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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 12 |
| AccB1I | GGYRCC | 3 cut(s) | 84, 338, 400 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 384 |
| AccBSI | CCGCTC | 3 cut(s) | 82, 449, 498 |
| AccII | CGCG | 1 cut(s) | 536 |
| AclWI | GGATC | 1 cut(s) | 169 |
| AcoI | YGGCCR | 1 cut(s) | 478 |
| AcsI | RAATTY | 1 cut(s) | 521 |
| AcuI | CTGAAG | 2 cut(s) | 164, 714 |
| AcyI | GRCGYC | 2 cut(s) | 9, 548 |
| AfaI | GTAC | 2 cut(s) | 305, 445 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 138, 139, 184, 265, 384, 458, 481, 576 |
| AflIII | ACRYGT | 1 cut(s) | 126 |
| AgsI | TTSAA | 2 cut(s) | 281, 488 |
| AjnI | CCWGG | 5 cut(s) | 53, 87, 240, 475, 480 |
| AleI | CACNNNNGTG | 1 cut(s) | 597 |
| AluBI | AGCT | 4 cut(s) | 217, 347, 395, 428 |
| AluI | AGCT | 4 cut(s) | 217, 347, 395, 428 |
| AlwI | GGATC | 1 cut(s) | 169 |
| Ama87I | CYCGRG | 2 cut(s) | 499, 636 |
| AoxI | GGCC | 8 cut(s) | 30, 256, 333, 460, 478, 537, 588, 675 |
| ApeKI | GCWGC | 7 cut(s) | 136, 217, 263, 326, 361, 364, 412 |
| ApoI | RAATTY | 1 cut(s) | 521 |
| AspLEI | GCGC | 2 cut(s) | 536, 575 |
| AspS9I | GGNCC | 4 cut(s) | 142, 461, 538, 589 |
| AsuC2I | CCSGG | 1 cut(s) | 146 |
| AsuHPI | GGTGA | 3 cut(s) | 160, 239, 530 |
| AvaI | CYCGRG | 2 cut(s) | 499, 636 |
| AvaII | GGWCC | 1 cut(s) | 142 |
| BalI | TGGCCA | 1 cut(s) | 480 |
| BanI | GGYRCC | 3 cut(s) | 84, 338, 400 |
| BanII | GRGCYC | 1 cut(s) | 496 |
| BbvCI | CCTCAGC | 1 cut(s) | 249 |
| BbvI | GCAGC | 7 cut(s) | 123, 204, 250, 338, 348, 376, 424 |
| BccI | CCATC | 3 cut(s) | 424, 599, 672 |
| BceAI | ACGGC | 3 cut(s) | 52, 243, 642 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 23, 57 |
| BciT130I | CCWGG | 5 cut(s) | 55, 89, 242, 477, 482 |
| BcnI | CCSGG | 1 cut(s) | 146 |
| BfaI | CTAG | 1 cut(s) | 624 |
| BfmI | CTRYAG | 1 cut(s) | 362 |
| Bme1390I | CCNGG | 6 cut(s) | 55, 89, 146, 242, 477, 482 |
| Bme18I | GGWCC | 1 cut(s) | 142 |
| BmeT110I | CYCGRG | 2 cut(s) | 499, 636 |
| BmgT120I | GGNCC | 4 cut(s) | 142, 461, 538, 589 |
| BmiI | GGNNCC | 7 cut(s) | 86, 143, 340, 376, 402, 493, 706 |
| BmrFI | CCNGG | 6 cut(s) | 55, 89, 146, 242, 477, 482 |
| BmrI | ACTGGG | 1 cut(s) | 394 |
| BmsI | GCATC | 4 cut(s) | 31, 40, 348, 679 |
| BmuI | ACTGGG | 1 cut(s) | 394 |
| BpmI | CTGGAG | 3 cut(s) | 110, 242, 263 |
| Bpu10I | CCTNAGC | 2 cut(s) | 249, 343 |
| BpuMI | CCSGG | 1 cut(s) | 146 |
| BsaHI | GRCGYC | 2 cut(s) | 9, 548 |
| BsaJI | CCNNGG | 6 cut(s) | 54, 111, 321, 420, 475, 637 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 696, 726 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 138, 139, 184, 265, 384, 458, 481, 576 |
| Bse118I | RCCGGY | 2 cut(s) | 335, 403 |
| Bse1I | ACTGG | 3 cut(s) | 389, 441, 681 |
| BseBI | CCWGG | 5 cut(s) | 55, 89, 242, 477, 482 |
| BseDI | CCNNGG | 6 cut(s) | 54, 111, 321, 420, 475, 637 |
| BseGI | GGATG | 3 cut(s) | 10, 416, 664 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 138, 139, 184, 265, 384, 458, 481, 576 |
| BseMII | CTCAG | 2 cut(s) | 240, 552 |
| BseNI | ACTGG | 3 cut(s) | 389, 441, 681 |
| BseXI | GCAGC | 7 cut(s) | 123, 204, 250, 338, 348, 376, 424 |
| BseYI | CCCAGC | 2 cut(s) | 540, 575 |
| BsgI | GTGCAG | 1 cut(s) | 431 |
| Bsh1236I | CGCG | 1 cut(s) | 536 |
| Bsh1285I | CGRYCG | 1 cut(s) | 408 |
| BshFI | GGCC | 8 cut(s) | 32, 258, 335, 462, 480, 539, 590, 677 |
| BshNI | GGYRCC | 3 cut(s) | 84, 338, 400 |
| BsiEI | CGRYCG | 1 cut(s) | 408 |
| BsiHKCI | CYCGRG | 2 cut(s) | 499, 636 |
| BsiSI | CCGG | 3 cut(s) | 145, 336, 404 |
| BslFI | GGGAC | 3 cut(s) | 115, 155, 612 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 138, 139, 184, 265, 384, 458, 481, 576 |
| BsmFI | GGGAC | 3 cut(s) | 115, 155, 612 |
| BsnI | GGCC | 8 cut(s) | 32, 258, 335, 462, 480, 539, 590, 677 |
| BsoBI | CYCGRG | 2 cut(s) | 499, 636 |
| Bsp1286I | GDGCHC | 1 cut(s) | 496 |
| Bsp143I | GATC | 2 cut(s) | 174, 210 |
| BspANI | GGCC | 8 cut(s) | 32, 258, 335, 462, 480, 539, 590, 677 |
| BspCNI | CTCAG | 2 cut(s) | 241, 553 |
| BspFNI | CGCG | 1 cut(s) | 536 |
| BspLI | GGNNCC | 7 cut(s) | 86, 143, 340, 376, 402, 493, 706 |
| BspMAI | CTGCAG | 1 cut(s) | 366 |
| BspPI | GGATC | 1 cut(s) | 169 |
| BspT107I | GGYRCC | 3 cut(s) | 84, 338, 400 |
| BsrBI | CCGCTC | 3 cut(s) | 82, 449, 498 |
| BsrFI | RCCGGY | 2 cut(s) | 335, 403 |
| BsrI | ACTGG | 3 cut(s) | 389, 441, 681 |
| BssAI | RCCGGY | 2 cut(s) | 335, 403 |
| BssECI | CCNNGG | 6 cut(s) | 54, 111, 321, 420, 475, 637 |
| BssMI | GATC | 2 cut(s) | 174, 210 |
| BssNI | GRCGYC | 2 cut(s) | 9, 548 |
| BssT1I | CCWWGG | 2 cut(s) | 111, 420 |
| Bst2UI | CCWGG | 5 cut(s) | 55, 89, 242, 477, 482 |
| Bst4CI | ACNGT | 1 cut(s) | 613 |
| BstACI | GRCGYC | 2 cut(s) | 9, 548 |
| BstC8I | GCNNGC | 4 cut(s) | 238, 460, 496, 675 |
| BstDEI | CTNAG | 3 cut(s) | 249, 343, 561 |
| BstEII | GGTNACC | 1 cut(s) | 268 |
| BstF5I | GGATG | 3 cut(s) | 10, 416, 664 |
| BstFNI | CGCG | 1 cut(s) | 536 |
| BstHHI | GCGC | 2 cut(s) | 536, 575 |
| BstKTI | GATC | 2 cut(s) | 177, 213 |
| BstMBI | GATC | 2 cut(s) | 174, 210 |
| BstMCI | CGRYCG | 1 cut(s) | 408 |
| BstNI | CCWGG | 5 cut(s) | 55, 89, 242, 477, 482 |
| BstNSI | RCATGY | 1 cut(s) | 130 |
| BstPI | GGTNACC | 1 cut(s) | 268 |
| BstSCI | CCNGG | 6 cut(s) | 53, 87, 144, 240, 475, 480 |
| BstSFI | CTRYAG | 1 cut(s) | 362 |
| BstUI | CGCG | 1 cut(s) | 536 |
| BstV1I | GCAGC | 7 cut(s) | 123, 204, 250, 338, 348, 376, 424 |
| BstX2I | RGATCY | 1 cut(s) | 174 |
| BstYI | RGATCY | 1 cut(s) | 174 |
| BsuRI | GGCC | 8 cut(s) | 32, 258, 335, 462, 480, 539, 590, 677 |
| BtgZI | GCGATG | 1 cut(s) | 54 |
| BtsCI | GGATG | 3 cut(s) | 10, 416, 664 |
| BtsI | GCAGTG | 1 cut(s) | 453 |
| BtsIMutI | CAGTG | 3 cut(s) | 314, 453, 688 |
| Cac8I | GCNNGC | 4 cut(s) | 238, 460, 496, 675 |
| CfoI | GCGC | 2 cut(s) | 536, 575 |
| Cfr10I | RCCGGY | 2 cut(s) | 335, 403 |
| Cfr13I | GGNCC | 4 cut(s) | 142, 461, 538, 589 |
| CseI | GACGC | 1 cut(s) | 556 |
| Csp6I | GTAC | 2 cut(s) | 304, 444 |
| CviAII | CATG | 1 cut(s) | 127 |
| CviQI | GTAC | 2 cut(s) | 304, 444 |
| DdeI | CTNAG | 3 cut(s) | 249, 343, 561 |
| DpnI | GATC | 2 cut(s) | 176, 212 |
| DpnII | GATC | 2 cut(s) | 174, 210 |
| EaeI | YGGCCR | 1 cut(s) | 478 |
| EciI | GGCGGA | 3 cut(s) | 131, 314, 420 |
| Eco130I | CCWWGG | 2 cut(s) | 111, 420 |
| Eco24I | GRGCYC | 1 cut(s) | 496 |
| Eco47I | GGWCC | 1 cut(s) | 142 |
| Eco57I | CTGAAG | 2 cut(s) | 164, 714 |
| Eco88I | CYCGRG | 2 cut(s) | 499, 636 |
| Eco91I | GGTNACC | 1 cut(s) | 268 |
| EcoO65I | GGTNACC | 1 cut(s) | 268 |
| EcoRI | GAATTC | 1 cut(s) | 521 |
| EcoRII | CCWGG | 5 cut(s) | 53, 87, 240, 475, 480 |
| EcoT14I | CCWWGG | 2 cut(s) | 111, 420 |
| EcoT38I | GRGCYC | 1 cut(s) | 496 |
| ErhI | CCWWGG | 2 cut(s) | 111, 420 |
| FaeI | CATG | 1 cut(s) | 130 |
| FaiI | YATR | 3 cut(s) | 128, 286, 288 |
| FaqI | GGGAC | 3 cut(s) | 115, 155, 612 |
| FatI | CATG | 1 cut(s) | 126 |
| FauI | CCCGC | 4 cut(s) | 132, 177, 503, 730 |
| FokI | GGATG | 3 cut(s) | 17, 403, 651 |
| FriOI | GRGCYC | 1 cut(s) | 496 |
| FspBI | CTAG | 1 cut(s) | 624 |
| GlaI | GCGC | 2 cut(s) | 535, 574 |
| GsaI | CCCAGC | 2 cut(s) | 544, 579 |
| GsuI | CTGGAG | 3 cut(s) | 110, 242, 263 |
| HaeIII | GGCC | 8 cut(s) | 32, 258, 335, 462, 480, 539, 590, 677 |
| HapII | CCGG | 3 cut(s) | 145, 336, 404 |
| HgaI | GACGC | 1 cut(s) | 556 |
| HhaI | GCGC | 2 cut(s) | 536, 575 |
| Hin1I | GRCGYC | 2 cut(s) | 9, 548 |
| Hin1II | CATG | 1 cut(s) | 130 |
| Hin6I | GCGC | 2 cut(s) | 534, 573 |
| HinP1I | GCGC | 2 cut(s) | 534, 573 |
| HindIII | AAGCTT | 1 cut(s) | 393 |
| HinfI | GANTC | 2 cut(s) | 188, 281 |
| HpaII | CCGG | 3 cut(s) | 145, 336, 404 |
| HphI | GGTGA | 3 cut(s) | 160, 239, 530 |
| Hpy188I | TCNGA | 2 cut(s) | 562, 646 |
| Hpy99I | CGWCG | 4 cut(s) | 14, 21, 38, 713 |
| HpyAV | CCTTC | 5 cut(s) | 151, 188, 325, 482, 689 |
| HpyCH4III | ACNGT | 1 cut(s) | 613 |
| HpyCH4IV | ACGT | 4 cut(s) | 9, 19, 69, 711 |
| HpyCH4V | TGCA | 2 cut(s) | 364, 412 |
| HpyF3I | CTNAG | 3 cut(s) | 249, 343, 561 |
| HpySE526I | ACGT | 4 cut(s) | 9, 19, 69, 711 |
| Hsp92I | GRCGYC | 2 cut(s) | 9, 548 |
| Hsp92II | CATG | 1 cut(s) | 130 |
| HspAI | GCGC | 2 cut(s) | 534, 573 |
| Kzo9I | GATC | 2 cut(s) | 174, 210 |
| LmnI | GCTCC | 7 cut(s) | 91, 118, 374, 433, 454, 491, 704 |
| Lsp1109I | GCAGC | 7 cut(s) | 123, 204, 250, 338, 348, 376, 424 |
| LweI | GCATC | 4 cut(s) | 31, 40, 348, 679 |
| MaeI | CTAG | 1 cut(s) | 624 |
| MaeII | ACGT | 4 cut(s) | 9, 19, 69, 711 |
| MaeIII | GTNAC | 2 cut(s) | 148, 268 |
| MalI | GATC | 2 cut(s) | 176, 212 |
| MbiI | CCGCTC | 3 cut(s) | 82, 449, 498 |
| MboI | GATC | 2 cut(s) | 174, 210 |
| MboII | GAAGA | 1 cut(s) | 175 |
| MflI | RGATCY | 1 cut(s) | 174 |
| MhlI | GDGCHC | 1 cut(s) | 496 |
| MlsI | TGGCCA | 1 cut(s) | 480 |
| MluCI | AATT | 1 cut(s) | 521 |
| MluNI | TGGCCA | 1 cut(s) | 480 |
| MlyI | GAGTC | 1 cut(s) | 197 |
| MnlI | CCTC | 8 cut(s) | 217, 238, 244, 248, 316, 481, 523, 632 |
| Mox20I | TGGCCA | 1 cut(s) | 480 |
| MscI | TGGCCA | 1 cut(s) | 480 |
| MslI | CAYNNNNRTG | 1 cut(s) | 597 |
| Msp20I | TGGCCA | 1 cut(s) | 480 |
| MspA1I | CMGCKG | 3 cut(s) | 184, 275, 544 |
| MspI | CCGG | 3 cut(s) | 145, 336, 404 |
| MspR9I | CCNGG | 6 cut(s) | 55, 89, 146, 242, 477, 482 |
| MvaI | CCWGG | 5 cut(s) | 55, 89, 242, 477, 482 |
| MvnI | CGCG | 1 cut(s) | 536 |
| NciI | CCSGG | 1 cut(s) | 146 |
| NdeII | GATC | 2 cut(s) | 174, 210 |
| NlaIII | CATG | 1 cut(s) | 130 |
| NlaIV | GGNNCC | 7 cut(s) | 86, 143, 340, 376, 402, 493, 706 |
| NmuCI | GTSAC | 1 cut(s) | 148 |
| NspI | RCATGY | 1 cut(s) | 130 |
| OliI | CACNNNNGTG | 1 cut(s) | 597 |
| PciI | ACATGT | 1 cut(s) | 126 |
| PfeI | GAWTC | 1 cut(s) | 281 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 384 |
| PleI | GAGTC | 1 cut(s) | 196 |
| PpsI | GAGTC | 1 cut(s) | 196 |
| PscI | ACATGT | 1 cut(s) | 126 |
| Psp6I | CCWGG | 5 cut(s) | 53, 87, 240, 475, 480 |
| PspEI | GGTNACC | 1 cut(s) | 268 |
| PspFI | CCCAGC | 2 cut(s) | 540, 575 |
| PspGI | CCWGG | 5 cut(s) | 53, 87, 240, 475, 480 |
| PspN4I | GGNNCC | 7 cut(s) | 86, 143, 340, 376, 402, 493, 706 |
| PspPI | GGNCC | 4 cut(s) | 142, 461, 538, 589 |
| PstI | CTGCAG | 1 cut(s) | 366 |
| PsuI | RGATCY | 1 cut(s) | 174 |
| RsaI | GTAC | 2 cut(s) | 305, 445 |
| RsaNI | GTAC | 2 cut(s) | 304, 444 |
| RseI | CAYNNNNRTG | 1 cut(s) | 597 |
| Sau3AI | GATC | 2 cut(s) | 174, 210 |
| Sau96I | GGNCC | 4 cut(s) | 142, 461, 538, 589 |
| SchI | GAGTC | 1 cut(s) | 197 |
| ScrFI | CCNGG | 6 cut(s) | 55, 89, 146, 242, 477, 482 |
| SduI | GDGCHC | 1 cut(s) | 496 |
| SfaNI | GCATC | 4 cut(s) | 31, 40, 348, 679 |
| SfcI | CTRYAG | 1 cut(s) | 362 |
| SinI | GGWCC | 1 cut(s) | 142 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 597 |
| Sse9I | AATT | 1 cut(s) | 521 |
| SspMI | CTAG | 1 cut(s) | 624 |
| StyD4I | CCNGG | 6 cut(s) | 53, 87, 144, 240, 475, 480 |
| StyI | CCWWGG | 2 cut(s) | 111, 420 |
| TaaI | ACNGT | 1 cut(s) | 613 |
| TaiI | ACGT | 4 cut(s) | 12, 22, 72, 714 |
| TaqI | TCGA | 1 cut(s) | 12 |
| TaqII | GACCGA | 1 cut(s) | 335 |
| TasI | AATT | 1 cut(s) | 521 |
| TatI | WGTACW | 1 cut(s) | 303 |
| TauI | GCSGC | 5 cut(s) | 47, 85, 197, 539, 590 |
| TfiI | GAWTC | 1 cut(s) | 281 |
| TscAI | CASTG | 3 cut(s) | 321, 460, 688 |
| TseFI | GTSAC | 1 cut(s) | 148 |
| TseI | GCWGC | 7 cut(s) | 136, 217, 263, 326, 361, 364, 412 |
| Tsp45I | GTSAC | 1 cut(s) | 148 |
| TspRI | CASTG | 3 cut(s) | 321, 460, 688 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 384 |
| VpaK11BI | GGWCC | 1 cut(s) | 142 |
| XapI | RAATTY | 1 cut(s) | 521 |
| XceI | RCATGY | 1 cut(s) | 130 |
| XspI | CTAG | 1 cut(s) | 624 |
| ZraI | GACGTC | 1 cut(s) | 10 |