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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 672 |
| AccI | GTMKAC | 1 cut(s) | 408 |
| AccII | CGCG | 3 cut(s) | 10, 803, 873 |
| AccIII | TCCGGA | 1 cut(s) | 151 |
| AclWI | GGATC | 3 cut(s) | 143, 156, 629 |
| AcoI | YGGCCR | 2 cut(s) | 423, 863 |
| AcsI | RAATTY | 1 cut(s) | 548 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 288, 481, 559, 820, 872 |
| AgsI | TTSAA | 2 cut(s) | 64, 644 |
| AjiI | CACGTC | 1 cut(s) | 412 |
| AjnI | CCWGG | 1 cut(s) | 723 |
| AluBI | AGCT | 7 cut(s) | 47, 660, 739, 772, 792, 855, 885 |
| AluI | AGCT | 7 cut(s) | 47, 660, 739, 772, 792, 855, 885 |
| Alw21I | GWGCWC | 1 cut(s) | 887 |
| Alw26I | GTCTC | 5 cut(s) | 149, 173, 274, 764, 773 |
| AlwI | GGATC | 3 cut(s) | 143, 156, 629 |
| Ama87I | CYCGRG | 1 cut(s) | 845 |
| Aor13HI | TCCGGA | 1 cut(s) | 151 |
| AoxI | GGCC | 6 cut(s) | 129, 220, 423, 471, 500, 863 |
| ApeKI | GCWGC | 4 cut(s) | 275, 286, 494, 736 |
| ApoI | RAATTY | 1 cut(s) | 548 |
| AspLEI | GCGC | 2 cut(s) | 12, 873 |
| AspS9I | GGNCC | 6 cut(s) | 76, 130, 221, 445, 472, 500 |
| AsuC2I | CCSGG | 2 cut(s) | 36, 404 |
| AsuHPI | GGTGA | 3 cut(s) | 178, 520, 530 |
| AsuNHI | GCTAGC | 1 cut(s) | 301 |
| AvaI | CYCGRG | 1 cut(s) | 845 |
| AvaII | GGWCC | 2 cut(s) | 76, 445 |
| BaeGI | GKGCMC | 1 cut(s) | 675 |
| BamHI | GGATCC | 1 cut(s) | 148 |
| BanI | GGYRCC | 1 cut(s) | 672 |
| BanII | GRGCYC | 1 cut(s) | 887 |
| Bbv12I | GWGCWC | 1 cut(s) | 887 |
| BbvI | GCAGC | 4 cut(s) | 262, 298, 481, 748 |
| BccI | CCATC | 1 cut(s) | 745 |
| BceAI | ACGGC | 2 cut(s) | 244, 850 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 515, 549 |
| BciT130I | CCWGG | 1 cut(s) | 725 |
| BciVI | GTATCC | 1 cut(s) | 427 |
| BcnI | CCSGG | 2 cut(s) | 36, 404 |
| BcoDI | GTCTC | 5 cut(s) | 149, 173, 274, 764, 773 |
| BfaI | CTAG | 6 cut(s) | 48, 120, 302, 309, 783, 879 |
| BfmI | CTRYAG | 1 cut(s) | 655 |
| BfuI | GTATCC | 1 cut(s) | 427 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 228 |
| BisI | GCNGC | 9 cut(s) | 203, 276, 287, 354, 389, 423, 495, 537, 737 |
| BlpI | GCTNAGC | 1 cut(s) | 661 |
| BlsI | GCNGC | 9 cut(s) | 204, 277, 288, 355, 390, 424, 496, 538, 738 |
| Bme1390I | CCNGG | 3 cut(s) | 36, 404, 725 |
| Bme18I | GGWCC | 2 cut(s) | 76, 445 |
| BmeT110I | CYCGRG | 1 cut(s) | 845 |
| BmgBI | CACGTC | 1 cut(s) | 412 |
| BmgT120I | GGNCC | 6 cut(s) | 76, 130, 221, 445, 472, 500 |
| BmiI | GGNNCC | 6 cut(s) | 150, 253, 446, 474, 674, 812 |
| BmrFI | CCNGG | 3 cut(s) | 36, 404, 725 |
| BmsI | GCATC | 4 cut(s) | 189, 288, 823, 831 |
| BmtI | GCTAGC | 1 cut(s) | 305 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 839, 871 |
| BpmI | CTGGAG | 3 cut(s) | 122, 635, 746 |
| Bpu10I | CCTNAGC | 1 cut(s) | 740 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 661 |
| BpuMI | CCSGG | 2 cut(s) | 36, 404 |
| BsaI | GGTCTC | 1 cut(s) | 764 |
| BsaJI | CCNNGG | 5 cut(s) | 217, 237, 439, 723, 819 |
| BsaWI | WCCGGW | 1 cut(s) | 151 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 95, 125, 551, 581 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 288, 481, 559, 820, 872 |
| Bse1I | ACTGG | 2 cut(s) | 172, 451 |
| BseAI | TCCGGA | 1 cut(s) | 151 |
| BseBI | CCWGG | 1 cut(s) | 725 |
| BseDI | CCNNGG | 5 cut(s) | 217, 237, 439, 723, 819 |
| BseGI | GGATG | 3 cut(s) | 303, 421, 650 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 288, 481, 559, 820, 872 |
| BseMII | CTCAG | 4 cut(s) | 75, 555, 675, 754 |
| BseNI | ACTGG | 2 cut(s) | 172, 451 |
| BseRI | GAGGAG | 2 cut(s) | 761, 823 |
| BseSI | GKGCMC | 1 cut(s) | 675 |
| BseX3I | CGGCCG | 1 cut(s) | 423 |
| BseXI | GCAGC | 4 cut(s) | 262, 298, 481, 748 |
| BseYI | CCCAGC | 1 cut(s) | 497 |
| BsgI | GTGCAG | 2 cut(s) | 261, 305 |
| Bsh1236I | CGCG | 3 cut(s) | 10, 803, 873 |
| Bsh1285I | CGRYCG | 2 cut(s) | 408, 426 |
| BshFI | GGCC | 6 cut(s) | 131, 222, 425, 473, 502, 865 |
| BshNI | GGYRCC | 1 cut(s) | 672 |
| BsiEI | CGRYCG | 2 cut(s) | 408, 426 |
| BsiHKAI | GWGCWC | 1 cut(s) | 887 |
| BsiHKCI | CYCGRG | 1 cut(s) | 845 |
| BsiSI | CCGG | 4 cut(s) | 35, 152, 404, 503 |
| BslFI | GGGAC | 2 cut(s) | 800, 889 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 288, 481, 559, 820, 872 |
| BsmAI | GTCTC | 5 cut(s) | 149, 173, 274, 764, 773 |
| BsmFI | GGGAC | 2 cut(s) | 800, 889 |
| BsnI | GGCC | 6 cut(s) | 131, 222, 425, 473, 502, 865 |
| Bso31I | GGTCTC | 1 cut(s) | 764 |
| BsoBI | CYCGRG | 1 cut(s) | 845 |
| Bsp1286I | GDGCHC | 2 cut(s) | 675, 887 |
| Bsp13I | TCCGGA | 1 cut(s) | 151 |
| Bsp143I | GATC | 3 cut(s) | 87, 148, 621 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 661 |
| BspANI | GGCC | 6 cut(s) | 131, 222, 425, 473, 502, 865 |
| BspCNI | CTCAG | 4 cut(s) | 76, 556, 674, 753 |
| BspEI | TCCGGA | 1 cut(s) | 151 |
| BspFNI | CGCG | 3 cut(s) | 10, 803, 873 |
| BspLI | GGNNCC | 6 cut(s) | 150, 253, 446, 474, 674, 812 |
| BspOI | GCTAGC | 1 cut(s) | 305 |
| BspPI | GGATC | 3 cut(s) | 143, 156, 629 |
| BspT107I | GGYRCC | 1 cut(s) | 672 |
| BspTNI | GGTCTC | 1 cut(s) | 764 |
| BsrI | ACTGG | 2 cut(s) | 172, 451 |
| BssECI | CCNNGG | 5 cut(s) | 217, 237, 439, 723, 819 |
| BssMI | GATC | 3 cut(s) | 87, 148, 621 |
| BssT1I | CCWWGG | 2 cut(s) | 439, 819 |
| Bst2UI | CCWGG | 1 cut(s) | 725 |
| Bst4CI | ACNGT | 6 cut(s) | 80, 142, 369, 490, 597, 648 |
| BstC8I | GCNNGC | 7 cut(s) | 233, 246, 303, 471, 611, 774, 853 |
| BstDEI | CTNAG | 4 cut(s) | 84, 564, 661, 740 |
| BstDSI | CCRYGG | 1 cut(s) | 237 |
| BstEII | GGTNACC | 1 cut(s) | 518 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 557, 818 |
| BstF5I | GGATG | 3 cut(s) | 303, 421, 650 |
| BstFNI | CGCG | 3 cut(s) | 10, 803, 873 |
| BstHHI | GCGC | 2 cut(s) | 12, 873 |
| BstKTI | GATC | 3 cut(s) | 90, 151, 624 |
| BstMAI | GTCTC | 5 cut(s) | 149, 173, 274, 764, 773 |
| BstMBI | GATC | 3 cut(s) | 87, 148, 621 |
| BstMCI | CGRYCG | 2 cut(s) | 408, 426 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 199, 228, 241, 319, 385, 470, 491, 542 |
| BstNI | CCWGG | 1 cut(s) | 725 |
| BstNSI | RCATGY | 1 cut(s) | 112 |
| BstPI | GGTNACC | 1 cut(s) | 518 |
| BstSCI | CCNGG | 3 cut(s) | 34, 402, 723 |
| BstSFI | CTRYAG | 1 cut(s) | 655 |
| BstSLI | GKGCMC | 1 cut(s) | 675 |
| BstUI | CGCG | 3 cut(s) | 10, 803, 873 |
| BstV1I | GCAGC | 4 cut(s) | 262, 298, 481, 748 |
| BstX2I | RGATCY | 1 cut(s) | 148 |
| BstYI | RGATCY | 1 cut(s) | 148 |
| BstZI | CGGCCG | 1 cut(s) | 423 |
| BsuI | GTATCC | 1 cut(s) | 427 |
| BsuRI | GGCC | 6 cut(s) | 131, 222, 425, 473, 502, 865 |
| BtgI | CCRYGG | 1 cut(s) | 237 |
| BtrI | CACGTC | 1 cut(s) | 412 |
| BtsCI | GGATG | 3 cut(s) | 303, 421, 650 |
| BtsIMutI | CAGTG | 1 cut(s) | 458 |
| Cac8I | GCNNGC | 7 cut(s) | 233, 246, 303, 471, 611, 774, 853 |
| CfoI | GCGC | 2 cut(s) | 12, 873 |
| Cfr13I | GGNCC | 6 cut(s) | 76, 130, 221, 445, 472, 500 |
| CseI | GACGC | 2 cut(s) | 16, 809 |
| CviAII | CATG | 3 cut(s) | 73, 109, 692 |
| DdeI | CTNAG | 4 cut(s) | 84, 564, 661, 740 |
| DpnI | GATC | 3 cut(s) | 89, 150, 623 |
| DpnII | GATC | 3 cut(s) | 87, 148, 621 |
| EaeI | YGGCCR | 2 cut(s) | 423, 863 |
| EagI | CGGCCG | 1 cut(s) | 423 |
| EciI | GGCGGA | 3 cut(s) | 21, 791, 812 |
| Ecl136II | GAGCTC | 1 cut(s) | 885 |
| EclXI | CGGCCG | 1 cut(s) | 423 |
| Eco130I | CCWWGG | 2 cut(s) | 439, 819 |
| Eco24I | GRGCYC | 1 cut(s) | 887 |
| Eco31I | GGTCTC | 1 cut(s) | 764 |
| Eco32I | GATATC | 1 cut(s) | 343 |
| Eco47I | GGWCC | 2 cut(s) | 76, 445 |
| Eco52I | CGGCCG | 1 cut(s) | 423 |
| Eco53kI | GAGCTC | 1 cut(s) | 885 |
| Eco88I | CYCGRG | 1 cut(s) | 845 |
| Eco91I | GGTNACC | 1 cut(s) | 518 |
| EcoICRI | GAGCTC | 1 cut(s) | 885 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 557, 818 |
| EcoO109I | RGGNCCY | 1 cut(s) | 472 |
| EcoO65I | GGTNACC | 1 cut(s) | 518 |
| EcoRI | GAATTC | 1 cut(s) | 548 |
| EcoRII | CCWGG | 1 cut(s) | 723 |
| EcoRV | GATATC | 1 cut(s) | 343 |
| EcoT14I | CCWWGG | 2 cut(s) | 439, 819 |
| EcoT38I | GRGCYC | 1 cut(s) | 887 |
| ErhI | CCWWGG | 2 cut(s) | 439, 819 |
| FaeI | CATG | 3 cut(s) | 76, 112, 695 |
| FaqI | GGGAC | 2 cut(s) | 800, 889 |
| FatI | CATG | 3 cut(s) | 72, 108, 691 |
| FauI | CCCGC | 5 cut(s) | 241, 282, 508, 602, 866 |
| FauNDI | CATATG | 1 cut(s) | 541 |
| FblI | GTMKAC | 1 cut(s) | 408 |
| Fnu4HI | GCNGC | 9 cut(s) | 203, 276, 287, 354, 389, 423, 495, 537, 737 |
| FokI | GGATG | 3 cut(s) | 310, 428, 637 |
| FriOI | GRGCYC | 1 cut(s) | 887 |
| Fsp4HI | GCNGC | 9 cut(s) | 203, 276, 287, 354, 389, 423, 495, 537, 737 |
| FspBI | CTAG | 6 cut(s) | 48, 120, 302, 309, 783, 879 |
| GlaI | GCGC | 2 cut(s) | 11, 872 |
| GluI | GCNGC | 9 cut(s) | 203, 276, 287, 354, 389, 423, 495, 537, 737 |
| GsaI | CCCAGC | 1 cut(s) | 501 |
| GsuI | CTGGAG | 3 cut(s) | 122, 635, 746 |
| HaeIII | GGCC | 6 cut(s) | 131, 222, 425, 473, 502, 865 |
| HapII | CCGG | 4 cut(s) | 35, 152, 404, 503 |
| HgaI | GACGC | 2 cut(s) | 16, 809 |
| HhaI | GCGC | 2 cut(s) | 12, 873 |
| Hin1II | CATG | 3 cut(s) | 76, 112, 695 |
| Hin6I | GCGC | 2 cut(s) | 10, 871 |
| HinP1I | GCGC | 2 cut(s) | 10, 871 |
| HincII | GTYRAC | 2 cut(s) | 6, 409 |
| HindII | GTYRAC | 2 cut(s) | 6, 409 |
| HinfI | GANTC | 2 cut(s) | 181, 527 |
| HpaII | CCGG | 4 cut(s) | 35, 152, 404, 503 |
| HphI | GGTGA | 3 cut(s) | 178, 520, 530 |
| Hpy166II | GTNNAC | 3 cut(s) | 6, 409, 448 |
| Hpy188I | TCNGA | 2 cut(s) | 178, 889 |
| Hpy188III | TCNNGA | 6 cut(s) | 53, 64, 101, 152, 553, 763 |
| Hpy8I | GTNNAC | 3 cut(s) | 6, 409, 448 |
| Hpy99I | CGWCG | 1 cut(s) | 413 |
| HpyAV | CCTTC | 2 cut(s) | 319, 475 |
| HpyCH4III | ACNGT | 6 cut(s) | 80, 142, 369, 490, 597, 648 |
| HpyCH4IV | ACGT | 1 cut(s) | 411 |
| HpyCH4V | TGCA | 3 cut(s) | 244, 278, 286 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 199, 228, 241, 319, 385, 470, 491, 542 |
| HpyF3I | CTNAG | 4 cut(s) | 84, 564, 661, 740 |
| HpySE526I | ACGT | 1 cut(s) | 411 |
| Hsp92II | CATG | 3 cut(s) | 76, 112, 695 |
| HspAI | GCGC | 2 cut(s) | 10, 871 |
| Kpn2I | TCCGGA | 1 cut(s) | 151 |
| Kzo9I | GATC | 3 cut(s) | 87, 148, 621 |
| LmnI | GCTCC | 4 cut(s) | 251, 769, 810, 882 |
| Lsp1109I | GCAGC | 4 cut(s) | 262, 298, 481, 748 |
| LweI | GCATC | 4 cut(s) | 189, 288, 823, 831 |
| MaeI | CTAG | 6 cut(s) | 48, 120, 302, 309, 783, 879 |
| MaeII | ACGT | 1 cut(s) | 411 |
| MaeIII | GTNAC | 2 cut(s) | 361, 518 |
| MalI | GATC | 3 cut(s) | 89, 150, 623 |
| MboI | GATC | 3 cut(s) | 87, 148, 621 |
| MboII | GAAGA | 2 cut(s) | 469, 571 |
| MflI | RGATCY | 1 cut(s) | 148 |
| MhlI | GDGCHC | 2 cut(s) | 675, 887 |
| MluCI | AATT | 2 cut(s) | 94, 548 |
| MlyI | GAGTC | 2 cut(s) | 175, 521 |
| MroI | TCCGGA | 1 cut(s) | 151 |
| MspA1I | CMGCKG | 1 cut(s) | 289 |
| MspI | CCGG | 4 cut(s) | 35, 152, 404, 503 |
| MspR9I | CCNGG | 3 cut(s) | 36, 404, 725 |
| MvaI | CCWGG | 1 cut(s) | 725 |
| MvnI | CGCG | 3 cut(s) | 10, 803, 873 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 199, 228, 241, 319, 385, 470, 491, 542 |
| NciI | CCSGG | 2 cut(s) | 36, 404 |
| NdeI | CATATG | 1 cut(s) | 541 |
| NdeII | GATC | 3 cut(s) | 87, 148, 621 |
| NheI | GCTAGC | 1 cut(s) | 301 |
| NlaIII | CATG | 3 cut(s) | 76, 112, 695 |
| NlaIV | GGNNCC | 6 cut(s) | 150, 253, 446, 474, 674, 812 |
| NmeAIII | GCCGAG | 1 cut(s) | 198 |
| NmuCI | GTSAC | 2 cut(s) | 361, 518 |
| NspI | RCATGY | 1 cut(s) | 112 |
| PaeR7I | CTCGAG | 1 cut(s) | 845 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 234 |
| PflFI | GACNNNGTC | 1 cut(s) | 404 |
| PkrI | GCNGC | 9 cut(s) | 204, 277, 288, 355, 390, 424, 496, 538, 738 |
| PleI | GAGTC | 2 cut(s) | 175, 521 |
| PpsI | GAGTC | 2 cut(s) | 175, 521 |
| Psp124BI | GAGCTC | 1 cut(s) | 887 |
| Psp6I | CCWGG | 1 cut(s) | 723 |
| PspEI | GGTNACC | 1 cut(s) | 518 |
| PspFI | CCCAGC | 1 cut(s) | 497 |
| PspGI | CCWGG | 1 cut(s) | 723 |
| PspN4I | GGNNCC | 6 cut(s) | 150, 253, 446, 474, 674, 812 |
| PspPI | GGNCC | 6 cut(s) | 76, 130, 221, 445, 472, 500 |
| PspXI | VCTCGAGB | 1 cut(s) | 845 |
| PsuI | RGATCY | 1 cut(s) | 148 |
| PsyI | GACNNNGTC | 1 cut(s) | 404 |
| SacI | GAGCTC | 1 cut(s) | 887 |
| SalI | GTCGAC | 1 cut(s) | 407 |
| SatI | GCNGC | 9 cut(s) | 203, 276, 287, 354, 389, 423, 495, 537, 737 |
| Sau3AI | GATC | 3 cut(s) | 87, 148, 621 |
| Sau96I | GGNCC | 6 cut(s) | 76, 130, 221, 445, 472, 500 |
| SchI | GAGTC | 2 cut(s) | 175, 521 |
| ScrFI | CCNGG | 3 cut(s) | 36, 404, 725 |
| SduI | GDGCHC | 2 cut(s) | 675, 887 |
| SfaNI | GCATC | 4 cut(s) | 189, 288, 823, 831 |
| SfcI | CTRYAG | 1 cut(s) | 655 |
| Sfr274I | CTCGAG | 1 cut(s) | 845 |
| SinI | GGWCC | 2 cut(s) | 76, 445 |
| SlaI | CTCGAG | 1 cut(s) | 845 |
| SmlI | CTYRAG | 1 cut(s) | 845 |
| SmoI | CTYRAG | 1 cut(s) | 845 |
| Sse9I | AATT | 2 cut(s) | 94, 548 |
| SspMI | CTAG | 6 cut(s) | 48, 120, 302, 309, 783, 879 |
| SstI | GAGCTC | 1 cut(s) | 887 |
| StyD4I | CCNGG | 3 cut(s) | 34, 402, 723 |
| StyI | CCWWGG | 2 cut(s) | 439, 819 |
| TaaI | ACNGT | 6 cut(s) | 80, 142, 369, 490, 597, 648 |
| TaiI | ACGT | 1 cut(s) | 414 |
| TaqI | TCGA | 3 cut(s) | 408, 525, 846 |
| TasI | AATT | 2 cut(s) | 94, 548 |
| TauI | GCSGC | 5 cut(s) | 205, 356, 391, 425, 539 |
| TscAI | CASTG | 1 cut(s) | 458 |
| TseFI | GTSAC | 2 cut(s) | 361, 518 |
| TseI | GCWGC | 4 cut(s) | 275, 286, 494, 736 |
| Tsp45I | GTSAC | 2 cut(s) | 361, 518 |
| TspDTI | ATGAA | 2 cut(s) | 494, 565 |
| TspGWI | ACGGA | 2 cut(s) | 572, 670 |
| TspRI | CASTG | 1 cut(s) | 458 |
| Tth111I | GACNNNGTC | 1 cut(s) | 404 |
| VpaK11BI | GGWCC | 2 cut(s) | 76, 445 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 557, 818 |
| XapI | RAATTY | 1 cut(s) | 548 |
| XceI | RCATGY | 1 cut(s) | 112 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 721 |
| XhoI | CTCGAG | 1 cut(s) | 845 |
| XmiI | GTMKAC | 1 cut(s) | 408 |
| XspI | CTAG | 6 cut(s) | 48, 120, 302, 309, 783, 879 |