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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 12 |
| Acc65I | GGTACC | 1 cut(s) | 1300 |
| AccB1I | GGYRCC | 6 cut(s) | 335, 523, 1300, 1315, 1899, 2153 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 159, 1162, 2199 |
| AccBSI | CCGCTC | 7 cut(s) | 62, 884, 1618, 1756, 1897, 1909, 2313 |
| AccIII | TCCGGA | 1 cut(s) | 38 |
| AclI | AACGTT | 1 cut(s) | 1884 |
| AclWI | GGATC | 3 cut(s) | 49, 532, 1965 |
| AcoI | YGGCCR | 3 cut(s) | 3, 1965, 2082 |
| AcsI | RAATTY | 1 cut(s) | 73 |
| AcuI | CTGAAG | 5 cut(s) | 66, 410, 1388, 1663, 2528 |
| AcyI | GRCGYC | 5 cut(s) | 9, 558, 1733, 1866, 2363 |
| AfaI | GTAC | 9 cut(s) | 683, 776, 818, 896, 1302, 1393, 1537, 2120, 2260 |
| AflIII | ACRYGT | 2 cut(s) | 585, 1016 |
| AgsI | TTSAA | 4 cut(s) | 347, 456, 2303, 2549 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 769 |
| AjiI | CACGTC | 2 cut(s) | 1519, 1699 |
| AjnI | CCWGG | 6 cut(s) | 540, 693, 983, 1806, 1902, 2290 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1581, 1613 |
| Alw21I | GWGCWC | 3 cut(s) | 109, 486, 1764 |
| Alw26I | GTCTC | 4 cut(s) | 299, 980, 2388, 2426 |
| Alw44I | GTGCAC | 2 cut(s) | 105, 482 |
| AlwI | GGATC | 3 cut(s) | 49, 532, 1965 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 541, 1162 |
| Ama87I | CYCGRG | 5 cut(s) | 1429, 2314, 2412, 2436, 2450 |
| Aor13HI | TCCGGA | 1 cut(s) | 38 |
| ApaLI | GTGCAC | 2 cut(s) | 105, 482 |
| ApoI | RAATTY | 1 cut(s) | 73 |
| Asp718I | GGTACC | 1 cut(s) | 1300 |
| AsuC2I | CCSGG | 4 cut(s) | 411, 1038, 1123, 1462 |
| AsuHPI | GGTGA | 6 cut(s) | 1238, 1267, 1327, 1598, 1598, 2054 |
| AvaI | CYCGRG | 5 cut(s) | 1429, 2314, 2412, 2436, 2450 |
| AvaII | GGWCC | 6 cut(s) | 641, 828, 1078, 1150, 1398, 1464 |
| AxyI | CCTNAGG | 1 cut(s) | 758 |
| BaeGI | GKGCMC | 7 cut(s) | 109, 486, 528, 581, 1320, 1698, 2158 |
| BanI | GGYRCC | 6 cut(s) | 335, 523, 1300, 1315, 1899, 2153 |
| BanII | GRGCYC | 3 cut(s) | 1175, 1764, 2311 |
| BauI | CACGAG | 1 cut(s) | 485 |
| Bbv12I | GWGCWC | 3 cut(s) | 109, 486, 1764 |
| BbvCI | CCTCAGC | 1 cut(s) | 2064 |
| BccI | CCATC | 5 cut(s) | 884, 1425, 2201, 2239, 2414 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 244, 278, 1904, 1938 |
| BciT130I | CCWGG | 6 cut(s) | 542, 695, 985, 1808, 1904, 2292 |
| BcnI | CCSGG | 4 cut(s) | 411, 1038, 1123, 1462 |
| BcoDI | GTCTC | 4 cut(s) | 299, 980, 2388, 2426 |
| BfaI | CTAG | 6 cut(s) | 131, 201, 248, 2036, 2159, 2342 |
| BfmI | CTRYAG | 5 cut(s) | 146, 438, 533, 1784, 2177 |
| BfoI | RGCGCY | 7 cut(s) | 247, 608, 694, 740, 1169, 1265, 1283 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2018 |
| BlpI | GCTNAGC | 1 cut(s) | 1169 |
| Bme18I | GGWCC | 6 cut(s) | 641, 828, 1078, 1150, 1398, 1464 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 769 |
| BmeT110I | CYCGRG | 5 cut(s) | 1429, 2314, 2412, 2436, 2450 |
| BmgBI | CACGTC | 2 cut(s) | 1519, 1699 |
| BmrI | ACTGGG | 2 cut(s) | 2209, 2365 |
| BmsI | GCATC | 6 cut(s) | 191, 942, 1846, 2163, 2205, 2493 |
| BmuI | ACTGGG | 2 cut(s) | 2209, 2365 |
| BoxI | GACNNNNGTC | 3 cut(s) | 972, 1661, 2438 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 2336, 2368, 2510, 2542 |
| BpmI | CTGGAG | 4 cut(s) | 300, 1407, 1925, 1952 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1763, 1971, 2064 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1169 |
| BpuMI | CCSGG | 4 cut(s) | 411, 1038, 1123, 1462 |
| BsaAI | YACGTR | 1 cut(s) | 685 |
| BsaHI | GRCGYC | 5 cut(s) | 9, 558, 1733, 1866, 2363 |
| BsaI | GGTCTC | 2 cut(s) | 299, 2426 |
| BsaWI | WCCGGW | 1 cut(s) | 38 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 296, 326, 833, 863, 1097, 1127, 1586, 1616 |
| Bse118I | RCCGGY | 3 cut(s) | 384, 2150, 2218 |
| Bse1I | ACTGG | 6 cut(s) | 464, 681, 782, 2204, 2371, 2495 |
| Bse21I | CCTNAGG | 1 cut(s) | 758 |
| Bse3DI | GCAATG | 2 cut(s) | 795, 1080 |
| BseAI | TCCGGA | 1 cut(s) | 38 |
| BseBI | CCWGG | 6 cut(s) | 542, 695, 985, 1808, 1904, 2292 |
| BseGI | GGATG | 5 cut(s) | 369, 876, 2231, 2425, 2478 |
| BseMI | GCAATG | 2 cut(s) | 795, 1080 |
| BseMII | CTCAG | 7 cut(s) | 733, 749, 1160, 1777, 2013, 2055, 2369 |
| BseNI | ACTGG | 6 cut(s) | 464, 681, 782, 2204, 2371, 2495 |
| BseRI | GAGGAG | 3 cut(s) | 317, 458, 2531 |
| BseSI | GKGCMC | 7 cut(s) | 109, 486, 528, 581, 1320, 1698, 2158 |
| BseX3I | CGGCCG | 1 cut(s) | 2082 |
| BseYI | CCCAGC | 4 cut(s) | 806, 1343, 1621, 2390 |
| BsgI | GTGCAG | 1 cut(s) | 2246 |
| Bsh1285I | CGRYCG | 3 cut(s) | 648, 2085, 2223 |
| BshNI | GGYRCC | 6 cut(s) | 335, 523, 1300, 1315, 1899, 2153 |
| BsiEI | CGRYCG | 3 cut(s) | 648, 2085, 2223 |
| BsiHKAI | GWGCWC | 3 cut(s) | 109, 486, 1764 |
| BsiHKCI | CYCGRG | 5 cut(s) | 1429, 2314, 2412, 2436, 2450 |
| BsiSI | CCGG | 8 cut(s) | 39, 385, 411, 1037, 1122, 1461, 2151, 2219 |
| BslFI | GGGAC | 7 cut(s) | 176, 776, 1477, 1805, 1930, 2261, 2426 |
| BsmAI | GTCTC | 4 cut(s) | 299, 980, 2388, 2426 |
| BsmBI | CGTCTC | 1 cut(s) | 980 |
| BsmFI | GGGAC | 7 cut(s) | 176, 776, 1477, 1805, 1930, 2261, 2426 |
| Bso31I | GGTCTC | 2 cut(s) | 299, 2426 |
| BsoBI | CYCGRG | 5 cut(s) | 1429, 2314, 2412, 2436, 2450 |
| Bsp13I | TCCGGA | 1 cut(s) | 38 |
| Bsp143I | GATC | 6 cut(s) | 41, 537, 747, 1957, 1989, 2025 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1169 |
| Bsp19I | CCATGG | 2 cut(s) | 158, 1746 |
| BspCNI | CTCAG | 7 cut(s) | 732, 750, 1161, 1776, 2014, 2056, 2368 |
| BspEI | TCCGGA | 1 cut(s) | 38 |
| BspMAI | CTGCAG | 1 cut(s) | 2181 |
| BspPI | GGATC | 3 cut(s) | 49, 532, 1965 |
| BspQI | GCTCTTC | 1 cut(s) | 234 |
| BspT107I | GGYRCC | 6 cut(s) | 335, 523, 1300, 1315, 1899, 2153 |
| BspTNI | GGTCTC | 2 cut(s) | 299, 2426 |
| BsrBI | CCGCTC | 7 cut(s) | 62, 884, 1618, 1756, 1897, 1909, 2313 |
| BsrDI | GCAATG | 2 cut(s) | 795, 1080 |
| BsrFI | RCCGGY | 3 cut(s) | 384, 2150, 2218 |
| BsrI | ACTGG | 6 cut(s) | 464, 681, 782, 2204, 2371, 2495 |
| BssAI | RCCGGY | 3 cut(s) | 384, 2150, 2218 |
| BssMI | GATC | 6 cut(s) | 41, 537, 747, 1957, 1989, 2025 |
| BssNI | GRCGYC | 5 cut(s) | 9, 558, 1733, 1866, 2363 |
| BssSI | CACGAG | 1 cut(s) | 485 |
| BssT1I | CCWWGG | 4 cut(s) | 158, 730, 1746, 2235 |
| Bst2BI | CACGAG | 1 cut(s) | 485 |
| Bst2UI | CCWGG | 6 cut(s) | 542, 695, 985, 1808, 1904, 2292 |
| Bst4CI | ACNGT | 5 cut(s) | 104, 439, 649, 1586, 1920 |
| Bst6I | CTCTTC | 3 cut(s) | 234, 342, 909 |
| BstACI | GRCGYC | 5 cut(s) | 9, 558, 1733, 1866, 2363 |
| BstBAI | YACGTR | 1 cut(s) | 685 |
| BstDEI | CTNAG | 9 cut(s) | 719, 758, 864, 1169, 1763, 1971, 2022, 2064, 2355 |
| BstDSI | CCRYGG | 6 cut(s) | 158, 477, 648, 801, 1746, 1870 |
| BstEII | GGTNACC | 1 cut(s) | 1456 |
| BstF5I | GGATG | 5 cut(s) | 369, 876, 2231, 2425, 2478 |
| BstH2I | RGCGCY | 7 cut(s) | 247, 608, 694, 740, 1169, 1265, 1283 |
| BstKTI | GATC | 6 cut(s) | 44, 540, 750, 1960, 1992, 2028 |
| BstMAI | GTCTC | 4 cut(s) | 299, 980, 2388, 2426 |
| BstMBI | GATC | 6 cut(s) | 41, 537, 747, 1957, 1989, 2025 |
| BstMCI | CGRYCG | 3 cut(s) | 648, 2085, 2223 |
| BstNI | CCWGG | 6 cut(s) | 542, 695, 985, 1808, 1904, 2292 |
| BstNSI | RCATGY | 1 cut(s) | 589 |
| BstPAI | GACNNNNGTC | 3 cut(s) | 972, 1661, 2438 |
| BstPI | GGTNACC | 1 cut(s) | 1456 |
| BstSFI | CTRYAG | 5 cut(s) | 146, 438, 533, 1784, 2177 |
| BstSLI | GKGCMC | 7 cut(s) | 109, 486, 528, 581, 1320, 1698, 2158 |
| BstX2I | RGATCY | 2 cut(s) | 41, 537 |
| BstYI | RGATCY | 2 cut(s) | 41, 537 |
| BstZI | CGGCCG | 1 cut(s) | 2082 |
| Bsu36I | CCTNAGG | 1 cut(s) | 758 |
| BtgI | CCRYGG | 6 cut(s) | 158, 477, 648, 801, 1746, 1870 |
| BtgZI | GCGATG | 2 cut(s) | 168, 1869 |
| BtrI | CACGTC | 2 cut(s) | 1519, 1699 |
| BtsCI | GGATG | 5 cut(s) | 369, 876, 2231, 2425, 2478 |
| BtsI | GCAGTG | 4 cut(s) | 34, 116, 2268, 2280 |
| BtsIMutI | CAGTG | 7 cut(s) | 34, 116, 471, 1672, 2129, 2268, 2280 |
| CaiI | CAGNNNCTG | 2 cut(s) | 541, 1162 |
| CciNI | GCGGCCGC | 1 cut(s) | 2082 |
| Cfr10I | RCCGGY | 3 cut(s) | 384, 2150, 2218 |
| Cfr42I | CCGCGG | 1 cut(s) | 480 |
| CsiI | ACCWGGT | 1 cut(s) | 983 |
| Csp6I | GTAC | 9 cut(s) | 682, 775, 817, 895, 1301, 1392, 1536, 2119, 2259 |
| CviAII | CATG | 7 cut(s) | 159, 586, 769, 1111, 1715, 1747, 2297 |
| CviQI | GTAC | 9 cut(s) | 682, 775, 817, 895, 1301, 1392, 1536, 2119, 2259 |
| DdeI | CTNAG | 9 cut(s) | 719, 758, 864, 1169, 1763, 1971, 2022, 2064, 2355 |
| DpnI | GATC | 6 cut(s) | 43, 539, 749, 1959, 1991, 2027 |
| DpnII | GATC | 6 cut(s) | 41, 537, 747, 1957, 1989, 2025 |
| DriI | GACNNNNNGTC | 1 cut(s) | 769 |
| EaeI | YGGCCR | 3 cut(s) | 3, 1965, 2082 |
| EagI | CGGCCG | 1 cut(s) | 2082 |
| Eam1104I | CTCTTC | 3 cut(s) | 234, 342, 909 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 769 |
| EarI | CTCTTC | 3 cut(s) | 234, 342, 909 |
| EciI | GGCGGA | 6 cut(s) | 668, 964, 1488, 1996, 2349, 2432 |
| Ecl136II | GAGCTC | 1 cut(s) | 1762 |
| EclXI | CGGCCG | 1 cut(s) | 2082 |
| Eco130I | CCWWGG | 4 cut(s) | 158, 730, 1746, 2235 |
| Eco147I | AGGCCT | 1 cut(s) | 1375 |
| Eco24I | GRGCYC | 3 cut(s) | 1175, 1764, 2311 |
| Eco31I | GGTCTC | 2 cut(s) | 299, 2426 |
| Eco47I | GGWCC | 6 cut(s) | 641, 828, 1078, 1150, 1398, 1464 |
| Eco52I | CGGCCG | 1 cut(s) | 2082 |
| Eco53kI | GAGCTC | 1 cut(s) | 1762 |
| Eco57I | CTGAAG | 5 cut(s) | 66, 410, 1388, 1663, 2528 |
| Eco81I | CCTNAGG | 1 cut(s) | 758 |
| Eco88I | CYCGRG | 5 cut(s) | 1429, 2314, 2412, 2436, 2450 |
| Eco91I | GGTNACC | 1 cut(s) | 1456 |
| EcoICRI | GAGCTC | 1 cut(s) | 1762 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1464 |
| EcoO65I | GGTNACC | 1 cut(s) | 1456 |
| EcoRII | CCWGG | 6 cut(s) | 540, 693, 983, 1806, 1902, 2290 |
| EcoT14I | CCWWGG | 4 cut(s) | 158, 730, 1746, 2235 |
| EcoT38I | GRGCYC | 3 cut(s) | 1175, 1764, 2311 |
| ErhI | CCWWGG | 4 cut(s) | 158, 730, 1746, 2235 |
| Esp3I | CGTCTC | 1 cut(s) | 980 |
| FaeI | CATG | 7 cut(s) | 162, 589, 772, 1114, 1718, 1750, 2300 |
| FaqI | GGGAC | 7 cut(s) | 176, 776, 1477, 1805, 1930, 2261, 2426 |
| FatI | CATG | 7 cut(s) | 158, 585, 768, 1110, 1714, 1746, 2296 |
| FokI | GGATG | 5 cut(s) | 376, 863, 2218, 2432, 2465 |
| FriOI | GRGCYC | 3 cut(s) | 1175, 1764, 2311 |
| FspBI | CTAG | 6 cut(s) | 131, 201, 248, 2036, 2159, 2342 |
| GsaI | CCCAGC | 4 cut(s) | 810, 1347, 1625, 2394 |
| GsuI | CTGGAG | 4 cut(s) | 300, 1407, 1925, 1952 |
| HaeII | RGCGCY | 7 cut(s) | 247, 608, 694, 740, 1169, 1265, 1283 |
| HapII | CCGG | 8 cut(s) | 39, 385, 411, 1037, 1122, 1461, 2151, 2219 |
| Hin1I | GRCGYC | 5 cut(s) | 9, 558, 1733, 1866, 2363 |
| Hin1II | CATG | 7 cut(s) | 162, 589, 772, 1114, 1718, 1750, 2300 |
| HincII | GTYRAC | 2 cut(s) | 382, 1656 |
| HindII | GTYRAC | 2 cut(s) | 382, 1656 |
| HindIII | AAGCTT | 1 cut(s) | 2208 |
| HpaII | CCGG | 8 cut(s) | 39, 385, 411, 1037, 1122, 1461, 2151, 2219 |
| HphI | GGTGA | 6 cut(s) | 1238, 1267, 1327, 1598, 1598, 2054 |
| Hpy166II | GTNNAC | 9 cut(s) | 107, 382, 484, 682, 715, 1150, 1589, 1656, 2476 |
| Hpy188I | TCNGA | 8 cut(s) | 46, 59, 100, 881, 1180, 1998, 2247, 2377 |
| Hpy188III | TCNNGA | 4 cut(s) | 39, 191, 751, 2342 |
| Hpy8I | GTNNAC | 9 cut(s) | 107, 382, 484, 682, 715, 1150, 1589, 1656, 2476 |
| HpyCH4III | ACNGT | 5 cut(s) | 104, 439, 649, 1586, 1920 |
| HpyCH4IV | ACGT | 7 cut(s) | 9, 165, 684, 848, 1518, 1698, 1884 |
| HpyCH4V | TGCA | 7 cut(s) | 107, 182, 235, 484, 795, 2179, 2227 |
| HpyF3I | CTNAG | 9 cut(s) | 719, 758, 864, 1169, 1763, 1971, 2022, 2064, 2355 |
| HpySE526I | ACGT | 7 cut(s) | 9, 165, 684, 848, 1518, 1698, 1884 |
| Hsp92I | GRCGYC | 5 cut(s) | 9, 558, 1733, 1866, 2363 |
| Hsp92II | CATG | 7 cut(s) | 162, 589, 772, 1114, 1718, 1750, 2300 |
| KflI | GGGWCCC | 1 cut(s) | 1464 |
| Kpn2I | TCCGGA | 1 cut(s) | 38 |
| KpnI | GGTACC | 1 cut(s) | 1304 |
| KspI | CCGCGG | 1 cut(s) | 480 |
| Kzo9I | GATC | 6 cut(s) | 41, 537, 747, 1957, 1989, 2025 |
| LguI | GCTCTTC | 1 cut(s) | 234 |
| LweI | GCATC | 6 cut(s) | 191, 942, 1846, 2163, 2205, 2493 |
| MabI | ACCWGGT | 1 cut(s) | 983 |
| MaeI | CTAG | 6 cut(s) | 131, 201, 248, 2036, 2159, 2342 |
| MaeII | ACGT | 7 cut(s) | 9, 165, 684, 848, 1518, 1698, 1884 |
| MaeIII | GTNAC | 7 cut(s) | 470, 508, 1055, 1226, 1255, 1333, 1456 |
| MalI | GATC | 6 cut(s) | 43, 539, 749, 1959, 1991, 2027 |
| MbiI | CCGCTC | 7 cut(s) | 62, 884, 1618, 1756, 1897, 1909, 2313 |
| MboI | GATC | 6 cut(s) | 41, 537, 747, 1957, 1989, 2025 |
| MboII | GAAGA | 7 cut(s) | 251, 359, 926, 1318, 1457, 1492, 1990 |
| MflI | RGATCY | 2 cut(s) | 41, 537 |
| MluCI | AATT | 2 cut(s) | 73, 855 |
| MluI | ACGCGT | 1 cut(s) | 1016 |
| MlyI | GAGTC | 8 cut(s) | 77, 320, 758, 1544, 2012, 2105, 2345, 2448 |
| MmeI | TCCRAC | 3 cut(s) | 855, 1329, 2270 |
| MroI | TCCGGA | 1 cut(s) | 38 |
| MseI | TTAA | 1 cut(s) | 858 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1221, 1250 |
| MspI | CCGG | 8 cut(s) | 39, 385, 411, 1037, 1122, 1461, 2151, 2219 |
| MvaI | CCWGG | 6 cut(s) | 542, 695, 985, 1808, 1904, 2292 |
| NciI | CCSGG | 4 cut(s) | 411, 1038, 1123, 1462 |
| NcoI | CCATGG | 2 cut(s) | 158, 1746 |
| NdeII | GATC | 6 cut(s) | 41, 537, 747, 1957, 1989, 2025 |
| NlaIII | CATG | 7 cut(s) | 162, 589, 772, 1114, 1718, 1750, 2300 |
| NmeAIII | GCCGAG | 1 cut(s) | 1594 |
| NmuCI | GTSAC | 6 cut(s) | 470, 508, 1055, 1226, 1255, 1333 |
| NotI | GCGGCCGC | 1 cut(s) | 2082 |
| NspI | RCATGY | 1 cut(s) | 589 |
| PceI | AGGCCT | 1 cut(s) | 1375 |
| PciI | ACATGT | 1 cut(s) | 585 |
| PciSI | GCTCTTC | 1 cut(s) | 234 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 92, 184, 1367 |
| PfeI | GAWTC | 4 cut(s) | 35, 952, 1030, 1670 |
| PflFI | GACNNNGTC | 1 cut(s) | 310 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 159, 1162, 2199 |
| PleI | GAGTC | 8 cut(s) | 77, 319, 758, 1544, 2011, 2104, 2345, 2447 |
| PpsI | GAGTC | 8 cut(s) | 77, 319, 758, 1544, 2011, 2104, 2345, 2447 |
| Ppu21I | YACGTR | 1 cut(s) | 685 |
| PpuMI | RGGWCCY | 1 cut(s) | 1464 |
| PscI | ACATGT | 1 cut(s) | 585 |
| PshAI | GACNNNNGTC | 3 cut(s) | 972, 1661, 2438 |
| Psp124BI | GAGCTC | 1 cut(s) | 1764 |
| Psp1406I | AACGTT | 1 cut(s) | 1884 |
| Psp5II | RGGWCCY | 1 cut(s) | 1464 |
| Psp6I | CCWGG | 6 cut(s) | 540, 693, 983, 1806, 1902, 2290 |
| PspEI | GGTNACC | 1 cut(s) | 1456 |
| PspFI | CCCAGC | 4 cut(s) | 806, 1343, 1621, 2390 |
| PspGI | CCWGG | 6 cut(s) | 540, 693, 983, 1806, 1902, 2290 |
| PspPPI | RGGWCCY | 1 cut(s) | 1464 |
| PstI | CTGCAG | 1 cut(s) | 2181 |
| PstNI | CAGNNNCTG | 2 cut(s) | 541, 1162 |
| PsuI | RGATCY | 2 cut(s) | 41, 537 |
| PsyI | GACNNNGTC | 1 cut(s) | 310 |
| PvuII | CAGCTG | 1 cut(s) | 1385 |
| RsaI | GTAC | 9 cut(s) | 683, 776, 818, 896, 1302, 1393, 1537, 2120, 2260 |
| RsaNI | GTAC | 9 cut(s) | 682, 775, 817, 895, 1301, 1392, 1536, 2119, 2259 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1221, 1250 |
| SacI | GAGCTC | 1 cut(s) | 1764 |
| SacII | CCGCGG | 1 cut(s) | 480 |
| SapI | GCTCTTC | 1 cut(s) | 234 |
| SaqAI | TTAA | 1 cut(s) | 858 |
| Sau3AI | GATC | 6 cut(s) | 41, 537, 747, 1957, 1989, 2025 |
| SchI | GAGTC | 8 cut(s) | 77, 320, 758, 1544, 2012, 2105, 2345, 2448 |
| SexAI | ACCWGGT | 1 cut(s) | 983 |
| SfaNI | GCATC | 6 cut(s) | 191, 942, 1846, 2163, 2205, 2493 |
| SfcI | CTRYAG | 5 cut(s) | 146, 438, 533, 1784, 2177 |
| Sfr303I | CCGCGG | 1 cut(s) | 480 |
| SgrBI | CCGCGG | 1 cut(s) | 480 |
| SinI | GGWCC | 6 cut(s) | 641, 828, 1078, 1150, 1398, 1464 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1221, 1250 |
| Sse9I | AATT | 2 cut(s) | 73, 855 |
| SseBI | AGGCCT | 1 cut(s) | 1375 |
| SspMI | CTAG | 6 cut(s) | 131, 201, 248, 2036, 2159, 2342 |
| SstI | GAGCTC | 1 cut(s) | 1764 |
| StuI | AGGCCT | 1 cut(s) | 1375 |
| StyI | CCWWGG | 4 cut(s) | 158, 730, 1746, 2235 |
| TaaI | ACNGT | 5 cut(s) | 104, 439, 649, 1586, 1920 |
| TaiI | ACGT | 7 cut(s) | 12, 168, 687, 851, 1521, 1701, 1887 |
| TaqI | TCGA | 7 cut(s) | 23, 138, 327, 750, 1827, 2196, 2213 |
| TaqII | GACCGA | 3 cut(s) | 323, 658, 2150 |
| TasI | AATT | 2 cut(s) | 73, 855 |
| TatI | WGTACW | 1 cut(s) | 2118 |
| TfiI | GAWTC | 4 cut(s) | 35, 952, 1030, 1670 |
| Tru1I | TTAA | 1 cut(s) | 858 |
| Tru9I | TTAA | 1 cut(s) | 858 |
| TscAI | CASTG | 7 cut(s) | 34, 123, 471, 1672, 2136, 2275, 2287 |
| TseFI | GTSAC | 6 cut(s) | 470, 508, 1055, 1226, 1255, 1333 |
| Tsp45I | GTSAC | 6 cut(s) | 470, 508, 1055, 1226, 1255, 1333 |
| TspDTI | ATGAA | 2 cut(s) | 1205, 1234 |
| TspGWI | ACGGA | 3 cut(s) | 84, 962, 1340 |
| TspRI | CASTG | 7 cut(s) | 34, 123, 471, 1672, 2136, 2275, 2287 |
| Tth111I | GACNNNGTC | 1 cut(s) | 310 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 159, 1162, 2199 |
| VneI | GTGCAC | 2 cut(s) | 105, 482 |
| VpaK11BI | GGWCC | 6 cut(s) | 641, 828, 1078, 1150, 1398, 1464 |
| XapI | RAATTY | 1 cut(s) | 73 |
| XbaI | TCTAGA | 1 cut(s) | 2341 |
| XceI | RCATGY | 1 cut(s) | 589 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1345, 1744 |
| XspI | CTAG | 6 cut(s) | 131, 201, 248, 2036, 2159, 2342 |
| ZraI | GACGTC | 1 cut(s) | 10 |