cut(s) | 155 |
| BstMBI | GATC | 2 cut(s) | 106, 445 |
| BstMCI | CGRYCG | 1 cut(s) | 535 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 182, 419, 467, 818 |
| BstNI | CCWGG | 2 cut(s) | 329, 767 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 71 |
| BstSCI | CCNGG | 3 cut(s) | 155, 327, 765 |
| BstSFI | CTRYAG | 1 cut(s) | 374 |
| BstUI | CGCG | 2 cut(s) | 286, 391 |
| BstV1I | GCAGC | 4 cut(s) | 169, 388, 400, 507 |
| BstV2I | GAAGAC | 2 cut(s) | 89, 660 |
| BstZI | CGGCCG | 1 cut(s) | 532 |
| BsuRI | GGCC | 5 cut(s) | 230, 327, 534, 597, 792 |
| BtgI | CCRYGG | 3 cut(s) | 201, 231, 284 |
| BtsCI | GGATG | 3 cut(s) | 547, 638, 784 |
| Cac8I | GCNNGC | 2 cut(s) | 243, 424 |
| CfoI | GCGC | 2 cut(s) | 265, 391 |
| Cfr13I | GGNCC | 2 cut(s) | 325, 350 |
| Cfr42I | CCGCGG | 1 cut(s) | 287 |
| CseI | GACGC | 1 cut(s) | 58 |
| CviAII | CATG | 4 cut(s) | 173, 232, 538, 622 |
| DdeI | CTNAG | 1 cut(s) | 666 |
| DpnI | GATC | 2 cut(s) | 108, 447 |
| DpnII | GATC | 2 cut(s) | 106, 445 |
| DraIII | CACNNNGTG | 1 cut(s) | 202 |
| EaeI | YGGCCR | 3 cut(s) | 532, 595, 790 |
| EagI | CGGCCG | 1 cut(s) | 532 |
| Eam1104I | CTCTTC | 2 cut(s) | 509, 828 |
| EarI | CTCTTC | 2 cut(s) | 509, 828 |
| EciI | GGCGGA | 2 cut(s) | 631, 641 |
| Ecl136II | GAGCTC | 1 cut(s) | 115 |
| EclXI | CGGCCG | 1 cut(s) | 532 |
| Eco130I | CCWWGG | 2 cut(s) | 231, 867 |
| Eco24I | GRGCYC | 1 cut(s) | 117 |
| Eco47I | GGWCC | 1 cut(s) | 350 |
| Eco52I | CGGCCG | 1 cut(s) | 532 |
| Eco53kI | GAGCTC | 1 cut(s) | 115 |
| Eco57I | CTGAAG | 2 cut(s) | 74, 490 |
| EcoICRI | GAGCTC | 1 cut(s) | 115 |
| EcoRII | CCWGG | 2 cut(s) | 327, 765 |
| EcoT14I | CCWWGG | 2 cut(s) | 231, 867 |
| EcoT38I | GRGCYC | 1 cut(s) | 117 |
| ErhI | CCWWGG | 2 cut(s) | 231, 867 |
| FaeI | CATG | 4 cut(s) | 176, 235, 541, 625 |
| FaiI | YATR | 9 cut(s) | 38, 174, 233, 303, 468, 539, 551, 623, 846 |
| FaqI | GGGAC | 2 cut(s) | 363, 559 |
| FatI | CATG | 4 cut(s) | 172, 231, 537, 621 |
| FauI | CCCGC | 1 cut(s) | 486 |
| FblI | GTMKAC | 1 cut(s) | 75 |
| Fnu4HI | GCNGC | 9 cut(s) | 45, 183, 284, 335, 377, 414, 521, 535, 696 |
| FokI | GGATG | 3 cut(s) | 554, 625, 791 |
| FriOI | GRGCYC | 1 cut(s) | 117 |
| Fsp4HI | GCNGC | 9 cut(s) | 45, 183, 284, 335, 377, 414, 521, 535, 696 |
| FspBI | CTAG | 1 cut(s) | 483 |
| GlaI | GCGC | 2 cut(s) | 264, 390 |
| GluI | GCNGC | 9 cut(s) | 45, 183, 284, 335, 377, 414, 521, 535, 696 |
| GsaI | CCCAGC | 1 cut(s) | 527 |
| GsuI | CTGGAG | 1 cut(s) | 350 |
| HaeIII | GGCC | 5 cut(s) | 230, 327, 534, 597, 792 |
| HapII | CCGG | 1 cut(s) | 156 |
| HgaI | GACGC | 1 cut(s) | 58 |
| HhaI | GCGC | 2 cut(s) | 265, 391 |
| Hin1II | CATG | 4 cut(s) | 176, 235, 541, 625 |
| Hin6I | GCGC | 2 cut(s) | 263, 389 |
| HinP1I | GCGC | 2 cut(s) | 263, 389 |
| HincII | GTYRAC | 2 cut(s) | 76, 673 |
| HindII | GTYRAC | 2 cut(s) | 76, 673 |
| HinfI | GANTC | 2 cut(s) | 528, 629 |
| HpaII | CCGG | 1 cut(s) | 156 |
| HphI | GGTGA | 5 cut(s) | 134, 500, 567, 595, 883 |
| Hpy166II | GTNNAC | 3 cut(s) | 76, 673, 760 |
| Hpy188I | TCNGA | 3 cut(s) | 18, 106, 442 |
| Hpy188III | TCNNGA | 4 cut(s) | 110, 118, 736, 851 |
| Hpy8I | GTNNAC | 3 cut(s) | 76, 673, 760 |
| Hpy99I | CGWCG | 4 cut(s) | 14, 52, 77, 611 |
| HpyCH4III | ACNGT | 5 cut(s) | 73, 280, 579, 607, 677 |
| HpyCH4IV | ACGT | 1 cut(s) | 9 |
| HpyCH4V | TGCA | 6 cut(s) | 209, 376, 553, 568, 802, 829 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 182, 419, 467, 818 |
| HpyF3I | CTNAG | 1 cut(s) | 666 |
| HpySE526I | ACGT | 1 cut(s) | 9 |
| Hsp92II | CATG | 4 cut(s) | 176, 235, 541, 625 |
| HspAI | GCGC | 2 cut(s) | 263, 389 |
| KspI | CCGCGG | 1 cut(s) | 287 |
| Kzo9I | GATC | 2 cut(s) | 106, 445 |
| LmnI | GCTCC | 2 cut(s) | 193, 331 |
| Lsp1109I | GCAGC | 4 cut(s) | 169, 388, 400, 507 |
| LweI | GCATC | 3 cut(s) | 117, 157, 470 |
| MaeI | CTAG | 1 cut(s) | 483 |
| MaeII | ACGT | 1 cut(s) | 9 |
| MalI | GATC | 2 cut(s) | 108, 447 |
| MbiI | CCGCTC | 1 cut(s) | 493 |
| MboI | GATC | 2 cut(s) | 106, 445 |
| MboII | GAAGA | 4 cut(s) | 94, 496, 665, 845 |
| MhlI | GDGCHC | 2 cut(s) | 117, 198 |
| MluCI | AATT | 2 cut(s) | 718, 857 |
| MlyI | GAGTC | 1 cut(s) | 623 |
| MslI | CAYNNNNRTG | 1 cut(s) | 344 |
| MspA1I | CMGCKG | 2 cut(s) | 182, 286 |
| MspI | CCGG | 1 cut(s) | 156 |
| MspR9I | CCNGG | 3 cut(s) | 157, 329, 767 |
| MvaI | CCWGG | 2 cut(s) | 329, 767 |
| MvnI | CGCG | 2 cut(s) | 286, 391 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 182, 419, 467, 818 |
| NciI | CCSGG | 1 cut(s) | 157 |
| NcoI | CCATGG | 1 cut(s) | 231 |
| NdeII | GATC | 2 cut(s) | 106, 445 |
| NlaIII | CATG | 4 cut(s) | 176, 235, 541, 625 |
| NlaIV | GGNNCC | 4 cut(s) | 294, 333, 351, 435 |
| NmeAIII | GCCGAG | 4 cut(s) | 193, 496, 818, 838 |
| OliI | CACNNNNGTG | 1 cut(s) | 344 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 56 |
| PfeI | GAWTC | 1 cut(s) | 528 |
| PflFI | GACNNNGTC | 1 cut(s) | 8 |
| PkrI | GCNGC | 9 cut(s) | 46, 184, 285, 336, 378, 415, 522, 536, 697 |
| PleI | GAGTC | 1 cut(s) | 623 |
| PpsI | GAGTC | 1 cut(s) | 623 |
| PshAI | GACNNNNGTC | 1 cut(s) | 71 |
| Psp124BI | GAGCTC | 1 cut(s) | 117 |
| Psp6I | CCWGG | 2 cut(s) | 327, 765 |
| PspFI | CCCAGC | 1 cut(s) | 523 |
| PspGI | CCWGG | 2 cut(s) | 327, 765 |
| PspN4I | GGNNCC | 4 cut(s) | 294, 333, 351, 435 |
| PspPI | GGNCC | 2 cut(s) | 325, 350 |
| PstI | CTGCAG | 1 cut(s) | 378 |
| PsyI | GACNNNGTC | 1 cut(s) | 8 |
| PvuII | CAGCTG | 1 cut(s) | 182 |
| RseI | CAYNNNNRTG | 1 cut(s) | 344 |
| SacI | GAGCTC | 1 cut(s) | 117 |
| SacII | CCGCGG | 1 cut(s) | 287 |
| SalI | GTCGAC | 1 cut(s) | 74 |
| SatI | GCNGC | 9 cut(s) | 45, 183, 284, 335, 377, 414, 521, 535, 696 |
| Sau3AI | GATC | 2 cut(s) | 106, 445 |
| Sau96I | GGNCC | 2 cut(s) | 325, 350 |
| SchI | GAGTC | 1 cut(s) | 623 |
| ScrFI | CCNGG | 3 cut(s) | 157, 329, 767 |
| SduI | GDGCHC | 2 cut(s) | 117, 198 |
| SfaNI | GCATC | 3 cut(s) | 117, 157, 470 |
| SfcI | CTRYAG | 1 cut(s) | 374 |
| Sfr303I | CCGCGG | 1 cut(s) | 287 |
| SgrBI | CCGCGG | 1 cut(s) | 287 |
| SinI | GGWCC | 1 cut(s) | 350 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 344 |
| Sse9I | AATT | 2 cut(s) | 718, 857 |
| SspMI | CTAG | 1 cut(s) | 483 |
| SstI | GAGCTC | 1 cut(s) | 117 |
| StyD4I | CCNGG | 3 cut(s) | 155, 327, 765 |
| StyI | CCWWGG | 2 cut(s) | 231, 867 |
| TaaI | ACNGT | 5 cut(s) | 73, 280, 579, 607, 677 |
| TaiI | ACGT | 1 cut(s) | 12 |
| TaqI | TCGA | 2 cut(s) | 75, 587 |
| TasI | AATT | 2 cut(s) | 718, 857 |
| TauI | GCSGC | 5 cut(s) | 47, 286, 337, 537, 698 |
| TfiI | GAWTC | 1 cut(s) | 528 |
| TseI | GCWGC | 4 cut(s) | 182, 376, 413, 520 |
| TspDTI | ATGAA | 1 cut(s) | 610 |
| TspGWI | ACGGA | 3 cut(s) | 206, 552, 650 |
| Tth111I | GACNNNGTC | 1 cut(s) | 8 |
| VpaK11BI | GGWCC | 1 cut(s) | 350 |
| XmiI | GTMKAC | 1 cut(s) | 75 |
| XspI | CTAG | 1 cut(s) | 483 |