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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 2 cut(s) | 12, 1536 |
| Acc36I | ACCTGC | 2 cut(s) | 393, 540 |
| AccB1I | GGYRCC | 7 cut(s) | 263, 335, 523, 1608, 1862, 1898, 1924 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 159, 588, 1456, 1908 |
| AccBSI | CCGCTC | 7 cut(s) | 884, 1251, 1465, 1606, 1627, 1973, 2022 |
| AccI | GTMKAC | 1 cut(s) | 1364 |
| AccII | CGCG | 5 cut(s) | 479, 1028, 1179, 1679, 2060 |
| AccIII | TCCGGA | 2 cut(s) | 38, 190 |
| AclWI | GGATC | 5 cut(s) | 49, 183, 1102, 1115, 1693 |
| AcoI | YGGCCR | 3 cut(s) | 3, 1596, 2002 |
| AcsI | RAATTY | 2 cut(s) | 73, 2045 |
| AcuI | CTGAAG | 6 cut(s) | 66, 410, 1097, 1245, 1372, 1688 |
| AcvI | CACGTG | 1 cut(s) | 908 |
| AcyI | GRCGYC | 6 cut(s) | 9, 264, 1442, 1533, 1925, 2072 |
| AdeI | CACNNNGTG | 1 cut(s) | 987 |
| AfaI | GTAC | 5 cut(s) | 660, 683, 776, 1829, 1969 |
| AflIII | ACRYGT | 2 cut(s) | 585, 905 |
| AgsI | TTSAA | 5 cut(s) | 382, 456, 1038, 1805, 2012 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 769 |
| AjiI | CACGTC | 1 cut(s) | 1408 |
| AleI | CACNNNNGTG | 1 cut(s) | 521 |
| Alw21I | GWGCWC | 1 cut(s) | 486 |
| Alw26I | GTCTC | 2 cut(s) | 980, 994 |
| Alw44I | GTGCAC | 1 cut(s) | 482 |
| AlwI | GGATC | 5 cut(s) | 49, 183, 1102, 1115, 1693 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1456 |
| Ama87I | CYCGRG | 4 cut(s) | 1211, 2023, 2121, 2160 |
| Aor13HI | TCCGGA | 2 cut(s) | 38, 190 |
| ApaI | GGGCCC | 1 cut(s) | 1177 |
| ApaLI | GTGCAC | 1 cut(s) | 482 |
| ApoI | RAATTY | 2 cut(s) | 73, 2045 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1111, 1143 |
| AspLEI | GCGC | 8 cut(s) | 246, 266, 607, 693, 739, 1125, 1927, 2060 |
| AspS9I | GGNCC | 9 cut(s) | 469, 641, 1050, 1173, 1174, 1489, 1513, 1666, 2113 |
| AsuC2I | CCSGG | 5 cut(s) | 985, 1171, 1670, 2122, 2123 |
| AsuHPI | GGTGA | 8 cut(s) | 430, 719, 973, 1159, 1307, 1307, 1684, 1763 |
| AsuNHI | GCTAGC | 1 cut(s) | 1525 |
| AvaI | CYCGRG | 4 cut(s) | 1211, 2023, 2121, 2160 |
| AvaII | GGWCC | 3 cut(s) | 641, 1050, 1666 |
| AxyI | CCTNAGG | 1 cut(s) | 758 |
| BaeGI | GKGCMC | 4 cut(s) | 486, 581, 1177, 1407 |
| BalI | TGGCCA | 2 cut(s) | 1598, 2004 |
| BamHI | GGATCC | 1 cut(s) | 1107 |
| BanI | GGYRCC | 7 cut(s) | 263, 335, 523, 1608, 1862, 1898, 1924 |
| BanII | GRGCYC | 3 cut(s) | 1177, 1422, 2020 |
| BauI | CACGAG | 2 cut(s) | 485, 1424 |
| BbrPI | CACGTG | 1 cut(s) | 908 |
| Bbv12I | GWGCWC | 1 cut(s) | 486 |
| BbvCI | CCTCAGC | 2 cut(s) | 1472, 1773 |
| BccI | CCATC | 5 cut(s) | 1064, 1553, 1910, 1948, 2196 |
| BceAI | ACGGC | 6 cut(s) | 349, 1110, 1355, 1397, 1767, 2166 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1547, 1581 |
| BciVI | GTATCC | 1 cut(s) | 298 |
| BcnI | CCSGG | 5 cut(s) | 985, 1171, 1670, 2122, 2123 |
| BcoDI | GTCTC | 2 cut(s) | 980, 994 |
| BfaI | CTAG | 4 cut(s) | 131, 248, 1526, 2148 |
| BfmI | CTRYAG | 4 cut(s) | 146, 533, 1233, 1886 |
| BfoI | RGCGCY | 7 cut(s) | 247, 267, 608, 694, 740, 1126, 1928 |
| BfuAI | ACCTGC | 2 cut(s) | 393, 540 |
| BfuI | GTATCC | 1 cut(s) | 298 |
| Bme18I | GGWCC | 3 cut(s) | 641, 1050, 1666 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 769 |
| BmeT110I | CYCGRG | 4 cut(s) | 1211, 2023, 2121, 2160 |
| BmgBI | CACGTC | 1 cut(s) | 1408 |
| BmgT120I | GGNCC | 9 cut(s) | 469, 641, 1050, 1173, 1174, 1489, 1513, 1666, 2113 |
| BmrI | ACTGGG | 4 cut(s) | 1340, 1918, 2059, 2109 |
| BmsI | GCATC | 7 cut(s) | 196, 567, 942, 1555, 1564, 1872, 2203 |
| BmtI | GCTAGC | 1 cut(s) | 1529 |
| BmuI | ACTGGG | 4 cut(s) | 1340, 1918, 2059, 2109 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1370 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 498, 530 |
| BpmI | CTGGAG | 4 cut(s) | 1123, 1478, 1634, 1766 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1472, 1773, 1867 |
| BpuMI | CCSGG | 5 cut(s) | 985, 1171, 1670, 2122, 2123 |
| BsaAI | YACGTR | 2 cut(s) | 685, 908 |
| BsaHI | GRCGYC | 6 cut(s) | 9, 264, 1442, 1533, 1925, 2072 |
| BsaI | GGTCTC | 1 cut(s) | 994 |
| BsaWI | WCCGGW | 3 cut(s) | 38, 190, 402 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 833, 863, 1295, 1325, 1770, 1800, 2220, 2250 |
| Bse118I | RCCGGY | 3 cut(s) | 463, 1859, 1927 |
| Bse1I | ACTGG | 9 cut(s) | 681, 782, 1022, 1140, 1335, 1913, 1965, 2065, 2104 |
| Bse21I | CCTNAGG | 1 cut(s) | 758 |
| Bse3DI | GCAATG | 3 cut(s) | 86, 795, 1052 |
| BseAI | TCCGGA | 2 cut(s) | 38, 190 |
| BseGI | GGATG | 5 cut(s) | 187, 369, 1056, 1940, 2188 |
| BseMI | GCAATG | 3 cut(s) | 86, 795, 1052 |
| BseMII | CTCAG | 5 cut(s) | 733, 749, 1463, 1764, 2076 |
| BseNI | ACTGG | 9 cut(s) | 681, 782, 1022, 1140, 1335, 1913, 1965, 2065, 2104 |
| BseRI | GAGGAG | 5 cut(s) | 254, 458, 968, 1166, 1169 |
| BseSI | GKGCMC | 4 cut(s) | 486, 581, 1177, 1407 |
| BseYI | CCCAGC | 1 cut(s) | 410 |
| BsgI | GTGCAG | 3 cut(s) | 126, 1955, 2116 |
| Bsh1236I | CGCG | 5 cut(s) | 479, 1028, 1179, 1679, 2060 |
| Bsh1285I | CGRYCG | 4 cut(s) | 648, 1364, 1368, 1932 |
| BshNI | GGYRCC | 7 cut(s) | 263, 335, 523, 1608, 1862, 1898, 1924 |
| BsiEI | CGRYCG | 4 cut(s) | 648, 1364, 1368, 1932 |
| BsiHKAI | GWGCWC | 1 cut(s) | 486 |
| BsiHKCI | CYCGRG | 4 cut(s) | 1211, 2023, 2121, 2160 |
| BslFI | GGGAC | 5 cut(s) | 776, 1514, 1679, 2077, 2136 |
| BsmAI | GTCTC | 2 cut(s) | 980, 994 |
| BsmBI | CGTCTC | 1 cut(s) | 980 |
| BsmFI | GGGAC | 5 cut(s) | 776, 1514, 1679, 2077, 2136 |
| Bso31I | GGTCTC | 1 cut(s) | 994 |
| BsoBI | CYCGRG | 4 cut(s) | 1211, 2023, 2121, 2160 |
| Bsp120I | GGGCCC | 1 cut(s) | 1173 |
| Bsp1286I | GDGCHC | 6 cut(s) | 486, 581, 1177, 1407, 1422, 2020 |
| Bsp13I | TCCGGA | 2 cut(s) | 38, 190 |
| Bsp143I | GATC | 6 cut(s) | 41, 175, 747, 1107, 1698, 1734 |
| Bsp19I | CCATGG | 1 cut(s) | 801 |
| Bsp68I | TCGCGA | 1 cut(s) | 1028 |
| BspCNI | CTCAG | 5 cut(s) | 732, 750, 1464, 1765, 2077 |
| BspEI | TCCGGA | 2 cut(s) | 38, 190 |
| BspFNI | CGCG | 5 cut(s) | 479, 1028, 1179, 1679, 2060 |
| BspMAI | CTGCAG | 2 cut(s) | 537, 1890 |
| BspMI | ACCTGC | 2 cut(s) | 393, 540 |
| BspOI | GCTAGC | 1 cut(s) | 1529 |
| BspPI | GGATC | 5 cut(s) | 49, 183, 1102, 1115, 1693 |
| BspQI | GCTCTTC | 1 cut(s) | 2171 |
| BspT107I | GGYRCC | 7 cut(s) | 263, 335, 523, 1608, 1862, 1898, 1924 |
| BspTNI | GGTCTC | 1 cut(s) | 994 |
| BsrBI | CCGCTC | 7 cut(s) | 884, 1251, 1465, 1606, 1627, 1973, 2022 |
| BsrDI | GCAATG | 3 cut(s) | 86, 795, 1052 |
| BsrFI | RCCGGY | 3 cut(s) | 463, 1859, 1927 |
| BsrI | ACTGG | 9 cut(s) | 681, 782, 1022, 1140, 1335, 1913, 1965, 2065, 2104 |
| BssAI | RCCGGY | 3 cut(s) | 463, 1859, 1927 |
| BssMI | GATC | 6 cut(s) | 41, 175, 747, 1107, 1698, 1734 |
| BssNI | GRCGYC | 6 cut(s) | 9, 264, 1442, 1533, 1925, 2072 |
| BssSI | CACGAG | 2 cut(s) | 485, 1424 |
| BssT1I | CCWWGG | 3 cut(s) | 801, 1635, 1944 |
| Bst2BI | CACGAG | 2 cut(s) | 485, 1424 |
| Bst4CI | ACNGT | 5 cut(s) | 370, 439, 649, 1295, 2137 |
| Bst6I | CTCTTC | 3 cut(s) | 909, 1143, 2171 |
| BstACI | GRCGYC | 6 cut(s) | 9, 264, 1442, 1533, 1925, 2072 |
| BstBAI | YACGTR | 2 cut(s) | 685, 908 |
| BstDEI | CTNAG | 6 cut(s) | 719, 758, 1472, 1773, 1867, 2085 |
| BstDSI | CCRYGG | 5 cut(s) | 158, 477, 648, 801, 1069 |
| BstEII | GGTNACC | 2 cut(s) | 1165, 1672 |
| BstF5I | GGATG | 5 cut(s) | 187, 369, 1056, 1940, 2188 |
| BstFNI | CGCG | 5 cut(s) | 479, 1028, 1179, 1679, 2060 |
| BstH2I | RGCGCY | 7 cut(s) | 247, 267, 608, 694, 740, 1126, 1928 |
| BstHHI | GCGC | 8 cut(s) | 246, 266, 607, 693, 739, 1125, 1927, 2060 |
| BstKTI | GATC | 6 cut(s) | 44, 178, 750, 1110, 1701, 1737 |
| BstMAI | GTCTC | 2 cut(s) | 980, 994 |
| BstMBI | GATC | 6 cut(s) | 41, 175, 747, 1107, 1698, 1734 |
| BstMCI | CGRYCG | 4 cut(s) | 648, 1364, 1368, 1932 |
| BstNSI | RCATGY | 1 cut(s) | 589 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1370 |
| BstPI | GGTNACC | 2 cut(s) | 1165, 1672 |
| BstSFI | CTRYAG | 4 cut(s) | 146, 533, 1233, 1886 |
| BstSLI | GKGCMC | 4 cut(s) | 486, 581, 1177, 1407 |
| BstUI | CGCG | 5 cut(s) | 479, 1028, 1179, 1679, 2060 |
| BstX2I | RGATCY | 3 cut(s) | 41, 1107, 1698 |
| BstYI | RGATCY | 3 cut(s) | 41, 1107, 1698 |
| Bsu36I | CCTNAGG | 1 cut(s) | 758 |
| BsuI | GTATCC | 1 cut(s) | 298 |
| BtgI | CCRYGG | 5 cut(s) | 158, 477, 648, 801, 1069 |
| BtgZI | GCGATG | 2 cut(s) | 544, 1578 |
| BtrI | CACGTC | 1 cut(s) | 1408 |
| BtsCI | GGATG | 5 cut(s) | 187, 369, 1056, 1940, 2188 |
| BtsI | GCAGTG | 3 cut(s) | 34, 116, 1977 |
| BtsIMutI | CAGTG | 7 cut(s) | 34, 116, 1147, 1838, 1977, 2072, 2097 |
| BtuMI | TCGCGA | 1 cut(s) | 1028 |
| BveI | ACCTGC | 2 cut(s) | 393, 540 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1456 |
| CfoI | GCGC | 8 cut(s) | 246, 266, 607, 693, 739, 1125, 1927, 2060 |
| Cfr10I | RCCGGY | 3 cut(s) | 463, 1859, 1927 |
| Cfr13I | GGNCC | 9 cut(s) | 469, 641, 1050, 1173, 1174, 1489, 1513, 1666, 2113 |
| Cfr42I | CCGCGG | 1 cut(s) | 480 |
| Cfr9I | CCCGGG | 1 cut(s) | 2121 |
| CseI | GACGC | 7 cut(s) | 80, 171, 416, 1039, 1431, 1958, 2080 |
| Csp6I | GTAC | 5 cut(s) | 659, 682, 775, 1828, 1968 |
| CviAII | CATG | 5 cut(s) | 236, 586, 802, 1082, 2006 |
| CviQI | GTAC | 5 cut(s) | 659, 682, 775, 1828, 1968 |
| DdeI | CTNAG | 6 cut(s) | 719, 758, 1472, 1773, 1867, 2085 |
| DinI | GGCGCC | 2 cut(s) | 265, 1926 |
| DpnI | GATC | 6 cut(s) | 43, 177, 749, 1109, 1700, 1736 |
| DpnII | GATC | 6 cut(s) | 41, 175, 747, 1107, 1698, 1734 |
| DraIII | CACNNNGTG | 1 cut(s) | 987 |
| DriI | GACNNNNNGTC | 1 cut(s) | 769 |
| EaeI | YGGCCR | 3 cut(s) | 3, 1596, 2002 |
| Eam1104I | CTCTTC | 3 cut(s) | 909, 1143, 2171 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 769 |
| EarI | CTCTTC | 3 cut(s) | 909, 1143, 2171 |
| EciI | GGCGGA | 8 cut(s) | 80, 420, 488, 668, 1120, 1655, 1838, 1944 |
| Eco130I | CCWWGG | 3 cut(s) | 801, 1635, 1944 |
| Eco24I | GRGCYC | 3 cut(s) | 1177, 1422, 2020 |
| Eco31I | GGTCTC | 1 cut(s) | 994 |
| Eco47I | GGWCC | 3 cut(s) | 641, 1050, 1666 |
| Eco57I | CTGAAG | 6 cut(s) | 66, 410, 1097, 1245, 1372, 1688 |
| Eco72I | CACGTG | 1 cut(s) | 908 |
| Eco81I | CCTNAGG | 1 cut(s) | 758 |
| Eco88I | CYCGRG | 4 cut(s) | 1211, 2023, 2121, 2160 |
| Eco91I | GGTNACC | 2 cut(s) | 1165, 1672 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1173 |
| EcoO65I | GGTNACC | 2 cut(s) | 1165, 1672 |
| EcoRI | GAATTC | 1 cut(s) | 2045 |
| EcoT14I | CCWWGG | 3 cut(s) | 801, 1635, 1944 |
| EcoT38I | GRGCYC | 3 cut(s) | 1177, 1422, 2020 |
| EgeI | GGCGCC | 2 cut(s) | 265, 1926 |
| EheI | GGCGCC | 2 cut(s) | 265, 1926 |
| ErhI | CCWWGG | 3 cut(s) | 801, 1635, 1944 |
| Esp3I | CGTCTC | 1 cut(s) | 980 |
| FaeI | CATG | 5 cut(s) | 239, 589, 805, 1085, 2009 |
| FaqI | GGGAC | 5 cut(s) | 776, 1514, 1679, 2077, 2136 |
| FatI | CATG | 5 cut(s) | 235, 585, 801, 1081, 2005 |
| FblI | GTMKAC | 1 cut(s) | 1364 |
| FokI | GGATG | 5 cut(s) | 174, 376, 1043, 1927, 2175 |
| FriOI | GRGCYC | 3 cut(s) | 1177, 1422, 2020 |
| FspBI | CTAG | 4 cut(s) | 131, 248, 1526, 2148 |
| GlaI | GCGC | 8 cut(s) | 245, 265, 606, 692, 738, 1124, 1926, 2059 |
| GsaI | CCCAGC | 1 cut(s) | 414 |
| GsuI | CTGGAG | 4 cut(s) | 1123, 1478, 1634, 1766 |
| HaeII | RGCGCY | 7 cut(s) | 247, 267, 608, 694, 740, 1126, 1928 |
| HgaI | GACGC | 7 cut(s) | 80, 171, 416, 1039, 1431, 1958, 2080 |
| HhaI | GCGC | 8 cut(s) | 246, 266, 607, 693, 739, 1125, 1927, 2060 |
| Hin1I | GRCGYC | 6 cut(s) | 9, 264, 1442, 1533, 1925, 2072 |
| Hin1II | CATG | 5 cut(s) | 239, 589, 805, 1085, 2009 |
| Hin6I | GCGC | 8 cut(s) | 244, 264, 605, 691, 737, 1123, 1925, 2058 |
| HinP1I | GCGC | 8 cut(s) | 244, 264, 605, 691, 737, 1123, 1925, 2058 |
| HincII | GTYRAC | 4 cut(s) | 346, 715, 1130, 1365 |
| HindII | GTYRAC | 4 cut(s) | 346, 715, 1130, 1365 |
| HindIII | AAGCTT | 2 cut(s) | 450, 1917 |
| HphI | GGTGA | 8 cut(s) | 430, 719, 973, 1159, 1307, 1307, 1684, 1763 |
| Hpy166II | GTNNAC | 7 cut(s) | 346, 484, 682, 715, 1130, 1365, 2070 |
| Hpy188I | TCNGA | 6 cut(s) | 46, 881, 957, 1061, 2086, 2170 |
| Hpy188III | TCNNGA | 6 cut(s) | 39, 191, 751, 1027, 1038, 1495 |
| Hpy8I | GTNNAC | 7 cut(s) | 346, 484, 682, 715, 1130, 1365, 2070 |
| Hpy99I | CGWCG | 9 cut(s) | 11, 187, 439, 850, 1033, 1295, 1412, 1538, 2237 |
| HpyCH4III | ACNGT | 5 cut(s) | 370, 439, 649, 1295, 2137 |
| HpyCH4IV | ACGT | 8 cut(s) | 9, 684, 848, 907, 1407, 1533, 1593, 2235 |
| HpyCH4V | TGCA | 8 cut(s) | 107, 235, 484, 535, 795, 1888, 1936, 2133 |
| HpyF3I | CTNAG | 6 cut(s) | 719, 758, 1472, 1773, 1867, 2085 |
| HpySE526I | ACGT | 8 cut(s) | 9, 684, 848, 907, 1407, 1533, 1593, 2235 |
| Hsp92I | GRCGYC | 6 cut(s) | 9, 264, 1442, 1533, 1925, 2072 |
| Hsp92II | CATG | 5 cut(s) | 239, 589, 805, 1085, 2009 |
| HspAI | GCGC | 8 cut(s) | 244, 264, 605, 691, 737, 1123, 1925, 2058 |
| KasI | GGCGCC | 2 cut(s) | 263, 1924 |
| Kpn2I | TCCGGA | 2 cut(s) | 38, 190 |
| KroI | GCCGGC | 1 cut(s) | 463 |
| KroNI | GCCGGC | 1 cut(s) | 465 |
| KspI | CCGCGG | 1 cut(s) | 480 |
| Kzo9I | GATC | 6 cut(s) | 41, 175, 747, 1107, 1698, 1734 |
| LguI | GCTCTTC | 1 cut(s) | 2171 |
| LweI | GCATC | 7 cut(s) | 196, 567, 942, 1555, 1564, 1872, 2203 |
| MaeI | CTAG | 4 cut(s) | 131, 248, 1526, 2148 |
| MaeII | ACGT | 8 cut(s) | 9, 684, 848, 907, 1407, 1533, 1593, 2235 |
| MaeIII | GTNAC | 4 cut(s) | 508, 725, 1165, 1672 |
| MalI | GATC | 6 cut(s) | 43, 177, 749, 1109, 1700, 1736 |
| MbiI | CCGCTC | 7 cut(s) | 884, 1251, 1465, 1606, 1627, 1973, 2022 |
| MboI | GATC | 6 cut(s) | 41, 175, 747, 1107, 1698, 1734 |
| MboII | GAAGA | 6 cut(s) | 176, 926, 1160, 1201, 1490, 2188 |
| MflI | RGATCY | 3 cut(s) | 41, 1107, 1698 |
| MhlI | GDGCHC | 6 cut(s) | 486, 581, 1177, 1407, 1422, 2020 |
| MlsI | TGGCCA | 2 cut(s) | 1598, 2004 |
| MluCI | AATT | 3 cut(s) | 73, 855, 2045 |
| MluNI | TGGCCA | 2 cut(s) | 1598, 2004 |
| Mly113I | GGCGCC | 2 cut(s) | 264, 1925 |
| MlyI | GAGTC | 4 cut(s) | 77, 320, 758, 1130 |
| MmeI | TCCRAC | 2 cut(s) | 926, 1470 |
| Mox20I | TGGCCA | 2 cut(s) | 1598, 2004 |
| MroI | TCCGGA | 2 cut(s) | 38, 190 |
| MroNI | GCCGGC | 1 cut(s) | 463 |
| MscI | TGGCCA | 2 cut(s) | 1598, 2004 |
| MseI | TTAA | 1 cut(s) | 858 |
| MslI | CAYNNNNRTG | 2 cut(s) | 521, 800 |
| Msp20I | TGGCCA | 2 cut(s) | 1598, 2004 |
| MspA1I | CMGCKG | 9 cut(s) | 221, 270, 278, 479, 1223, 1238, 1708, 1799, 2208 |
| MvnI | CGCG | 5 cut(s) | 479, 1028, 1179, 1679, 2060 |
| NaeI | GCCGGC | 1 cut(s) | 465 |
| NarI | GGCGCC | 2 cut(s) | 264, 1925 |
| NciI | CCSGG | 5 cut(s) | 985, 1171, 1670, 2122, 2123 |
| NcoI | CCATGG | 1 cut(s) | 801 |
| NdeII | GATC | 6 cut(s) | 41, 175, 747, 1107, 1698, 1734 |
| NgoMIV | GCCGGC | 1 cut(s) | 463 |
| NheI | GCTAGC | 1 cut(s) | 1525 |
| NlaIII | CATG | 5 cut(s) | 239, 589, 805, 1085, 2009 |
| NmeAIII | GCCGAG | 1 cut(s) | 1303 |
| NmuCI | GTSAC | 4 cut(s) | 508, 725, 1165, 1672 |
| NruI | TCGCGA | 1 cut(s) | 1028 |
| NspI | RCATGY | 1 cut(s) | 589 |
| OliI | CACNNNNGTG | 1 cut(s) | 521 |
| PciI | ACATGT | 1 cut(s) | 585 |
| PciSI | GCTCTTC | 1 cut(s) | 2171 |
| PdiI | GCCGGC | 1 cut(s) | 465 |
| PfeI | GAWTC | 6 cut(s) | 35, 952, 1259, 1379, 1712, 1805 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 159, 588, 1456, 1908 |
| PleI | GAGTC | 4 cut(s) | 77, 319, 758, 1130 |
| PluTI | GGCGCC | 2 cut(s) | 267, 1928 |
| PmaCI | CACGTG | 1 cut(s) | 908 |
| PmlI | CACGTG | 1 cut(s) | 908 |
| PpsI | GAGTC | 4 cut(s) | 77, 319, 758, 1130 |
| Ppu21I | YACGTR | 2 cut(s) | 685, 908 |
| PscI | ACATGT | 1 cut(s) | 585 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1370 |
| PspCI | CACGTG | 1 cut(s) | 908 |
| PspEI | GGTNACC | 2 cut(s) | 1165, 1672 |
| PspFI | CCCAGC | 1 cut(s) | 410 |
| PspOMI | GGGCCC | 1 cut(s) | 1173 |
| PspPI | GGNCC | 9 cut(s) | 469, 641, 1050, 1173, 1174, 1489, 1513, 1666, 2113 |
| PstI | CTGCAG | 2 cut(s) | 537, 1890 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1456 |
| PsuI | RGATCY | 3 cut(s) | 41, 1107, 1698 |
| RruI | TCGCGA | 1 cut(s) | 1028 |
| RsaI | GTAC | 5 cut(s) | 660, 683, 776, 1829, 1969 |
| RsaNI | GTAC | 5 cut(s) | 659, 682, 775, 1828, 1968 |
| RseI | CAYNNNNRTG | 2 cut(s) | 521, 800 |
| SacII | CCGCGG | 1 cut(s) | 480 |
| SalI | GTCGAC | 1 cut(s) | 1363 |
| SapI | GCTCTTC | 1 cut(s) | 2171 |
| SaqAI | TTAA | 1 cut(s) | 858 |
| Sau3AI | GATC | 6 cut(s) | 41, 175, 747, 1107, 1698, 1734 |
| Sau96I | GGNCC | 9 cut(s) | 469, 641, 1050, 1173, 1174, 1489, 1513, 1666, 2113 |
| SchI | GAGTC | 4 cut(s) | 77, 320, 758, 1130 |
| SduI | GDGCHC | 6 cut(s) | 486, 581, 1177, 1407, 1422, 2020 |
| SfaNI | GCATC | 7 cut(s) | 196, 567, 942, 1555, 1564, 1872, 2203 |
| SfcI | CTRYAG | 4 cut(s) | 146, 533, 1233, 1886 |
| SfoI | GGCGCC | 2 cut(s) | 265, 1926 |
| Sfr303I | CCGCGG | 1 cut(s) | 480 |
| SgrBI | CCGCGG | 1 cut(s) | 480 |
| SinI | GGWCC | 3 cut(s) | 641, 1050, 1666 |
| SmaI | CCCGGG | 1 cut(s) | 2123 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 521, 800 |
| Sse9I | AATT | 3 cut(s) | 73, 855, 2045 |
| SspDI | GGCGCC | 2 cut(s) | 263, 1924 |
| SspI | AATATT | 1 cut(s) | 495 |
| SspMI | CTAG | 4 cut(s) | 131, 248, 1526, 2148 |
| StyI | CCWWGG | 3 cut(s) | 801, 1635, 1944 |
| TaaI | ACNGT | 5 cut(s) | 370, 439, 649, 1295, 2137 |
| TaiI | ACGT | 8 cut(s) | 12, 687, 851, 910, 1410, 1536, 1596, 2238 |
| TaqI | TCGA | 8 cut(s) | 23, 138, 750, 767, 863, 1364, 1536, 1905 |
| TaqII | GACCGA | 2 cut(s) | 658, 1350 |
| TasI | AATT | 3 cut(s) | 73, 855, 2045 |
| TatI | WGTACW | 1 cut(s) | 1827 |
| TfiI | GAWTC | 6 cut(s) | 35, 952, 1259, 1379, 1712, 1805 |
| Tru1I | TTAA | 1 cut(s) | 858 |
| Tru9I | TTAA | 1 cut(s) | 858 |
| TscAI | CASTG | 7 cut(s) | 34, 123, 1147, 1845, 1984, 2072, 2104 |
| TseFI | GTSAC | 4 cut(s) | 508, 725, 1165, 1672 |
| Tsp45I | GTSAC | 4 cut(s) | 508, 725, 1165, 1672 |
| TspDTI | ATGAA | 1 cut(s) | 1251 |
| TspGWI | ACGGA | 3 cut(s) | 84, 147, 962 |
| TspMI | CCCGGG | 1 cut(s) | 2121 |
| TspRI | CASTG | 7 cut(s) | 34, 123, 1147, 1845, 1984, 2072, 2104 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 159, 588, 1456, 1908 |
| VneI | GTGCAC | 1 cut(s) | 482 |
| VpaK11BI | GGWCC | 3 cut(s) | 641, 1050, 1666 |
| XapI | RAATTY | 2 cut(s) | 73, 2045 |
| XceI | RCATGY | 1 cut(s) | 589 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1098, 1453 |
| XmaI | CCCGGG | 1 cut(s) | 2121 |
| XmiI | GTMKAC | 1 cut(s) | 1364 |
| XspI | CTAG | 4 cut(s) | 131, 248, 1526, 2148 |
| ZraI | GACGTC | 2 cut(s) | 10, 1534 |