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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 4 cut(s) | 325, 350, 406, 487 |
| AccII | CGCG | 1 cut(s) | 448 |
| AclWI | GGATC | 1 cut(s) | 128 |
| AcoI | YGGCCR | 2 cut(s) | 516, 534 |
| AcyI | GRCGYC | 2 cut(s) | 326, 407 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 68, 71, 287, 383, 435 |
| AgeI | ACCGGT | 1 cut(s) | 168 |
| AjnI | CCWGG | 1 cut(s) | 111 |
| AleI | CACNNNNGTG | 1 cut(s) | 485 |
| AluBI | AGCT | 2 cut(s) | 178, 206 |
| AluI | AGCT | 2 cut(s) | 178, 206 |
| Alw21I | GWGCWC | 1 cut(s) | 208 |
| Alw26I | GTCTC | 2 cut(s) | 311, 524 |
| AlwI | GGATC | 1 cut(s) | 128 |
| Ama87I | CYCGRG | 3 cut(s) | 281, 492, 541 |
| AoxI | GGCC | 3 cut(s) | 437, 516, 534 |
| ApeKI | GCWGC | 2 cut(s) | 76, 125 |
| AsiGI | ACCGGT | 1 cut(s) | 168 |
| AspLEI | GCGC | 2 cut(s) | 328, 409 |
| AspS9I | GGNCC | 4 cut(s) | 285, 311, 437, 555 |
| AsuC2I | CCSGG | 3 cut(s) | 282, 283, 436 |
| AsuHPI | GGTGA | 2 cut(s) | 366, 436 |
| AsuII | TTCGAA | 1 cut(s) | 265 |
| AsuNHI | GCTAGC | 2 cut(s) | 52, 212 |
| AvaI | CYCGRG | 3 cut(s) | 281, 492, 541 |
| AvaII | GGWCC | 3 cut(s) | 285, 311, 555 |
| BaeGI | GKGCMC | 1 cut(s) | 585 |
| BanI | GGYRCC | 4 cut(s) | 325, 350, 406, 487 |
| BanII | GRGCYC | 1 cut(s) | 208 |
| BauI | CACGAG | 1 cut(s) | 201 |
| Bbv12I | GWGCWC | 1 cut(s) | 208 |
| BbvI | GCAGC | 2 cut(s) | 63, 137 |
| BccI | CCATC | 3 cut(s) | 444, 477, 569 |
| BceAI | ACGGC | 2 cut(s) | 201, 549 |
| BciT130I | CCWGG | 1 cut(s) | 113 |
| BcnI | CCSGG | 3 cut(s) | 282, 283, 436 |
| BcoDI | GTCTC | 2 cut(s) | 311, 524 |
| BfaI | CTAG | 3 cut(s) | 53, 117, 213 |
| BfoI | RGCGCY | 2 cut(s) | 329, 410 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 339 |
| BglII | AGATCT | 1 cut(s) | 152 |
| Bme1390I | CCNGG | 4 cut(s) | 113, 282, 283, 436 |
| Bme18I | GGWCC | 3 cut(s) | 285, 311, 555 |
| BmeT110I | CYCGRG | 3 cut(s) | 281, 492, 541 |
| BmgT120I | GGNCC | 4 cut(s) | 285, 311, 437, 555 |
| BmiI | GGNNCC | 9 cut(s) | 60, 286, 327, 343, 352, 408, 444, 489, 556 |
| BmrFI | CCNGG | 4 cut(s) | 113, 282, 283, 436 |
| BmtI | GCTAGC | 2 cut(s) | 56, 216 |
| Bpu14I | TTCGAA | 1 cut(s) | 265 |
| BpuMI | CCSGG | 3 cut(s) | 282, 283, 436 |
| BsaHI | GRCGYC | 2 cut(s) | 326, 407 |
| BsaJI | CCNNGG | 6 cut(s) | 237, 281, 337, 346, 377, 491 |
| BsaWI | WCCGGW | 2 cut(s) | 168, 313 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 16, 46 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 68, 71, 287, 383, 435 |
| Bse118I | RCCGGY | 4 cut(s) | 131, 168, 322, 421 |
| BseBI | CCWGG | 1 cut(s) | 113 |
| BseDI | CCNNGG | 6 cut(s) | 237, 281, 337, 346, 377, 491 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 68, 71, 287, 383, 435 |
| BseRI | GAGGAG | 3 cut(s) | 40, 539, 542 |
| BseSI | GKGCMC | 1 cut(s) | 585 |
| BseX3I | CGGCCG | 2 cut(s) | 516, 534 |
| BseXI | GCAGC | 2 cut(s) | 63, 137 |
| Bsh1236I | CGCG | 1 cut(s) | 448 |
| Bsh1285I | CGRYCG | 4 cut(s) | 307, 515, 519, 537 |
| BshFI | GGCC | 3 cut(s) | 439, 518, 536 |
| BshNI | GGYRCC | 4 cut(s) | 325, 350, 406, 487 |
| BshTI | ACCGGT | 1 cut(s) | 168 |
| BsiEI | CGRYCG | 4 cut(s) | 307, 515, 519, 537 |
| BsiHKAI | GWGCWC | 1 cut(s) | 208 |
| BsiHKCI | CYCGRG | 3 cut(s) | 281, 492, 541 |
| BsiSI | CCGG | 9 cut(s) | 132, 169, 282, 288, 314, 323, 422, 435, 440 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 68, 71, 287, 383, 435 |
| BsmAI | GTCTC | 2 cut(s) | 311, 524 |
| BsmBI | CGTCTC | 1 cut(s) | 524 |
| BsnI | GGCC | 3 cut(s) | 439, 518, 536 |
| BsoBI | CYCGRG | 3 cut(s) | 281, 492, 541 |
| Bsp119I | TTCGAA | 1 cut(s) | 265 |
| Bsp1286I | GDGCHC | 2 cut(s) | 208, 585 |
| Bsp143I | GATC | 4 cut(s) | 120, 152, 252, 512 |
| Bsp19I | CCATGG | 1 cut(s) | 237 |
| BspANI | GGCC | 3 cut(s) | 439, 518, 536 |
| BspFNI | CGCG | 1 cut(s) | 448 |
| BspLI | GGNNCC | 9 cut(s) | 60, 286, 327, 343, 352, 408, 444, 489, 556 |
| BspOI | GCTAGC | 2 cut(s) | 56, 216 |
| BspPI | GGATC | 1 cut(s) | 128 |
| BspQI | GCTCTTC | 1 cut(s) | 262 |
| BspT104I | TTCGAA | 1 cut(s) | 265 |
| BspT107I | GGYRCC | 4 cut(s) | 325, 350, 406, 487 |
| BsrFI | RCCGGY | 4 cut(s) | 131, 168, 322, 421 |
| BssAI | RCCGGY | 4 cut(s) | 131, 168, 322, 421 |
| BssECI | CCNNGG | 6 cut(s) | 237, 281, 337, 346, 377, 491 |
| BssMI | GATC | 4 cut(s) | 120, 152, 252, 512 |
| BssNI | GRCGYC | 2 cut(s) | 326, 407 |
| BssSI | CACGAG | 1 cut(s) | 201 |
| BssT1I | CCWWGG | 2 cut(s) | 237, 377 |
| Bst2BI | CACGAG | 1 cut(s) | 201 |
| Bst2UI | CCWGG | 1 cut(s) | 113 |
| Bst4CI | ACNGT | 2 cut(s) | 305, 484 |
| Bst6I | CTCTTC | 3 cut(s) | 96, 262, 493 |
| BstACI | GRCGYC | 2 cut(s) | 326, 407 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 580 |
| BstBI | TTCGAA | 1 cut(s) | 265 |
| BstC8I | GCNNGC | 8 cut(s) | 39, 54, 74, 133, 214, 459, 463, 581 |
| BstDSI | CCRYGG | 2 cut(s) | 237, 346 |
| BstEII | GGTNACC | 1 cut(s) | 424 |
| BstFNI | CGCG | 1 cut(s) | 448 |
| BstH2I | RGCGCY | 2 cut(s) | 329, 410 |
| BstHHI | GCGC | 2 cut(s) | 328, 409 |
| BstKTI | GATC | 4 cut(s) | 123, 155, 255, 515 |
| BstMAI | GTCTC | 2 cut(s) | 311, 524 |
| BstMBI | GATC | 4 cut(s) | 120, 152, 252, 512 |
| BstMCI | CGRYCG | 4 cut(s) | 307, 515, 519, 537 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 122, 339, 359, 388, 445, 454, 580 |
| BstNI | CCWGG | 1 cut(s) | 113 |
| BstNSI | RCATGY | 1 cut(s) | 276 |
| BstPI | GGTNACC | 1 cut(s) | 424 |
| BstSCI | CCNGG | 4 cut(s) | 111, 280, 281, 434 |
| BstSLI | GKGCMC | 1 cut(s) | 585 |
| BstUI | CGCG | 1 cut(s) | 448 |
| BstV1I | GCAGC | 2 cut(s) | 63, 137 |
| BstX2I | RGATCY | 1 cut(s) | 152 |
| BstYI | RGATCY | 1 cut(s) | 152 |
| BstZI | CGGCCG | 2 cut(s) | 516, 534 |
| BsuRI | GGCC | 3 cut(s) | 439, 518, 536 |
| BtgI | CCRYGG | 2 cut(s) | 237, 346 |
| BtgZI | GCGATG | 1 cut(s) | 463 |
| Cac8I | GCNNGC | 8 cut(s) | 39, 54, 74, 133, 214, 459, 463, 581 |
| CfoI | GCGC | 2 cut(s) | 328, 409 |
| Cfr10I | RCCGGY | 4 cut(s) | 131, 168, 322, 421 |
| Cfr13I | GGNCC | 4 cut(s) | 285, 311, 437, 555 |
| Cfr9I | CCCGGG | 1 cut(s) | 281 |
| CspAI | ACCGGT | 1 cut(s) | 168 |
| CviAII | CATG | 3 cut(s) | 238, 273, 600 |
| DinI | GGCGCC | 2 cut(s) | 327, 408 |
| DpnI | GATC | 4 cut(s) | 122, 154, 254, 514 |
| DpnII | GATC | 4 cut(s) | 120, 152, 252, 512 |
| EaeI | YGGCCR | 2 cut(s) | 516, 534 |
| EagI | CGGCCG | 2 cut(s) | 516, 534 |
| Eam1104I | CTCTTC | 3 cut(s) | 96, 262, 493 |
| EarI | CTCTTC | 3 cut(s) | 96, 262, 493 |
| EciI | GGCGGA | 2 cut(s) | 147, 547 |
| Ecl136II | GAGCTC | 1 cut(s) | 206 |
| EclXI | CGGCCG | 2 cut(s) | 516, 534 |
| Eco130I | CCWWGG | 2 cut(s) | 237, 377 |
| Eco24I | GRGCYC | 1 cut(s) | 208 |
| Eco47I | GGWCC | 3 cut(s) | 285, 311, 555 |
| Eco52I | CGGCCG | 2 cut(s) | 516, 534 |
| Eco53kI | GAGCTC | 1 cut(s) | 206 |
| Eco88I | CYCGRG | 3 cut(s) | 281, 492, 541 |
| Eco91I | GGTNACC | 1 cut(s) | 424 |
| EcoICRI | GAGCTC | 1 cut(s) | 206 |
| EcoO65I | GGTNACC | 1 cut(s) | 424 |
| EcoRII | CCWGG | 1 cut(s) | 111 |
| EcoT14I | CCWWGG | 2 cut(s) | 237, 377 |
| EcoT38I | GRGCYC | 1 cut(s) | 208 |
| EgeI | GGCGCC | 2 cut(s) | 327, 408 |
| EheI | GGCGCC | 2 cut(s) | 327, 408 |
| ErhI | CCWWGG | 2 cut(s) | 237, 377 |
| Esp3I | CGTCTC | 1 cut(s) | 524 |
| FaeI | CATG | 3 cut(s) | 241, 276, 603 |
| FaiI | YATR | 8 cut(s) | 84, 239, 274, 278, 301, 360, 477, 601 |
| FatI | CATG | 3 cut(s) | 237, 272, 599 |
| FauI | CCCGC | 3 cut(s) | 14, 65, 470 |
| FriOI | GRGCYC | 1 cut(s) | 208 |
| FspBI | CTAG | 3 cut(s) | 53, 117, 213 |
| GlaI | GCGC | 2 cut(s) | 327, 408 |
| HaeII | RGCGCY | 2 cut(s) | 329, 410 |
| HaeIII | GGCC | 3 cut(s) | 439, 518, 536 |
| HapII | CCGG | 9 cut(s) | 132, 169, 282, 288, 314, 323, 422, 435, 440 |
| HhaI | GCGC | 2 cut(s) | 328, 409 |
| Hin1I | GRCGYC | 2 cut(s) | 326, 407 |
| Hin1II | CATG | 3 cut(s) | 241, 276, 603 |
| Hin6I | GCGC | 2 cut(s) | 326, 407 |
| HinP1I | GCGC | 2 cut(s) | 326, 407 |
| HincII | GTYRAC | 2 cut(s) | 187, 198 |
| HindII | GTYRAC | 2 cut(s) | 187, 198 |
| HindIII | AAGCTT | 1 cut(s) | 176 |
| HinfI | GANTC | 1 cut(s) | 539 |
| HpaII | CCGG | 9 cut(s) | 132, 169, 282, 288, 314, 323, 422, 435, 440 |
| HphI | GGTGA | 2 cut(s) | 366, 436 |
| Hpy166II | GTNNAC | 4 cut(s) | 12, 187, 198, 311 |
| Hpy188I | TCNGA | 1 cut(s) | 566 |
| Hpy8I | GTNNAC | 4 cut(s) | 12, 187, 198, 311 |
| Hpy99I | CGWCG | 2 cut(s) | 509, 524 |
| HpyAV | CCTTC | 3 cut(s) | 61, 420, 564 |
| HpyCH4III | ACNGT | 2 cut(s) | 305, 484 |
| HpyCH4V | TGCA | 1 cut(s) | 230 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 122, 339, 359, 388, 445, 454, 580 |
| Hsp92I | GRCGYC | 2 cut(s) | 326, 407 |
| Hsp92II | CATG | 3 cut(s) | 241, 276, 603 |
| HspAI | GCGC | 2 cut(s) | 326, 407 |
| KasI | GGCGCC | 2 cut(s) | 325, 406 |
| KroI | GCCGGC | 1 cut(s) | 131 |
| KroNI | GCCGGC | 1 cut(s) | 133 |
| Kzo9I | GATC | 4 cut(s) | 120, 152, 252, 512 |
| LguI | GCTCTTC | 1 cut(s) | 262 |
| LmnI | GCTCC | 4 cut(s) | 64, 347, 442, 454 |
| Lsp1109I | GCAGC | 2 cut(s) | 63, 137 |
| MaeI | CTAG | 3 cut(s) | 53, 117, 213 |
| MaeIII | GTNAC | 1 cut(s) | 424 |
| MalI | GATC | 4 cut(s) | 122, 154, 254, 514 |
| MboI | GATC | 4 cut(s) | 120, 152, 252, 512 |
| MboII | GAAGA | 5 cut(s) | 110, 113, 279, 510, 579 |
| MflI | RGATCY | 1 cut(s) | 152 |
| MhlI | GDGCHC | 2 cut(s) | 208, 585 |
| Mly113I | GGCGCC | 2 cut(s) | 326, 407 |
| MlyI | GAGTC | 1 cut(s) | 533 |
| MmeI | TCCRAC | 1 cut(s) | 438 |
| MreI | CGCCGGCG | 1 cut(s) | 131 |
| MroNI | GCCGGC | 1 cut(s) | 131 |
| MslI | CAYNNNNRTG | 1 cut(s) | 485 |
| MspI | CCGG | 9 cut(s) | 132, 169, 282, 288, 314, 323, 422, 435, 440 |
| MspR9I | CCNGG | 4 cut(s) | 113, 282, 283, 436 |
| MvaI | CCWGG | 1 cut(s) | 113 |
| MvnI | CGCG | 1 cut(s) | 448 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 122, 339, 359, 388, 445, 454, 580 |
| NaeI | GCCGGC | 1 cut(s) | 133 |
| NarI | GGCGCC | 2 cut(s) | 326, 407 |
| NciI | CCSGG | 3 cut(s) | 282, 283, 436 |
| NcoI | CCATGG | 1 cut(s) | 237 |
| NdeII | GATC | 4 cut(s) | 120, 152, 252, 512 |
| NgoMIV | GCCGGC | 1 cut(s) | 131 |
| NheI | GCTAGC | 2 cut(s) | 52, 212 |
| NlaIII | CATG | 3 cut(s) | 241, 276, 603 |
| NlaIV | GGNNCC | 9 cut(s) | 60, 286, 327, 343, 352, 408, 444, 489, 556 |
| NmeAIII | GCCGAG | 3 cut(s) | 275, 354, 362 |
| NmuCI | GTSAC | 1 cut(s) | 424 |
| NspI | RCATGY | 1 cut(s) | 276 |
| NspV | TTCGAA | 1 cut(s) | 265 |
| OliI | CACNNNNGTG | 1 cut(s) | 485 |
| PaeR7I | CTCGAG | 1 cut(s) | 541 |
| PciSI | GCTCTTC | 1 cut(s) | 262 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 539 |
| PdiI | GCCGGC | 1 cut(s) | 133 |
| PinAI | ACCGGT | 1 cut(s) | 168 |
| Ple19I | CGATCG | 1 cut(s) | 515 |
| PleI | GAGTC | 1 cut(s) | 533 |
| PluTI | GGCGCC | 2 cut(s) | 329, 410 |
| PpsI | GAGTC | 1 cut(s) | 533 |
| Psp124BI | GAGCTC | 1 cut(s) | 208 |
| Psp6I | CCWGG | 1 cut(s) | 111 |
| PspEI | GGTNACC | 1 cut(s) | 424 |
| PspGI | CCWGG | 1 cut(s) | 111 |
| PspN4I | GGNNCC | 9 cut(s) | 60, 286, 327, 343, 352, 408, 444, 489, 556 |
| PspPI | GGNCC | 4 cut(s) | 285, 311, 437, 555 |
| PspXI | VCTCGAGB | 1 cut(s) | 541 |
| PsuI | RGATCY | 1 cut(s) | 152 |
| PvuI | CGATCG | 1 cut(s) | 515 |
| RseI | CAYNNNNRTG | 1 cut(s) | 485 |
| SacI | GAGCTC | 1 cut(s) | 208 |
| SapI | GCTCTTC | 1 cut(s) | 262 |
| Sau3AI | GATC | 4 cut(s) | 120, 152, 252, 512 |
| Sau96I | GGNCC | 4 cut(s) | 285, 311, 437, 555 |
| SchI | GAGTC | 1 cut(s) | 533 |
| ScrFI | CCNGG | 4 cut(s) | 113, 282, 283, 436 |
| SduI | GDGCHC | 2 cut(s) | 208, 585 |
| SetI | ASST | 4 cut(s) | 34, 180, 208, 379 |
| SfoI | GGCGCC | 2 cut(s) | 327, 408 |
| Sfr274I | CTCGAG | 1 cut(s) | 541 |
| SfuI | TTCGAA | 1 cut(s) | 265 |
| SgrAI | CRCCGGYG | 2 cut(s) | 131, 322 |
| SinI | GGWCC | 3 cut(s) | 285, 311, 555 |
| SlaI | CTCGAG | 1 cut(s) | 541 |
| SmaI | CCCGGG | 1 cut(s) | 283 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 485 |
| SmlI | CTYRAG | 1 cut(s) | 541 |
| SmoI | CTYRAG | 1 cut(s) | 541 |
| SspDI | GGCGCC | 2 cut(s) | 325, 406 |
| SspMI | CTAG | 3 cut(s) | 53, 117, 213 |
| SstI | GAGCTC | 1 cut(s) | 208 |
| StyD4I | CCNGG | 4 cut(s) | 111, 280, 281, 434 |
| StyI | CCWWGG | 2 cut(s) | 237, 377 |
| TaaI | ACNGT | 2 cut(s) | 305, 484 |
| TaqI | TCGA | 3 cut(s) | 265, 542, 589 |
| TauI | GCSGC | 8 cut(s) | 52, 59, 131, 294, 336, 356, 448, 468 |
| TseFI | GTSAC | 1 cut(s) | 424 |
| TseI | GCWGC | 2 cut(s) | 76, 125 |
| Tsp45I | GTSAC | 1 cut(s) | 424 |
| TspMI | CCCGGG | 1 cut(s) | 281 |
| VpaK11BI | GGWCC | 3 cut(s) | 285, 311, 555 |
| XceI | RCATGY | 1 cut(s) | 276 |
| XhoI | CTCGAG | 1 cut(s) | 541 |
| XmaI | CCCGGG | 1 cut(s) | 281 |
| XspI | CTAG | 3 cut(s) | 53, 117, 213 |