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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 783, 911 |
| AccBSI | CCGCTC | 2 cut(s) | 248, 527 |
| AccI | GTMKAC | 1 cut(s) | 285 |
| AccII | CGCG | 3 cut(s) | 77, 192, 706 |
| AccIII | TCCGGA | 1 cut(s) | 1016 |
| AclWI | GGATC | 2 cut(s) | 123, 614 |
| AcoI | YGGCCR | 5 cut(s) | 163, 511, 649, 712, 989 |
| AcuI | CTGAAG | 5 cut(s) | 69, 293, 609, 1045, 1056 |
| AcyI | GRCGYC | 4 cut(s) | 95, 363, 820, 840 |
| AfaI | GTAC | 2 cut(s) | 195, 280 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 8, 25, 419, 442, 473, 526, 629, 710, 901 |
| AgsI | TTSAA | 1 cut(s) | 1068 |
| AjiI | CACGTC | 1 cut(s) | 149 |
| AjnI | CCWGG | 1 cut(s) | 436 |
| AleI | CACNNNNGTG | 2 cut(s) | 78, 720 |
| AluBI | AGCT | 1 cut(s) | 392 |
| AluI | AGCT | 1 cut(s) | 392 |
| Alw21I | GWGCWC | 1 cut(s) | 394 |
| AlwI | GGATC | 2 cut(s) | 123, 614 |
| Ama87I | CYCGRG | 3 cut(s) | 50, 132, 376 |
| Aor13HI | TCCGGA | 1 cut(s) | 1016 |
| ApeKI | GCWGC | 6 cut(s) | 371, 489, 581, 597, 806, 809 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 83, 115 |
| AspLEI | GCGC | 2 cut(s) | 761, 941 |
| AspS9I | GGNCC | 2 cut(s) | 410, 434 |
| AsuC2I | CCSGG | 2 cut(s) | 377, 378 |
| AsuHPI | GGTGA | 3 cut(s) | 8, 228, 684 |
| AvaI | CYCGRG | 3 cut(s) | 50, 132, 376 |
| AxyI | CCTNAGG | 1 cut(s) | 687 |
| BaeGI | GKGCMC | 2 cut(s) | 328, 788 |
| BalI | TGGCCA | 1 cut(s) | 991 |
| BanI | GGYRCC | 2 cut(s) | 783, 911 |
| BanII | GRGCYC | 2 cut(s) | 51, 394 |
| BauI | CACGAG | 2 cut(s) | 167, 345 |
| BbsI | GAAGAC | 1 cut(s) | 98 |
| Bbv12I | GWGCWC | 1 cut(s) | 394 |
| BbvI | GCAGC | 6 cut(s) | 383, 501, 568, 584, 793, 821 |
| BccI | CCATC | 2 cut(s) | 902, 1066 |
| BceAI | ACGGC | 4 cut(s) | 82, 331, 498, 678 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 123, 157, 468, 502 |
| BciT130I | CCWGG | 1 cut(s) | 438 |
| BcnI | CCSGG | 2 cut(s) | 377, 378 |
| BfaI | CTAG | 4 cut(s) | 177, 643, 666, 789 |
| BfmI | CTRYAG | 2 cut(s) | 414, 807 |
| BfoI | RGCGCY | 2 cut(s) | 762, 942 |
| BglII | AGATCT | 1 cut(s) | 984 |
| Bme1390I | CCNGG | 3 cut(s) | 377, 378, 438 |
| BmeT110I | CYCGRG | 3 cut(s) | 50, 132, 376 |
| BmgBI | CACGTC | 1 cut(s) | 149 |
| BmgT120I | GGNCC | 2 cut(s) | 410, 434 |
| BmiI | GGNNCC | 5 cut(s) | 34, 139, 702, 785, 913 |
| BmrFI | CCNGG | 3 cut(s) | 377, 378, 438 |
| BmrI | ACTGGG | 2 cut(s) | 839, 970 |
| BmsI | GCATC | 5 cut(s) | 476, 485, 698, 860, 1010 |
| BmuI | ACTGGG | 2 cut(s) | 839, 970 |
| BpiI | GAAGAC | 1 cut(s) | 98 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1038, 1070 |
| Bpu10I | CCTNAGC | 2 cut(s) | 393, 919 |
| BpuMI | CCSGG | 2 cut(s) | 377, 378 |
| BsaHI | GRCGYC | 4 cut(s) | 95, 363, 820, 840 |
| BsaJI | CCNNGG | 7 cut(s) | 133, 375, 376, 436, 472, 500, 652 |
| BsaWI | WCCGGW | 1 cut(s) | 1016 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 216, 246 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 8, 25, 419, 442, 473, 526, 629, 710, 901 |
| Bse118I | RCCGGY | 2 cut(s) | 780, 848 |
| Bse1I | ACTGG | 2 cut(s) | 834, 976 |
| Bse21I | CCTNAGG | 1 cut(s) | 687 |
| Bse3DI | GCAATG | 1 cut(s) | 876 |
| BseAI | TCCGGA | 1 cut(s) | 1016 |
| BseBI | CCWGG | 1 cut(s) | 438 |
| BseDI | CCNNGG | 7 cut(s) | 133, 375, 376, 436, 472, 500, 652 |
| BseGI | GGATG | 3 cut(s) | 875, 958, 1025 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 8, 25, 419, 442, 473, 526, 629, 710, 901 |
| BseMI | GCAATG | 1 cut(s) | 876 |
| BseMII | CTCAG | 6 cut(s) | 346, 407, 678, 685, 914, 933 |
| BseNI | ACTGG | 2 cut(s) | 834, 976 |
| BseRI | GAGGAG | 2 cut(s) | 414, 713 |
| BseSI | GKGCMC | 2 cut(s) | 328, 788 |
| BseXI | GCAGC | 6 cut(s) | 383, 501, 568, 584, 793, 821 |
| BseYI | CCCAGC | 3 cut(s) | 2, 251, 960 |
| Bsh1236I | CGCG | 3 cut(s) | 77, 192, 706 |
| Bsh1285I | CGRYCG | 3 cut(s) | 285, 289, 853 |
| BshNI | GGYRCC | 2 cut(s) | 783, 911 |
| BsiEI | CGRYCG | 3 cut(s) | 285, 289, 853 |
| BsiHKAI | GWGCWC | 1 cut(s) | 394 |
| BsiHKCI | CYCGRG | 3 cut(s) | 50, 132, 376 |
| BsiSI | CCGG | 6 cut(s) | 112, 377, 781, 849, 947, 1017 |
| BsiWI | CGTACG | 1 cut(s) | 193 |
| BslFI | GGGAC | 4 cut(s) | 138, 435, 543, 560 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 8, 25, 419, 442, 473, 526, 629, 710, 901 |
| BsmFI | GGGAC | 4 cut(s) | 138, 435, 543, 560 |
| BsmI | GAATGC | 1 cut(s) | 1036 |
| BsoBI | CYCGRG | 3 cut(s) | 50, 132, 376 |
| Bsp1286I | GDGCHC | 4 cut(s) | 51, 328, 394, 788 |
| Bsp13I | TCCGGA | 1 cut(s) | 1016 |
| Bsp143I | GATC | 4 cut(s) | 128, 587, 619, 984 |
| BspCNI | CTCAG | 6 cut(s) | 345, 406, 679, 686, 913, 932 |
| BspEI | TCCGGA | 1 cut(s) | 1016 |
| BspFNI | CGCG | 3 cut(s) | 77, 192, 706 |
| BspLI | GGNNCC | 5 cut(s) | 34, 139, 702, 785, 913 |
| BspMAI | CTGCAG | 2 cut(s) | 418, 811 |
| BspPI | GGATC | 2 cut(s) | 123, 614 |
| BspT107I | GGYRCC | 2 cut(s) | 783, 911 |
| BsrBI | CCGCTC | 2 cut(s) | 248, 527 |
| BsrDI | GCAATG | 1 cut(s) | 876 |
| BsrFI | RCCGGY | 2 cut(s) | 780, 848 |
| BsrI | ACTGG | 2 cut(s) | 834, 976 |
| BssAI | RCCGGY | 2 cut(s) | 780, 848 |
| BssECI | CCNNGG | 7 cut(s) | 133, 375, 376, 436, 472, 500, 652 |
| BssMI | GATC | 4 cut(s) | 128, 587, 619, 984 |
| BssNI | GRCGYC | 4 cut(s) | 95, 363, 820, 840 |
| BssSI | CACGAG | 2 cut(s) | 167, 345 |
| BssT1I | CCWWGG | 1 cut(s) | 472 |
| Bst2BI | CACGAG | 2 cut(s) | 167, 345 |
| Bst2UI | CCWGG | 1 cut(s) | 438 |
| Bst4CI | ACNGT | 5 cut(s) | 20, 216, 283, 290, 483 |
| BstACI | GRCGYC | 4 cut(s) | 95, 363, 820, 840 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 495 |
| BstC8I | GCNNGC | 6 cut(s) | 75, 410, 414, 649, 683, 916 |
| BstDEI | CTNAG | 7 cut(s) | 332, 393, 687, 694, 865, 900, 919 |
| BstDSI | CCRYGG | 1 cut(s) | 500 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 471 |
| BstF5I | GGATG | 3 cut(s) | 875, 958, 1025 |
| BstFNI | CGCG | 3 cut(s) | 77, 192, 706 |
| BstH2I | RGCGCY | 2 cut(s) | 762, 942 |
| BstHHI | GCGC | 2 cut(s) | 761, 941 |
| BstKTI | GATC | 4 cut(s) | 131, 590, 622, 987 |
| BstMBI | GATC | 4 cut(s) | 128, 587, 619, 984 |
| BstMCI | CGRYCG | 3 cut(s) | 285, 289, 853 |
| BstNI | CCWGG | 1 cut(s) | 438 |
| BstSCI | CCNGG | 3 cut(s) | 375, 376, 436 |
| BstSFI | CTRYAG | 2 cut(s) | 414, 807 |
| BstSLI | GKGCMC | 2 cut(s) | 328, 788 |
| BstUI | CGCG | 3 cut(s) | 77, 192, 706 |
| BstV1I | GCAGC | 6 cut(s) | 383, 501, 568, 584, 793, 821 |
| BstV2I | GAAGAC | 1 cut(s) | 98 |
| BstX2I | RGATCY | 2 cut(s) | 619, 984 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 722 |
| BstYI | RGATCY | 2 cut(s) | 619, 984 |
| Bsu36I | CCTNAGG | 1 cut(s) | 687 |
| BtgI | CCRYGG | 1 cut(s) | 500 |
| BtgZI | GCGATG | 1 cut(s) | 721 |
| BtrI | CACGTC | 1 cut(s) | 149 |
| BtsCI | GGATG | 3 cut(s) | 875, 958, 1025 |
| Cac8I | GCNNGC | 6 cut(s) | 75, 410, 414, 649, 683, 916 |
| CfoI | GCGC | 2 cut(s) | 761, 941 |
| Cfr10I | RCCGGY | 2 cut(s) | 780, 848 |
| Cfr13I | GGNCC | 2 cut(s) | 410, 434 |
| Cfr9I | CCCGGG | 1 cut(s) | 376 |
| CseI | GACGC | 4 cut(s) | 103, 352, 809, 829 |
| Csp6I | GTAC | 2 cut(s) | 194, 279 |
| CviAII | CATG | 1 cut(s) | 845 |
| CviQI | GTAC | 2 cut(s) | 194, 279 |
| DdeI | CTNAG | 7 cut(s) | 332, 393, 687, 694, 865, 900, 919 |
| DpnI | GATC | 4 cut(s) | 130, 589, 621, 986 |
| DpnII | GATC | 4 cut(s) | 128, 587, 619, 984 |
| EaeI | YGGCCR | 5 cut(s) | 163, 511, 649, 712, 989 |
| EciI | GGCGGA | 2 cut(s) | 759, 965 |
| Ecl136II | GAGCTC | 1 cut(s) | 392 |
| Eco130I | CCWWGG | 1 cut(s) | 472 |
| Eco147I | AGGCCT | 1 cut(s) | 56 |
| Eco24I | GRGCYC | 2 cut(s) | 51, 394 |
| Eco53kI | GAGCTC | 1 cut(s) | 392 |
| Eco57I | CTGAAG | 5 cut(s) | 69, 293, 609, 1045, 1056 |
| Eco81I | CCTNAGG | 1 cut(s) | 687 |
| Eco88I | CYCGRG | 3 cut(s) | 50, 132, 376 |
| EcoICRI | GAGCTC | 1 cut(s) | 392 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 471 |
| EcoRII | CCWGG | 1 cut(s) | 436 |
| EcoT14I | CCWWGG | 1 cut(s) | 472 |
| EcoT38I | GRGCYC | 2 cut(s) | 51, 394 |
| ErhI | CCWWGG | 1 cut(s) | 472 |
| FaeI | CATG | 1 cut(s) | 848 |
| FaiI | YATR | 4 cut(s) | 573, 731, 751, 846 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 925, 957 |
| FaqI | GGGAC | 4 cut(s) | 138, 435, 543, 560 |
| FatI | CATG | 1 cut(s) | 844 |
| FauI | CCCGC | 6 cut(s) | 17, 70, 108, 401, 520, 622 |
| FblI | GTMKAC | 1 cut(s) | 285 |
| FokI | GGATG | 3 cut(s) | 882, 965, 1032 |
| FriOI | GRGCYC | 2 cut(s) | 51, 394 |
| FspBI | CTAG | 4 cut(s) | 177, 643, 666, 789 |
| GlaI | GCGC | 2 cut(s) | 760, 940 |
| GsaI | CCCAGC | 3 cut(s) | 6, 255, 964 |
| HaeII | RGCGCY | 2 cut(s) | 762, 942 |
| HapII | CCGG | 6 cut(s) | 112, 377, 781, 849, 947, 1017 |
| HgaI | GACGC | 4 cut(s) | 103, 352, 809, 829 |
| HhaI | GCGC | 2 cut(s) | 761, 941 |
| Hin1I | GRCGYC | 4 cut(s) | 95, 363, 820, 840 |
| Hin1II | CATG | 1 cut(s) | 848 |
| Hin6I | GCGC | 2 cut(s) | 759, 939 |
| HinP1I | GCGC | 2 cut(s) | 759, 939 |
| HincII | GTYRAC | 2 cut(s) | 286, 296 |
| HindII | GTYRAC | 2 cut(s) | 286, 296 |
| HinfI | GANTC | 5 cut(s) | 180, 633, 726, 956, 967 |
| HpaII | CCGG | 6 cut(s) | 112, 377, 781, 849, 947, 1017 |
| HphI | GGTGA | 3 cut(s) | 8, 228, 684 |
| Hpy166II | GTNNAC | 2 cut(s) | 286, 296 |
| Hpy188I | TCNGA | 2 cut(s) | 103, 982 |
| Hpy188III | TCNNGA | 2 cut(s) | 132, 1017 |
| Hpy8I | GTNNAC | 2 cut(s) | 286, 296 |
| Hpy99I | CGWCG | 3 cut(s) | 294, 368, 519 |
| HpyAV | CCTTC | 8 cut(s) | 114, 317, 633, 749, 770, 830, 1020, 1031 |
| HpyCH4III | ACNGT | 5 cut(s) | 20, 216, 283, 290, 483 |
| HpyCH4IV | ACGT | 2 cut(s) | 148, 196 |
| HpyCH4V | TGCA | 5 cut(s) | 416, 489, 584, 809, 881 |
| HpyF3I | CTNAG | 7 cut(s) | 332, 393, 687, 694, 865, 900, 919 |
| HpySE526I | ACGT | 2 cut(s) | 148, 196 |
| Hsp92I | GRCGYC | 4 cut(s) | 95, 363, 820, 840 |
| Hsp92II | CATG | 1 cut(s) | 848 |
| HspAI | GCGC | 2 cut(s) | 759, 939 |
| Kpn2I | TCCGGA | 1 cut(s) | 1016 |
| Kzo9I | GATC | 4 cut(s) | 128, 587, 619, 984 |
| LmnI | GCTCC | 5 cut(s) | 32, 458, 563, 700, 878 |
| Lsp1109I | GCAGC | 6 cut(s) | 383, 501, 568, 584, 793, 821 |
| LweI | GCATC | 5 cut(s) | 476, 485, 698, 860, 1010 |
| MaeI | CTAG | 4 cut(s) | 177, 643, 666, 789 |
| MaeII | ACGT | 2 cut(s) | 148, 196 |
| MalI | GATC | 4 cut(s) | 130, 589, 621, 986 |
| MbiI | CCGCTC | 2 cut(s) | 248, 527 |
| MboI | GATC | 4 cut(s) | 128, 587, 619, 984 |
| MboII | GAAGA | 1 cut(s) | 103 |
| MflI | RGATCY | 2 cut(s) | 619, 984 |
| MhlI | GDGCHC | 4 cut(s) | 51, 328, 394, 788 |
| MlsI | TGGCCA | 1 cut(s) | 991 |
| MluCI | AATT | 2 cut(s) | 104, 549 |
| MluNI | TGGCCA | 1 cut(s) | 991 |
| MlyI | GAGTC | 5 cut(s) | 174, 642, 735, 950, 961 |
| MmeI | TCCRAC | 3 cut(s) | 10, 541, 960 |
| Mox20I | TGGCCA | 1 cut(s) | 991 |
| MroI | TCCGGA | 1 cut(s) | 1016 |
| MscI | TGGCCA | 1 cut(s) | 991 |
| MseI | TTAA | 1 cut(s) | 658 |
| MslI | CAYNNNNRTG | 3 cut(s) | 78, 241, 720 |
| Msp20I | TGGCCA | 1 cut(s) | 991 |
| MspA1I | CMGCKG | 5 cut(s) | 6, 38, 629, 720, 964 |
| MspI | CCGG | 6 cut(s) | 112, 377, 781, 849, 947, 1017 |
| MspR9I | CCNGG | 3 cut(s) | 377, 378, 438 |
| Mva1269I | GAATGC | 1 cut(s) | 1036 |
| MvaI | CCWGG | 1 cut(s) | 438 |
| MvnI | CGCG | 3 cut(s) | 77, 192, 706 |
| NciI | CCSGG | 2 cut(s) | 377, 378 |
| NdeII | GATC | 4 cut(s) | 128, 587, 619, 984 |
| NlaIII | CATG | 1 cut(s) | 848 |
| NlaIV | GGNNCC | 5 cut(s) | 34, 139, 702, 785, 913 |
| NmeAIII | GCCGAG | 2 cut(s) | 677, 1070 |
| OliI | CACNNNNGTG | 2 cut(s) | 78, 720 |
| PaeR7I | CTCGAG | 1 cut(s) | 50 |
| PceI | AGGCCT | 1 cut(s) | 56 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 48 |
| PctI | GAATGC | 1 cut(s) | 1036 |
| Pfl23II | CGTACG | 1 cut(s) | 193 |
| PflFI | GACNNNGTC | 1 cut(s) | 97 |
| PleI | GAGTC | 5 cut(s) | 174, 641, 734, 950, 961 |
| PpsI | GAGTC | 5 cut(s) | 174, 641, 734, 950, 961 |
| Psp124BI | GAGCTC | 1 cut(s) | 394 |
| Psp6I | CCWGG | 1 cut(s) | 436 |
| PspFI | CCCAGC | 3 cut(s) | 2, 251, 960 |
| PspGI | CCWGG | 1 cut(s) | 436 |
| PspLI | CGTACG | 1 cut(s) | 193 |
| PspN4I | GGNNCC | 5 cut(s) | 34, 139, 702, 785, 913 |
| PspPI | GGNCC | 2 cut(s) | 410, 434 |
| PspXI | VCTCGAGB | 1 cut(s) | 50 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 186, 218 |
| PstI | CTGCAG | 2 cut(s) | 418, 811 |
| PsuI | RGATCY | 2 cut(s) | 619, 984 |
| PsyI | GACNNNGTC | 1 cut(s) | 97 |
| RsaI | GTAC | 2 cut(s) | 195, 280 |
| RsaNI | GTAC | 2 cut(s) | 194, 279 |
| RseI | CAYNNNNRTG | 3 cut(s) | 78, 241, 720 |
| SacI | GAGCTC | 1 cut(s) | 394 |
| SalI | GTCGAC | 1 cut(s) | 284 |
| SaqAI | TTAA | 1 cut(s) | 658 |
| Sau3AI | GATC | 4 cut(s) | 128, 587, 619, 984 |
| Sau96I | GGNCC | 2 cut(s) | 410, 434 |
| SchI | GAGTC | 5 cut(s) | 174, 642, 735, 950, 961 |
| ScrFI | CCNGG | 3 cut(s) | 377, 378, 438 |
| SduI | GDGCHC | 4 cut(s) | 51, 328, 394, 788 |
| SfaNI | GCATC | 5 cut(s) | 476, 485, 698, 860, 1010 |
| SfcI | CTRYAG | 2 cut(s) | 414, 807 |
| Sfr274I | CTCGAG | 1 cut(s) | 50 |
| SlaI | CTCGAG | 1 cut(s) | 50 |
| SmaI | CCCGGG | 1 cut(s) | 378 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 78, 241, 720 |
| SmlI | CTYRAG | 1 cut(s) | 50 |
| SmoI | CTYRAG | 1 cut(s) | 50 |
| Sse9I | AATT | 2 cut(s) | 104, 549 |
| SseBI | AGGCCT | 1 cut(s) | 56 |
| SspMI | CTAG | 4 cut(s) | 177, 643, 666, 789 |
| SstI | GAGCTC | 1 cut(s) | 394 |
| StuI | AGGCCT | 1 cut(s) | 56 |
| StyD4I | CCNGG | 3 cut(s) | 375, 376, 436 |
| StyI | CCWWGG | 1 cut(s) | 472 |
| TaaI | ACNGT | 5 cut(s) | 20, 216, 283, 290, 483 |
| TaiI | ACGT | 2 cut(s) | 151, 199 |
| TaqI | TCGA | 3 cut(s) | 51, 285, 366 |
| TasI | AATT | 2 cut(s) | 104, 549 |
| Tru1I | TTAA | 1 cut(s) | 658 |
| Tru9I | TTAA | 1 cut(s) | 658 |
| TseI | GCWGC | 6 cut(s) | 371, 489, 581, 597, 806, 809 |
| TspMI | CCCGGG | 1 cut(s) | 376 |
| Tth111I | GACNNNGTC | 1 cut(s) | 97 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 471 |
| XhoI | CTCGAG | 1 cut(s) | 50 |
| XmaI | CCCGGG | 1 cut(s) | 376 |
| XmiI | GTMKAC | 1 cut(s) | 285 |
| XspI | CTAG | 4 cut(s) | 177, 643, 666, 789 |