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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 2 cut(s) | 187, 328 |
| AccII | CGCG | 3 cut(s) | 28, 164, 303 |
| AciI | CCGC | 7 cut(s) | 44, 162, 187, 251, 301, 303, 328 |
| AcoI | YGGCCR | 1 cut(s) | 124 |
| AcuI | CTGAAG | 1 cut(s) | 215 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 178, 327 |
| AflIII | ACRYGT | 1 cut(s) | 351 |
| AgsI | TTSAA | 2 cut(s) | 98, 385 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 352 |
| AluBI | AGCT | 6 cut(s) | 114, 193, 247, 310, 361, 377 |
| AluI | AGCT | 6 cut(s) | 114, 193, 247, 310, 361, 377 |
| Alw26I | GTCTC | 2 cut(s) | 24, 360 |
| AoxI | GGCC | 4 cut(s) | 40, 58, 124, 234 |
| ApaI | GGGCCC | 1 cut(s) | 44 |
| ApeKI | GCWGC | 1 cut(s) | 190 |
| AspS9I | GGNCC | 4 cut(s) | 40, 41, 253, 331 |
| AsuNHI | GCTAGC | 1 cut(s) | 247 |
| AvaII | GGWCC | 2 cut(s) | 253, 331 |
| AxyI | CCTNAGG | 1 cut(s) | 177 |
| BaeGI | GKGCMC | 1 cut(s) | 44 |
| BalI | TGGCCA | 1 cut(s) | 126 |
| BanII | GRGCYC | 1 cut(s) | 44 |
| BauI | CACGAG | 1 cut(s) | 215 |
| BbvI | GCAGC | 1 cut(s) | 202 |
| BccI | CCATC | 2 cut(s) | 135, 286 |
| BceAI | ACGGC | 1 cut(s) | 305 |
| BcoDI | GTCTC | 2 cut(s) | 24, 360 |
| BfaI | CTAG | 1 cut(s) | 248 |
| BisI | GCNGC | 4 cut(s) | 162, 188, 191, 304 |
| BlsI | GCNGC | 4 cut(s) | 163, 189, 192, 305 |
| Bme18I | GGWCC | 2 cut(s) | 253, 331 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 352 |
| BmgT120I | GGNCC | 4 cut(s) | 40, 41, 253, 331 |
| BmiI | GGNNCC | 3 cut(s) | 41, 42, 332 |
| BmsI | GCATC | 1 cut(s) | 286 |
| BmtI | GCTAGC | 1 cut(s) | 251 |
| BpuEI | CTTGAG | 1 cut(s) | 278 |
| BsaI | GGTCTC | 1 cut(s) | 24 |
| BsaJI | CCNNGG | 2 cut(s) | 273, 301 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 178, 327 |
| Bse21I | CCTNAGG | 1 cut(s) | 177 |
| BseDI | CCNNGG | 2 cut(s) | 273, 301 |
| BseGI | GGATG | 3 cut(s) | 18, 27, 301 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 178, 327 |
| BseMII | CTCAG | 2 cut(s) | 191, 371 |
| BseRI | GAGGAG | 1 cut(s) | 215 |
| BseSI | GKGCMC | 1 cut(s) | 44 |
| BseXI | GCAGC | 1 cut(s) | 202 |
| BseYI | CCCAGC | 1 cut(s) | 84 |
| Bsh1236I | CGCG | 3 cut(s) | 28, 164, 303 |
| BshFI | GGCC | 4 cut(s) | 42, 60, 126, 236 |
| BslFI | GGGAC | 1 cut(s) | 344 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 178, 327 |
| BsmAI | GTCTC | 2 cut(s) | 24, 360 |
| BsmFI | GGGAC | 1 cut(s) | 344 |
| BsnI | GGCC | 4 cut(s) | 42, 60, 126, 236 |
| Bso31I | GGTCTC | 1 cut(s) | 24 |
| Bsp120I | GGGCCC | 1 cut(s) | 40 |
| Bsp1286I | GDGCHC | 1 cut(s) | 44 |
| Bsp143I | GATC | 1 cut(s) | 204 |
| BspACI | CCGC | 7 cut(s) | 44, 162, 187, 251, 301, 303, 328 |
| BspANI | GGCC | 4 cut(s) | 42, 60, 126, 236 |
| BspCNI | CTCAG | 2 cut(s) | 190, 370 |
| BspFNI | CGCG | 3 cut(s) | 28, 164, 303 |
| BspLI | GGNNCC | 3 cut(s) | 41, 42, 332 |
| BspOI | GCTAGC | 1 cut(s) | 251 |
| BspTNI | GGTCTC | 1 cut(s) | 24 |
| BsrBI | CCGCTC | 2 cut(s) | 187, 328 |
| BssECI | CCNNGG | 2 cut(s) | 273, 301 |
| BssMI | GATC | 1 cut(s) | 204 |
| BssSI | CACGAG | 1 cut(s) | 215 |
| BssT1I | CCWWGG | 1 cut(s) | 273 |
| Bst2BI | CACGAG | 1 cut(s) | 215 |
| Bst4CI | ACNGT | 2 cut(s) | 76, 102 |
| Bst6I | CTCTTC | 1 cut(s) | 2 |
| BstC8I | GCNNGC | 5 cut(s) | 44, 67, 249, 301, 308 |
| BstDEI | CTNAG | 2 cut(s) | 177, 357 |
| BstDSI | CCRYGG | 1 cut(s) | 301 |
| BstF5I | GGATG | 3 cut(s) | 18, 27, 301 |
| BstFNI | CGCG | 3 cut(s) | 28, 164, 303 |
| BstKTI | GATC | 1 cut(s) | 207 |
| BstMAI | GTCTC | 2 cut(s) | 24, 360 |
| BstMBI | GATC | 1 cut(s) | 204 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 66, 296 |
| BstNSI | RCATGY | 1 cut(s) | 355 |
| BstSLI | GKGCMC | 1 cut(s) | 44 |
| BstUI | CGCG | 3 cut(s) | 28, 164, 303 |
| BstV1I | GCAGC | 1 cut(s) | 202 |
| Bsu36I | CCTNAGG | 1 cut(s) | 177 |
| BsuRI | GGCC | 4 cut(s) | 42, 60, 126, 236 |
| BtgI | CCRYGG | 1 cut(s) | 301 |
| BtgZI | GCGATG | 1 cut(s) | 305 |
| BtsCI | GGATG | 3 cut(s) | 18, 27, 301 |
| Cac8I | GCNNGC | 5 cut(s) | 44, 67, 249, 301, 308 |
| Cfr13I | GGNCC | 4 cut(s) | 40, 41, 253, 331 |
| Cfr42I | CCGCGG | 1 cut(s) | 304 |
| CseI | GACGC | 2 cut(s) | 34, 153 |
| CviAII | CATG | 3 cut(s) | 146, 352, 368 |
| DdeI | CTNAG | 2 cut(s) | 177, 357 |
| DpnI | GATC | 1 cut(s) | 206 |
| DpnII | GATC | 1 cut(s) | 204 |
| DriI | GACNNNNNGTC | 1 cut(s) | 352 |
| EaeI | YGGCCR | 1 cut(s) | 124 |
| Eam1104I | CTCTTC | 1 cut(s) | 2 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 352 |
| EarI | CTCTTC | 1 cut(s) | 2 |
| Eco130I | CCWWGG | 1 cut(s) | 273 |
| Eco24I | GRGCYC | 1 cut(s) | 44 |
| Eco31I | GGTCTC | 1 cut(s) | 24 |
| Eco47I | GGWCC | 2 cut(s) | 253, 331 |
| Eco57I | CTGAAG | 1 cut(s) | 215 |
| Eco81I | CCTNAGG | 1 cut(s) | 177 |
| EcoO109I | RGGNCCY | 2 cut(s) | 40, 331 |
| EcoT14I | CCWWGG | 1 cut(s) | 273 |
| EcoT38I | GRGCYC | 1 cut(s) | 44 |
| ErhI | CCWWGG | 1 cut(s) | 273 |
| FaeI | CATG | 3 cut(s) | 149, 355, 371 |
| FaiI | YATR | 5 cut(s) | 147, 288, 353, 369, 374 |
| FaqI | GGGAC | 1 cut(s) | 344 |
| FatI | CATG | 3 cut(s) | 145, 351, 367 |
| FauI | CCCGC | 3 cut(s) | 51, 308, 321 |
| Fnu4HI | GCNGC | 4 cut(s) | 162, 188, 191, 304 |
| FokI | GGATG | 3 cut(s) | 25, 34, 308 |
| FriOI | GRGCYC | 1 cut(s) | 44 |
| Fsp4HI | GCNGC | 4 cut(s) | 162, 188, 191, 304 |
| FspBI | CTAG | 1 cut(s) | 248 |
| GluI | GCNGC | 4 cut(s) | 162, 188, 191, 304 |
| GsaI | CCCAGC | 1 cut(s) | 88 |
| HaeIII | GGCC | 4 cut(s) | 42, 60, 126, 236 |
| HgaI | GACGC | 2 cut(s) | 34, 153 |
| Hin1II | CATG | 3 cut(s) | 149, 355, 371 |
| HinfI | GANTC | 1 cut(s) | 262 |
| Hpy188III | TCNNGA | 1 cut(s) | 215 |
| Hpy99I | CGWCG | 1 cut(s) | 140 |
| HpyAV | CCTTC | 2 cut(s) | 50, 190 |
| HpyCH4III | ACNGT | 2 cut(s) | 76, 102 |
| HpyCH4V | TGCA | 2 cut(s) | 145, 229 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 66, 296 |
| HpyF3I | CTNAG | 2 cut(s) | 177, 357 |
| Hsp92II | CATG | 3 cut(s) | 149, 355, 371 |
| KspI | CCGCGG | 1 cut(s) | 304 |
| Kzo9I | GATC | 1 cut(s) | 204 |
| LpnPI | CCDG | 5 cut(s) | 70, 164, 185, 215, 347 |
| Lsp1109I | GCAGC | 1 cut(s) | 202 |
| LweI | GCATC | 1 cut(s) | 286 |
| MaeI | CTAG | 1 cut(s) | 248 |
| MaeIII | GTNAC | 1 cut(s) | 212 |
| MalI | GATC | 1 cut(s) | 206 |
| MbiI | CCGCTC | 2 cut(s) | 187, 328 |
| MboI | GATC | 1 cut(s) | 204 |
| MboII | GAAGA | 2 cut(s) | 19, 65 |
| MhlI | GDGCHC | 1 cut(s) | 44 |
| MlsI | TGGCCA | 1 cut(s) | 126 |
| MluCI | AATT | 1 cut(s) | 224 |
| MluNI | TGGCCA | 1 cut(s) | 126 |
| MlyI | GAGTC | 1 cut(s) | 271 |
| MnlI | CCTC | 9 cut(s) | 3, 9, 80, 167, 186, 193, 213, 226, 344 |
| Mox20I | TGGCCA | 1 cut(s) | 126 |
| MscI | TGGCCA | 1 cut(s) | 126 |
| Msp20I | TGGCCA | 1 cut(s) | 126 |
| MspA1I | CMGCKG | 3 cut(s) | 193, 303, 361 |
| MvnI | CGCG | 3 cut(s) | 28, 164, 303 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 66, 296 |
| NdeII | GATC | 1 cut(s) | 204 |
| NheI | GCTAGC | 1 cut(s) | 247 |
| NlaIII | CATG | 3 cut(s) | 149, 355, 371 |
| NlaIV | GGNNCC | 3 cut(s) | 41, 42, 332 |
| NmuCI | GTSAC | 1 cut(s) | 212 |
| NspI | RCATGY | 1 cut(s) | 355 |
| PciI | ACATGT | 1 cut(s) | 351 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 342 |
| PkrI | GCNGC | 4 cut(s) | 163, 189, 192, 305 |
| PleI | GAGTC | 1 cut(s) | 270 |
| PpsI | GAGTC | 1 cut(s) | 270 |
| PpuMI | RGGWCCY | 1 cut(s) | 331 |
| PscI | ACATGT | 1 cut(s) | 351 |
| Psp5II | RGGWCCY | 1 cut(s) | 331 |
| PspFI | CCCAGC | 1 cut(s) | 84 |
| PspN4I | GGNNCC | 3 cut(s) | 41, 42, 332 |
| PspOMI | GGGCCC | 1 cut(s) | 40 |
| PspPI | GGNCC | 4 cut(s) | 40, 41, 253, 331 |
| PspPPI | RGGWCCY | 1 cut(s) | 331 |
| PvuII | CAGCTG | 2 cut(s) | 193, 361 |
| SacII | CCGCGG | 1 cut(s) | 304 |
| SatI | GCNGC | 4 cut(s) | 162, 188, 191, 304 |
| Sau3AI | GATC | 1 cut(s) | 204 |
| Sau96I | GGNCC | 4 cut(s) | 40, 41, 253, 331 |
| SchI | GAGTC | 1 cut(s) | 271 |
| SduI | GDGCHC | 1 cut(s) | 44 |
| SfaNI | GCATC | 1 cut(s) | 286 |
| Sfr303I | CCGCGG | 1 cut(s) | 304 |
| SgrBI | CCGCGG | 1 cut(s) | 304 |
| SinI | GGWCC | 2 cut(s) | 253, 331 |
| SmlI | CTYRAG | 1 cut(s) | 257 |
| SmoI | CTYRAG | 1 cut(s) | 257 |
| Sse9I | AATT | 1 cut(s) | 224 |
| SsiI | CCGC | 7 cut(s) | 44, 162, 187, 251, 301, 303, 328 |
| SspMI | CTAG | 1 cut(s) | 248 |
| StyI | CCWWGG | 1 cut(s) | 273 |
| TaaI | ACNGT | 2 cut(s) | 76, 102 |
| TaqI | TCGA | 1 cut(s) | 336 |
| TasI | AATT | 1 cut(s) | 224 |
| TauI | GCSGC | 3 cut(s) | 164, 190, 306 |
| TseFI | GTSAC | 1 cut(s) | 212 |
| TseI | GCWGC | 1 cut(s) | 190 |
| Tsp45I | GTSAC | 1 cut(s) | 212 |
| TspDTI | ATGAA | 1 cut(s) | 20 |
| TspGWI | ACGGA | 2 cut(s) | 124, 355 |
| VpaK11BI | GGWCC | 2 cut(s) | 253, 331 |
| XceI | RCATGY | 1 cut(s) | 355 |
| XspI | CTAG | 1 cut(s) | 248 |