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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 625 |
| AccB1I | GGYRCC | 1 cut(s) | 505 |
| AccBSI | CCGCTC | 1 cut(s) | 695 |
| AccII | CGCG | 2 cut(s) | 357, 753 |
| AcoI | YGGCCR | 2 cut(s) | 168, 246 |
| AcuI | CTGAAG | 1 cut(s) | 366 |
| AcyI | GRCGYC | 3 cut(s) | 14, 471, 491 |
| AfaI | GTAC | 1 cut(s) | 559 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 124, 177, 235, 280, 502, 655 |
| AgsI | TTSAA | 3 cut(s) | 377, 385, 578 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 717 |
| AjiI | CACGTC | 1 cut(s) | 184 |
| AjnI | CCWGG | 4 cut(s) | 6, 27, 293, 675 |
| AluBI | AGCT | 6 cut(s) | 37, 160, 211, 344, 533, 788 |
| AluI | AGCT | 6 cut(s) | 37, 160, 211, 344, 533, 788 |
| Alw21I | GWGCWC | 1 cut(s) | 586 |
| Alw26I | GTCTC | 2 cut(s) | 208, 704 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 28 |
| Ama87I | CYCGRG | 3 cut(s) | 589, 690, 729 |
| AoxI | GGCC | 4 cut(s) | 168, 246, 561, 681 |
| ApeKI | GCWGC | 4 cut(s) | 22, 160, 277, 422 |
| AspLEI | GCGC | 2 cut(s) | 359, 755 |
| AspS9I | GGNCC | 4 cut(s) | 352, 435, 562, 682 |
| AsuHPI | GGTGA | 4 cut(s) | 319, 335, 496, 635 |
| AvaI | CYCGRG | 3 cut(s) | 589, 690, 729 |
| AvaII | GGWCC | 2 cut(s) | 352, 435 |
| BalI | TGGCCA | 1 cut(s) | 170 |
| BanI | GGYRCC | 1 cut(s) | 505 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 550, 582 |
| Bbv12I | GWGCWC | 1 cut(s) | 586 |
| BbvI | GCAGC | 4 cut(s) | 34, 147, 289, 434 |
| BccI | CCATC | 1 cut(s) | 692 |
| BceAI | ACGGC | 1 cut(s) | 576 |
| BciT130I | CCWGG | 4 cut(s) | 8, 29, 295, 677 |
| BciVI | GTATCC | 1 cut(s) | 124 |
| BcoDI | GTCTC | 2 cut(s) | 208, 704 |
| BfaI | CTAG | 1 cut(s) | 440 |
| BfmI | CTRYAG | 2 cut(s) | 141, 275 |
| BfuAI | ACCTGC | 1 cut(s) | 625 |
| BfuI | GTATCC | 1 cut(s) | 124 |
| Bme1390I | CCNGG | 4 cut(s) | 8, 29, 295, 677 |
| Bme18I | GGWCC | 2 cut(s) | 352, 435 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 717 |
| BmeT110I | CYCGRG | 3 cut(s) | 589, 690, 729 |
| BmgBI | CACGTC | 1 cut(s) | 184 |
| BmgT120I | GGNCC | 4 cut(s) | 352, 435, 562, 682 |
| BmiI | GGNNCC | 5 cut(s) | 353, 436, 437, 507, 564 |
| BmrFI | CCNGG | 4 cut(s) | 8, 29, 295, 677 |
| BmrI | ACTGGG | 2 cut(s) | 490, 643 |
| BmsI | GCATC | 3 cut(s) | 127, 136, 444 |
| BmuI | ACTGGG | 2 cut(s) | 490, 643 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 593, 625, 595, 627 |
| BpmI | CTGGAG | 2 cut(s) | 233, 254 |
| BpuEI | CTTGAG | 1 cut(s) | 86 |
| Bsa29I | ATCGAT | 1 cut(s) | 267 |
| BsaBI | GATNNNNATC | 1 cut(s) | 269 |
| BsaHI | GRCGYC | 3 cut(s) | 14, 471, 491 |
| BsaJI | CCNNGG | 4 cut(s) | 27, 252, 501, 730 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 188, 218 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 124, 177, 235, 280, 502, 655 |
| Bse118I | RCCGGY | 1 cut(s) | 547 |
| Bse1I | ACTGG | 3 cut(s) | 321, 485, 649 |
| Bse8I | GATNNNNATC | 1 cut(s) | 269 |
| BseBI | CCWGG | 4 cut(s) | 8, 29, 295, 677 |
| BseCI | ATCGAT | 1 cut(s) | 267 |
| BseDI | CCNNGG | 4 cut(s) | 27, 252, 501, 730 |
| BseGI | GGATG | 2 cut(s) | 703, 757 |
| BseJI | GATNNNNATC | 1 cut(s) | 269 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 124, 177, 235, 280, 502, 655 |
| BseMII | CTCAG | 3 cut(s) | 58, 329, 530 |
| BseNI | ACTGG | 3 cut(s) | 321, 485, 649 |
| BseRI | GAGGAG | 3 cut(s) | 65, 317, 630 |
| BseXI | GCAGC | 4 cut(s) | 34, 147, 289, 434 |
| BseYI | CCCAGC | 4 cut(s) | 431, 495, 525, 630 |
| Bsh1236I | CGCG | 2 cut(s) | 357, 753 |
| BshFI | GGCC | 4 cut(s) | 170, 248, 563, 683 |
| BshNI | GGYRCC | 1 cut(s) | 505 |
| BshVI | ATCGAT | 1 cut(s) | 267 |
| BsiHKAI | GWGCWC | 1 cut(s) | 586 |
| BsiHKCI | CYCGRG | 3 cut(s) | 589, 690, 729 |
| BsiSI | CCGG | 1 cut(s) | 548 |
| BslFI | GGGAC | 7 cut(s) | 194, 211, 365, 448, 478, 527, 646 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 124, 177, 235, 280, 502, 655 |
| BsmAI | GTCTC | 2 cut(s) | 208, 704 |
| BsmFI | GGGAC | 7 cut(s) | 194, 211, 365, 448, 478, 527, 646 |
| BsmI | GAATGC | 2 cut(s) | 380, 412 |
| BsnI | GGCC | 4 cut(s) | 170, 248, 563, 683 |
| BsoBI | CYCGRG | 3 cut(s) | 589, 690, 729 |
| Bsp1286I | GDGCHC | 1 cut(s) | 586 |
| Bsp143I | GATC | 1 cut(s) | 264 |
| BspANI | GGCC | 4 cut(s) | 170, 248, 563, 683 |
| BspCNI | CTCAG | 3 cut(s) | 57, 330, 529 |
| BspDI | ATCGAT | 1 cut(s) | 267 |
| BspFNI | CGCG | 2 cut(s) | 357, 753 |
| BspLI | GGNNCC | 5 cut(s) | 353, 436, 437, 507, 564 |
| BspMAI | CTGCAG | 1 cut(s) | 279 |
| BspMI | ACCTGC | 1 cut(s) | 625 |
| BspT107I | GGYRCC | 1 cut(s) | 505 |
| BsrBI | CCGCTC | 1 cut(s) | 695 |
| BsrFI | RCCGGY | 1 cut(s) | 547 |
| BsrI | ACTGG | 3 cut(s) | 321, 485, 649 |
| BssAI | RCCGGY | 1 cut(s) | 547 |
| BssECI | CCNNGG | 4 cut(s) | 27, 252, 501, 730 |
| BssMI | GATC | 1 cut(s) | 264 |
| BssNI | GRCGYC | 3 cut(s) | 14, 471, 491 |
| BssT1I | CCWWGG | 2 cut(s) | 252, 501 |
| Bst2UI | CCWGG | 4 cut(s) | 8, 29, 295, 677 |
| Bst4CI | ACNGT | 1 cut(s) | 390 |
| Bst6I | CTCTTC | 1 cut(s) | 548 |
| BstACI | GRCGYC | 3 cut(s) | 14, 471, 491 |
| BstC8I | GCNNGC | 6 cut(s) | 158, 334, 531, 549, 586, 771 |
| BstDEI | CTNAG | 5 cut(s) | 18, 44, 338, 516, 534 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 122, 233 |
| BstF5I | GGATG | 2 cut(s) | 703, 757 |
| BstFNI | CGCG | 2 cut(s) | 357, 753 |
| BstHHI | GCGC | 2 cut(s) | 359, 755 |
| BstKTI | GATC | 1 cut(s) | 267 |
| BstMAI | GTCTC | 2 cut(s) | 208, 704 |
| BstMBI | GATC | 1 cut(s) | 264 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 146, 365, 368, 377, 428, 505, 517, 526 |
| BstNI | CCWGG | 4 cut(s) | 8, 29, 295, 677 |
| BstNSI | RCATGY | 1 cut(s) | 226 |
| BstSCI | CCNGG | 4 cut(s) | 6, 27, 293, 675 |
| BstSFI | CTRYAG | 2 cut(s) | 141, 275 |
| BstUI | CGCG | 2 cut(s) | 357, 753 |
| BstV1I | GCAGC | 4 cut(s) | 34, 147, 289, 434 |
| Bsu15I | ATCGAT | 1 cut(s) | 267 |
| BsuI | GTATCC | 1 cut(s) | 124 |
| BsuRI | GGCC | 4 cut(s) | 170, 248, 563, 683 |
| BsuTUI | ATCGAT | 1 cut(s) | 267 |
| BtgZI | GCGATG | 1 cut(s) | 425 |
| BtrI | CACGTC | 1 cut(s) | 184 |
| BtsCI | GGATG | 2 cut(s) | 703, 757 |
| BveI | ACCTGC | 1 cut(s) | 625 |
| Cac8I | GCNNGC | 6 cut(s) | 158, 334, 531, 549, 586, 771 |
| CaiI | CAGNNNCTG | 1 cut(s) | 28 |
| CfoI | GCGC | 2 cut(s) | 359, 755 |
| Cfr10I | RCCGGY | 1 cut(s) | 547 |
| Cfr13I | GGNCC | 4 cut(s) | 352, 435, 562, 682 |
| ClaI | ATCGAT | 1 cut(s) | 267 |
| CseI | GACGC | 3 cut(s) | 3, 460, 480 |
| Csp6I | GTAC | 1 cut(s) | 558 |
| CviAII | CATG | 3 cut(s) | 152, 200, 223 |
| CviQI | GTAC | 1 cut(s) | 558 |
| DdeI | CTNAG | 5 cut(s) | 18, 44, 338, 516, 534 |
| DpnI | GATC | 1 cut(s) | 266 |
| DpnII | GATC | 1 cut(s) | 264 |
| DriI | GACNNNNNGTC | 1 cut(s) | 717 |
| EaeI | YGGCCR | 2 cut(s) | 168, 246 |
| Eam1104I | CTCTTC | 1 cut(s) | 548 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 717 |
| EarI | CTCTTC | 1 cut(s) | 548 |
| EciI | GGCGGA | 4 cut(s) | 95, 143, 410, 750 |
| Eco130I | CCWWGG | 2 cut(s) | 252, 501 |
| Eco32I | GATATC | 1 cut(s) | 271 |
| Eco47I | GGWCC | 2 cut(s) | 352, 435 |
| Eco57I | CTGAAG | 1 cut(s) | 366 |
| Eco88I | CYCGRG | 3 cut(s) | 589, 690, 729 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 122, 233 |
| EcoO109I | RGGNCCY | 1 cut(s) | 435 |
| EcoRII | CCWGG | 4 cut(s) | 6, 27, 293, 675 |
| EcoRV | GATATC | 1 cut(s) | 271 |
| EcoT14I | CCWWGG | 2 cut(s) | 252, 501 |
| ErhI | CCWWGG | 2 cut(s) | 252, 501 |
| FaeI | CATG | 3 cut(s) | 155, 203, 226 |
| FaiI | YATR | 3 cut(s) | 153, 201, 224 |
| FaqI | GGGAC | 7 cut(s) | 194, 211, 365, 448, 478, 527, 646 |
| FatI | CATG | 3 cut(s) | 151, 199, 222 |
| FauI | CCCGC | 5 cut(s) | 171, 273, 341, 552, 613 |
| FokI | GGATG | 2 cut(s) | 710, 744 |
| FspBI | CTAG | 1 cut(s) | 440 |
| GlaI | GCGC | 2 cut(s) | 358, 754 |
| GsaI | CCCAGC | 4 cut(s) | 435, 499, 529, 634 |
| GsuI | CTGGAG | 2 cut(s) | 233, 254 |
| HaeIII | GGCC | 4 cut(s) | 170, 248, 563, 683 |
| HapII | CCGG | 1 cut(s) | 548 |
| HgaI | GACGC | 3 cut(s) | 3, 460, 480 |
| HhaI | GCGC | 2 cut(s) | 359, 755 |
| Hin1I | GRCGYC | 3 cut(s) | 14, 471, 491 |
| Hin1II | CATG | 3 cut(s) | 155, 203, 226 |
| Hin6I | GCGC | 2 cut(s) | 357, 753 |
| HinP1I | GCGC | 2 cut(s) | 357, 753 |
| HinfI | GANTC | 6 cut(s) | 55, 284, 626, 637, 712, 718 |
| HpaII | CCGG | 1 cut(s) | 548 |
| HphI | GGTGA | 4 cut(s) | 319, 335, 496, 635 |
| Hpy188I | TCNGA | 3 cut(s) | 655, 717, 739 |
| Hpy188III | TCNNGA | 2 cut(s) | 65, 612 |
| HpyAV | CCTTC | 7 cut(s) | 314, 341, 421, 460, 481, 572, 576 |
| HpyCH4III | ACNGT | 1 cut(s) | 390 |
| HpyCH4IV | ACGT | 2 cut(s) | 183, 447 |
| HpyCH4V | TGCA | 3 cut(s) | 149, 163, 277 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 146, 365, 368, 377, 428, 505, 517, 526 |
| HpyF3I | CTNAG | 5 cut(s) | 18, 44, 338, 516, 534 |
| HpySE526I | ACGT | 2 cut(s) | 183, 447 |
| Hsp92I | GRCGYC | 3 cut(s) | 14, 471, 491 |
| Hsp92II | CATG | 3 cut(s) | 155, 203, 226 |
| HspAI | GCGC | 2 cut(s) | 357, 753 |
| KflI | GGGWCCC | 1 cut(s) | 435 |
| KroI | GCCGGC | 1 cut(s) | 547 |
| KroNI | GCCGGC | 1 cut(s) | 549 |
| Kzo9I | GATC | 1 cut(s) | 264 |
| LmnI | GCTCC | 1 cut(s) | 214 |
| Lsp1109I | GCAGC | 4 cut(s) | 34, 147, 289, 434 |
| LweI | GCATC | 3 cut(s) | 127, 136, 444 |
| MaeI | CTAG | 1 cut(s) | 440 |
| MaeII | ACGT | 2 cut(s) | 183, 447 |
| MaeIII | GTNAC | 1 cut(s) | 623 |
| MalI | GATC | 1 cut(s) | 266 |
| MbiI | CCGCTC | 1 cut(s) | 695 |
| MboI | GATC | 1 cut(s) | 264 |
| MboII | GAAGA | 3 cut(s) | 322, 565, 794 |
| MhlI | GDGCHC | 1 cut(s) | 586 |
| MlsI | TGGCCA | 1 cut(s) | 170 |
| MluCI | AATT | 1 cut(s) | 95 |
| MluNI | TGGCCA | 1 cut(s) | 170 |
| MlyI | GAGTC | 5 cut(s) | 293, 620, 631, 706, 727 |
| MmeI | TCCRAC | 2 cut(s) | 81, 746 |
| Mox20I | TGGCCA | 1 cut(s) | 170 |
| MreI | CGCCGGCG | 1 cut(s) | 547 |
| MroNI | GCCGGC | 1 cut(s) | 547 |
| MscI | TGGCCA | 1 cut(s) | 170 |
| Msp20I | TGGCCA | 1 cut(s) | 170 |
| MspA1I | CMGCKG | 4 cut(s) | 178, 280, 371, 634 |
| MspI | CCGG | 1 cut(s) | 548 |
| MspR9I | CCNGG | 4 cut(s) | 8, 29, 295, 677 |
| Mva1269I | GAATGC | 2 cut(s) | 380, 412 |
| MvaI | CCWGG | 4 cut(s) | 8, 29, 295, 677 |
| MvnI | CGCG | 2 cut(s) | 357, 753 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 146, 365, 368, 377, 428, 505, 517, 526 |
| NaeI | GCCGGC | 1 cut(s) | 549 |
| NdeII | GATC | 1 cut(s) | 264 |
| NgoMIV | GCCGGC | 1 cut(s) | 547 |
| NlaIII | CATG | 3 cut(s) | 155, 203, 226 |
| NlaIV | GGNNCC | 5 cut(s) | 353, 436, 437, 507, 564 |
| NmuCI | GTSAC | 1 cut(s) | 623 |
| NspI | RCATGY | 1 cut(s) | 226 |
| PaeR7I | CTCGAG | 1 cut(s) | 690 |
| PctI | GAATGC | 2 cut(s) | 380, 412 |
| PdiI | GCCGGC | 1 cut(s) | 549 |
| PfeI | GAWTC | 1 cut(s) | 55 |
| PflFI | GACNNNGTC | 1 cut(s) | 200 |
| PleI | GAGTC | 5 cut(s) | 292, 620, 631, 706, 726 |
| PpsI | GAGTC | 5 cut(s) | 292, 620, 631, 706, 726 |
| PpuMI | RGGWCCY | 1 cut(s) | 435 |
| Psp5II | RGGWCCY | 1 cut(s) | 435 |
| Psp6I | CCWGG | 4 cut(s) | 6, 27, 293, 675 |
| PspFI | CCCAGC | 4 cut(s) | 431, 495, 525, 630 |
| PspGI | CCWGG | 4 cut(s) | 6, 27, 293, 675 |
| PspN4I | GGNNCC | 5 cut(s) | 353, 436, 437, 507, 564 |
| PspPI | GGNCC | 4 cut(s) | 352, 435, 562, 682 |
| PspPPI | RGGWCCY | 1 cut(s) | 435 |
| PspXI | VCTCGAGB | 1 cut(s) | 690 |
| PstI | CTGCAG | 1 cut(s) | 279 |
| PstNI | CAGNNNCTG | 1 cut(s) | 28 |
| PsyI | GACNNNGTC | 1 cut(s) | 200 |
| RsaI | GTAC | 1 cut(s) | 559 |
| RsaNI | GTAC | 1 cut(s) | 558 |
| Sau3AI | GATC | 1 cut(s) | 264 |
| Sau96I | GGNCC | 4 cut(s) | 352, 435, 562, 682 |
| SchI | GAGTC | 5 cut(s) | 293, 620, 631, 706, 727 |
| ScrFI | CCNGG | 4 cut(s) | 8, 29, 295, 677 |
| SduI | GDGCHC | 1 cut(s) | 586 |
| SfaNI | GCATC | 3 cut(s) | 127, 136, 444 |
| SfcI | CTRYAG | 2 cut(s) | 141, 275 |
| Sfr274I | CTCGAG | 1 cut(s) | 690 |
| SgrAI | CRCCGGYG | 1 cut(s) | 547 |
| SinI | GGWCC | 2 cut(s) | 352, 435 |
| SlaI | CTCGAG | 1 cut(s) | 690 |
| SmlI | CTYRAG | 2 cut(s) | 65, 690 |
| SmoI | CTYRAG | 2 cut(s) | 65, 690 |
| Sse9I | AATT | 1 cut(s) | 95 |
| SspMI | CTAG | 1 cut(s) | 440 |
| StyD4I | CCNGG | 4 cut(s) | 6, 27, 293, 675 |
| StyI | CCWWGG | 2 cut(s) | 252, 501 |
| TaaI | ACNGT | 1 cut(s) | 390 |
| TaiI | ACGT | 2 cut(s) | 186, 450 |
| TaqI | TCGA | 3 cut(s) | 267, 613, 691 |
| TasI | AATT | 1 cut(s) | 95 |
| TfiI | GAWTC | 1 cut(s) | 55 |
| TseFI | GTSAC | 1 cut(s) | 623 |
| TseI | GCWGC | 4 cut(s) | 22, 160, 277, 422 |
| Tsp45I | GTSAC | 1 cut(s) | 623 |
| TspDTI | ATGAA | 1 cut(s) | 428 |
| Tth111I | GACNNNGTC | 1 cut(s) | 200 |
| VpaK11BI | GGWCC | 2 cut(s) | 352, 435 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 122, 233 |
| XceI | RCATGY | 1 cut(s) | 226 |
| XhoI | CTCGAG | 1 cut(s) | 690 |
| XspI | CTAG | 1 cut(s) | 440 |