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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 115 |
| Acc65I | GGTACC | 2 cut(s) | 200, 1703 |
| AccB1I | GGYRCC | 4 cut(s) | 200, 709, 1457, 1703 |
| AccBSI | CCGCTC | 2 cut(s) | 1045, 1593 |
| AccI | GTMKAC | 1 cut(s) | 417 |
| AccII | CGCG | 8 cut(s) | 324, 339, 482, 498, 773, 824, 1380, 1734 |
| AclWI | GGATC | 1 cut(s) | 1744 |
| AcoI | YGGCCR | 6 cut(s) | 714, 898, 1185, 1386, 1464, 1753 |
| AcsI | RAATTY | 2 cut(s) | 998, 1022 |
| AcuI | CTGAAG | 2 cut(s) | 1283, 1797 |
| AcyI | GRCGYC | 4 cut(s) | 474, 710, 1170, 1661 |
| AdeI | CACNNNGTG | 1 cut(s) | 725 |
| AfaI | GTAC | 5 cut(s) | 98, 202, 311, 530, 1705 |
| AflIII | ACRYGT | 1 cut(s) | 1245 |
| AgsI | TTSAA | 3 cut(s) | 443, 998, 1292 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 795, 1719 |
| AjiI | CACGTC | 1 cut(s) | 946 |
| AjnI | CCWGG | 5 cut(s) | 516, 660, 812, 1461, 1538 |
| AluBI | AGCT | 1 cut(s) | 973 |
| AluI | AGCT | 1 cut(s) | 973 |
| Alw26I | GTCTC | 4 cut(s) | 967, 1197, 1254, 1706 |
| AlwI | GGATC | 1 cut(s) | 1744 |
| Ama87I | CYCGRG | 3 cut(s) | 964, 1594, 1692 |
| ApeKI | GCWGC | 6 cut(s) | 649, 743, 1255, 1382, 1483, 1797 |
| ApoI | RAATTY | 2 cut(s) | 998, 1022 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1296 |
| Asp718I | GGTACC | 2 cut(s) | 200, 1703 |
| AspLEI | GCGC | 8 cut(s) | 22, 154, 500, 583, 712, 748, 1382, 1496 |
| AsuC2I | CCSGG | 3 cut(s) | 569, 1265, 1622 |
| AsuHPI | GGTGA | 7 cut(s) | 583, 653, 1025, 1025, 1279, 1358, 1574 |
| AvaI | CYCGRG | 3 cut(s) | 964, 1594, 1692 |
| AvaII | GGWCC | 8 cut(s) | 56, 243, 565, 797, 923, 1515, 1547, 1641 |
| BaeGI | GKGCMC | 1 cut(s) | 1462 |
| BalI | TGGCCA | 1 cut(s) | 1466 |
| BanI | GGYRCC | 4 cut(s) | 200, 709, 1457, 1703 |
| BauI | CACGAG | 1 cut(s) | 432 |
| BbsI | GAAGAC | 2 cut(s) | 383, 560 |
| BbvCI | CCTCAGC | 1 cut(s) | 1368 |
| BbvI | GCAGC | 6 cut(s) | 636, 755, 1242, 1369, 1495, 1809 |
| BccI | CCATC | 5 cut(s) | 299, 639, 1559, 1577, 1694 |
| BceAI | ACGGC | 6 cut(s) | 453, 674, 737, 863, 1172, 1352 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1142, 1176 |
| BciT130I | CCWGG | 5 cut(s) | 518, 662, 814, 1463, 1540 |
| BcnI | CCSGG | 3 cut(s) | 569, 1265, 1622 |
| BcoDI | GTCTC | 4 cut(s) | 967, 1197, 1254, 1706 |
| BfaI | CTAG | 2 cut(s) | 974, 1064 |
| BfmI | CTRYAG | 2 cut(s) | 1088, 1725 |
| BfoI | RGCGCY | 5 cut(s) | 23, 155, 584, 713, 1497 |
| BfuAI | ACCTGC | 1 cut(s) | 115 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1322 |
| BlpI | GCTNAGC | 1 cut(s) | 584 |
| Bme1390I | CCNGG | 8 cut(s) | 518, 569, 662, 814, 1265, 1463, 1540, 1622 |
| Bme18I | GGWCC | 8 cut(s) | 56, 243, 565, 797, 923, 1515, 1547, 1641 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 795, 1719 |
| BmeT110I | CYCGRG | 3 cut(s) | 964, 1594, 1692 |
| BmgBI | CACGTC | 1 cut(s) | 946 |
| BmrFI | CCNGG | 8 cut(s) | 518, 569, 662, 814, 1265, 1463, 1540, 1622 |
| BmrI | ACTGGG | 4 cut(s) | 900, 1513, 1645, 1713 |
| BmsI | GCATC | 6 cut(s) | 3, 357, 631, 865, 1150, 1777 |
| BmuI | ACTGGG | 4 cut(s) | 900, 1513, 1645, 1713 |
| BoxI | GACNNNNGTC | 2 cut(s) | 387, 434 |
| BpiI | GAAGAC | 2 cut(s) | 383, 560 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 947, 979, 962, 994, 1011, 1043 |
| BpmI | CTGGAG | 1 cut(s) | 1361 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1368 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 584 |
| BpuEI | CTTGAG | 1 cut(s) | 193 |
| BpuMI | CCSGG | 3 cut(s) | 569, 1265, 1622 |
| BsaAI | YACGTR | 1 cut(s) | 100 |
| BsaHI | GRCGYC | 4 cut(s) | 474, 710, 1170, 1661 |
| BsaI | GGTCTC | 3 cut(s) | 967, 1254, 1706 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 248, 278 |
| Bse118I | RCCGGY | 3 cut(s) | 712, 896, 1454 |
| Bse1I | ACTGG | 7 cut(s) | 96, 197, 676, 895, 1508, 1651, 1719 |
| BseBI | CCWGG | 5 cut(s) | 518, 662, 814, 1463, 1540 |
| BseGI | GGATG | 4 cut(s) | 291, 880, 1633, 1705 |
| BseMII | CTCAG | 7 cut(s) | 125, 563, 585, 870, 1352, 1359, 1589 |
| BseNI | ACTGG | 7 cut(s) | 96, 197, 676, 895, 1508, 1651, 1719 |
| BseRI | GAGGAG | 2 cut(s) | 884, 971 |
| BseSI | GKGCMC | 1 cut(s) | 1462 |
| BseX3I | CGGCCG | 1 cut(s) | 1386 |
| BseXI | GCAGC | 6 cut(s) | 636, 755, 1242, 1369, 1495, 1809 |
| BseYI | CCCAGC | 4 cut(s) | 402, 751, 1048, 1635 |
| BsgI | GTGCAG | 3 cut(s) | 62, 752, 1689 |
| Bsh1236I | CGCG | 8 cut(s) | 324, 339, 482, 498, 773, 824, 1380, 1734 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1389 |
| BshNI | GGYRCC | 4 cut(s) | 200, 709, 1457, 1703 |
| BsiEI | CGRYCG | 1 cut(s) | 1389 |
| BsiHKCI | CYCGRG | 3 cut(s) | 964, 1594, 1692 |
| BsiSI | CCGG | 8 cut(s) | 569, 713, 897, 1264, 1455, 1622, 1769, 1855 |
| BslFI | GGGAC | 3 cut(s) | 69, 1234, 1648 |
| BsmAI | GTCTC | 4 cut(s) | 967, 1197, 1254, 1706 |
| BsmFI | GGGAC | 3 cut(s) | 69, 1234, 1648 |
| Bso31I | GGTCTC | 3 cut(s) | 967, 1254, 1706 |
| BsoBI | CYCGRG | 3 cut(s) | 964, 1594, 1692 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1462 |
| Bsp143I | GATC | 2 cut(s) | 162, 1736 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 584 |
| Bsp68I | TCGCGA | 2 cut(s) | 324, 482 |
| BspCNI | CTCAG | 7 cut(s) | 126, 562, 586, 869, 1353, 1360, 1588 |
| BspFNI | CGCG | 8 cut(s) | 324, 339, 482, 498, 773, 824, 1380, 1734 |
| BspMI | ACCTGC | 1 cut(s) | 115 |
| BspPI | GGATC | 1 cut(s) | 1744 |
| BspT107I | GGYRCC | 4 cut(s) | 200, 709, 1457, 1703 |
| BspTNI | GGTCTC | 3 cut(s) | 967, 1254, 1706 |
| BsrBI | CCGCTC | 2 cut(s) | 1045, 1593 |
| BsrFI | RCCGGY | 3 cut(s) | 712, 896, 1454 |
| BsrI | ACTGG | 7 cut(s) | 96, 197, 676, 895, 1508, 1651, 1719 |
| BssAI | RCCGGY | 3 cut(s) | 712, 896, 1454 |
| BssMI | GATC | 2 cut(s) | 162, 1736 |
| BssNI | GRCGYC | 4 cut(s) | 474, 710, 1170, 1661 |
| BssSI | CACGAG | 1 cut(s) | 432 |
| BssT1I | CCWWGG | 3 cut(s) | 109, 145, 1275 |
| Bst2BI | CACGAG | 1 cut(s) | 432 |
| Bst2UI | CCWGG | 5 cut(s) | 518, 662, 814, 1463, 1540 |
| Bst4CI | ACNGT | 6 cut(s) | 64, 559, 1157, 1224, 1396, 1413 |
| Bst6I | CTCTTC | 2 cut(s) | 324, 861 |
| BstACI | GRCGYC | 4 cut(s) | 474, 710, 1170, 1661 |
| BstBAI | YACGTR | 1 cut(s) | 100 |
| BstDEI | CTNAG | 8 cut(s) | 134, 549, 584, 594, 856, 1361, 1368, 1575 |
| BstDSI | CCRYGG | 4 cut(s) | 879, 1174, 1395, 1732 |
| BstEII | GGTNACC | 1 cut(s) | 1267 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 855, 1007 |
| BstF5I | GGATG | 4 cut(s) | 291, 880, 1633, 1705 |
| BstFNI | CGCG | 8 cut(s) | 324, 339, 482, 498, 773, 824, 1380, 1734 |
| BstH2I | RGCGCY | 5 cut(s) | 23, 155, 584, 713, 1497 |
| BstHHI | GCGC | 8 cut(s) | 22, 154, 500, 583, 712, 748, 1382, 1496 |
| BstKTI | GATC | 2 cut(s) | 165, 1739 |
| BstMAI | GTCTC | 4 cut(s) | 967, 1197, 1254, 1706 |
| BstMBI | GATC | 2 cut(s) | 162, 1736 |
| BstMCI | CGRYCG | 1 cut(s) | 1389 |
| BstNI | CCWGG | 5 cut(s) | 518, 662, 814, 1463, 1540 |
| BstNSI | RCATGY | 1 cut(s) | 1249 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 387, 434 |
| BstPI | GGTNACC | 1 cut(s) | 1267 |
| BstSCI | CCNGG | 8 cut(s) | 516, 567, 660, 812, 1263, 1461, 1538, 1620 |
| BstSFI | CTRYAG | 2 cut(s) | 1088, 1725 |
| BstSLI | GKGCMC | 1 cut(s) | 1462 |
| BstUI | CGCG | 8 cut(s) | 324, 339, 482, 498, 773, 824, 1380, 1734 |
| BstV1I | GCAGC | 6 cut(s) | 636, 755, 1242, 1369, 1495, 1809 |
| BstV2I | GAAGAC | 2 cut(s) | 383, 560 |
| BstX2I | RGATCY | 1 cut(s) | 1736 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 298 |
| BstYI | RGATCY | 1 cut(s) | 1736 |
| BstZI | CGGCCG | 1 cut(s) | 1386 |
| BtgI | CCRYGG | 4 cut(s) | 879, 1174, 1395, 1732 |
| BtrI | CACGTC | 1 cut(s) | 946 |
| BtsCI | GGATG | 4 cut(s) | 291, 880, 1633, 1705 |
| BtsIMutI | CAGTG | 2 cut(s) | 1433, 1773 |
| BtuMI | TCGCGA | 2 cut(s) | 324, 482 |
| BveI | ACCTGC | 1 cut(s) | 115 |
| CciNI | GCGGCCGC | 1 cut(s) | 1386 |
| CfoI | GCGC | 8 cut(s) | 22, 154, 500, 583, 712, 748, 1382, 1496 |
| Cfr10I | RCCGGY | 3 cut(s) | 712, 896, 1454 |
| Cfr42I | CCGCGG | 1 cut(s) | 1735 |
| CseI | GACGC | 5 cut(s) | 482, 583, 1146, 1178, 1650 |
| Csp6I | GTAC | 5 cut(s) | 97, 201, 310, 529, 1704 |
| CviAII | CATG | 5 cut(s) | 490, 526, 616, 1246, 1519 |
| CviQI | GTAC | 5 cut(s) | 97, 201, 310, 529, 1704 |
| DdeI | CTNAG | 8 cut(s) | 134, 549, 584, 594, 856, 1361, 1368, 1575 |
| DinI | GGCGCC | 1 cut(s) | 711 |
| DpnI | GATC | 2 cut(s) | 164, 1738 |
| DpnII | GATC | 2 cut(s) | 162, 1736 |
| DraIII | CACNNNGTG | 1 cut(s) | 725 |
| DriI | GACNNNNNGTC | 2 cut(s) | 795, 1719 |
| EaeI | YGGCCR | 6 cut(s) | 714, 898, 1185, 1386, 1464, 1753 |
| EagI | CGGCCG | 1 cut(s) | 1386 |
| Eam1104I | CTCTTC | 2 cut(s) | 324, 861 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 795, 1719 |
| EarI | CTCTTC | 2 cut(s) | 324, 861 |
| EciI | GGCGGA | 5 cut(s) | 83, 379, 438, 1640, 1712 |
| EclXI | CGGCCG | 1 cut(s) | 1386 |
| Eco130I | CCWWGG | 3 cut(s) | 109, 145, 1275 |
| Eco147I | AGGCCT | 2 cut(s) | 805, 1086 |
| Eco31I | GGTCTC | 3 cut(s) | 967, 1254, 1706 |
| Eco47I | GGWCC | 8 cut(s) | 56, 243, 565, 797, 923, 1515, 1547, 1641 |
| Eco52I | CGGCCG | 1 cut(s) | 1386 |
| Eco57I | CTGAAG | 2 cut(s) | 1283, 1797 |
| Eco88I | CYCGRG | 3 cut(s) | 964, 1594, 1692 |
| Eco91I | GGTNACC | 1 cut(s) | 1267 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 855, 1007 |
| EcoO65I | GGTNACC | 1 cut(s) | 1267 |
| EcoRI | GAATTC | 1 cut(s) | 998 |
| EcoRII | CCWGG | 5 cut(s) | 516, 660, 812, 1461, 1538 |
| EcoT14I | CCWWGG | 3 cut(s) | 109, 145, 1275 |
| EgeI | GGCGCC | 1 cut(s) | 711 |
| EheI | GGCGCC | 1 cut(s) | 711 |
| ErhI | CCWWGG | 3 cut(s) | 109, 145, 1275 |
| FaeI | CATG | 5 cut(s) | 493, 529, 619, 1249, 1522 |
| FaiI | YATR | 9 cut(s) | 34, 491, 527, 617, 1247, 1405, 1520, 1689, 1709 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1600, 1632, 1794, 1826, 1808, 1840 |
| FaqI | GGGAC | 3 cut(s) | 69, 1234, 1648 |
| FatI | CATG | 5 cut(s) | 489, 525, 615, 1245, 1518 |
| FauI | CCCGC | 7 cut(s) | 189, 232, 766, 817, 1296, 1595, 1739 |
| FblI | GTMKAC | 1 cut(s) | 417 |
| FokI | GGATG | 4 cut(s) | 278, 887, 1640, 1712 |
| FseI | GGCCGGCC | 1 cut(s) | 900 |
| FspBI | CTAG | 2 cut(s) | 974, 1064 |
| GlaI | GCGC | 8 cut(s) | 21, 153, 499, 582, 711, 747, 1381, 1495 |
| GsaI | CCCAGC | 4 cut(s) | 406, 755, 1052, 1639 |
| GsuI | CTGGAG | 1 cut(s) | 1361 |
| HaeII | RGCGCY | 5 cut(s) | 23, 155, 584, 713, 1497 |
| HapII | CCGG | 8 cut(s) | 569, 713, 897, 1264, 1455, 1622, 1769, 1855 |
| HgaI | GACGC | 5 cut(s) | 482, 583, 1146, 1178, 1650 |
| HhaI | GCGC | 8 cut(s) | 22, 154, 500, 583, 712, 748, 1382, 1496 |
| Hin1I | GRCGYC | 4 cut(s) | 474, 710, 1170, 1661 |
| Hin1II | CATG | 5 cut(s) | 493, 529, 619, 1249, 1522 |
| Hin6I | GCGC | 8 cut(s) | 20, 152, 498, 581, 710, 746, 1380, 1494 |
| HinP1I | GCGC | 8 cut(s) | 20, 152, 498, 581, 710, 746, 1380, 1494 |
| HincII | GTYRAC | 1 cut(s) | 418 |
| HindII | GTYRAC | 1 cut(s) | 418 |
| HpaII | CCGG | 8 cut(s) | 569, 713, 897, 1264, 1455, 1622, 1769, 1855 |
| HphI | GGTGA | 7 cut(s) | 583, 653, 1025, 1025, 1279, 1358, 1574 |
| Hpy166II | GTNNAC | 4 cut(s) | 97, 103, 418, 565 |
| Hpy188III | TCNNGA | 4 cut(s) | 166, 323, 481, 964 |
| Hpy8I | GTNNAC | 4 cut(s) | 97, 103, 418, 565 |
| Hpy99I | CGWCG | 6 cut(s) | 223, 265, 793, 1140, 1193, 1555 |
| HpyCH4III | ACNGT | 6 cut(s) | 64, 559, 1157, 1224, 1396, 1413 |
| HpyCH4IV | ACGT | 3 cut(s) | 99, 263, 945 |
| HpyCH4V | TGCA | 5 cut(s) | 79, 117, 733, 1483, 1670 |
| HpyF3I | CTNAG | 8 cut(s) | 134, 549, 584, 594, 856, 1361, 1368, 1575 |
| HpySE526I | ACGT | 3 cut(s) | 99, 263, 945 |
| Hsp92I | GRCGYC | 4 cut(s) | 474, 710, 1170, 1661 |
| Hsp92II | CATG | 5 cut(s) | 493, 529, 619, 1249, 1522 |
| HspAI | GCGC | 8 cut(s) | 20, 152, 498, 581, 710, 746, 1380, 1494 |
| KasI | GGCGCC | 1 cut(s) | 709 |
| KpnI | GGTACC | 2 cut(s) | 204, 1707 |
| KroI | GCCGGC | 2 cut(s) | 712, 896 |
| KroNI | GCCGGC | 2 cut(s) | 714, 898 |
| KspI | CCGCGG | 1 cut(s) | 1735 |
| Kzo9I | GATC | 2 cut(s) | 162, 1736 |
| LmnI | GCTCC | 6 cut(s) | 149, 256, 781, 1210, 1237, 1374 |
| Lsp1109I | GCAGC | 6 cut(s) | 636, 755, 1242, 1369, 1495, 1809 |
| LweI | GCATC | 6 cut(s) | 3, 357, 631, 865, 1150, 1777 |
| MaeI | CTAG | 2 cut(s) | 974, 1064 |
| MaeII | ACGT | 3 cut(s) | 99, 263, 945 |
| MaeIII | GTNAC | 5 cut(s) | 470, 571, 641, 763, 1267 |
| MalI | GATC | 2 cut(s) | 164, 1738 |
| MbiI | CCGCTC | 2 cut(s) | 1045, 1593 |
| MboI | GATC | 2 cut(s) | 162, 1736 |
| MboII | GAAGA | 7 cut(s) | 338, 341, 383, 565, 748, 878, 919 |
| MflI | RGATCY | 1 cut(s) | 1736 |
| MhlI | GDGCHC | 1 cut(s) | 1462 |
| MlsI | TGGCCA | 1 cut(s) | 1466 |
| MluCI | AATT | 6 cut(s) | 270, 504, 511, 998, 1022, 1071 |
| MluNI | TGGCCA | 1 cut(s) | 1466 |
| Mly113I | GGCGCC | 1 cut(s) | 710 |
| MlyI | GAGTC | 8 cut(s) | 145, 313, 424, 848, 971, 1316, 1409, 1625 |
| MmeI | TCCRAC | 6 cut(s) | 258, 270, 759, 950, 1215, 1635 |
| Mox20I | TGGCCA | 1 cut(s) | 1466 |
| MroNI | GCCGGC | 2 cut(s) | 712, 896 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1296 |
| MscI | TGGCCA | 1 cut(s) | 1466 |
| MseI | TTAA | 2 cut(s) | 273, 1332 |
| MslI | CAYNNNNRTG | 1 cut(s) | 296 |
| Msp20I | TGGCCA | 1 cut(s) | 1466 |
| MspA1I | CMGCKG | 4 cut(s) | 1303, 1639, 1734, 1752 |
| MspI | CCGG | 8 cut(s) | 569, 713, 897, 1264, 1455, 1622, 1769, 1855 |
| MspR9I | CCNGG | 8 cut(s) | 518, 569, 662, 814, 1265, 1463, 1540, 1622 |
| MvaI | CCWGG | 5 cut(s) | 518, 662, 814, 1463, 1540 |
| MvnI | CGCG | 8 cut(s) | 324, 339, 482, 498, 773, 824, 1380, 1734 |
| NaeI | GCCGGC | 2 cut(s) | 714, 898 |
| NarI | GGCGCC | 1 cut(s) | 710 |
| NciI | CCSGG | 3 cut(s) | 569, 1265, 1622 |
| NdeII | GATC | 2 cut(s) | 162, 1736 |
| NgoMIV | GCCGGC | 2 cut(s) | 712, 896 |
| NlaIII | CATG | 5 cut(s) | 493, 529, 619, 1249, 1522 |
| NmeAIII | GCCGAG | 2 cut(s) | 477, 1351 |
| NmuCI | GTSAC | 5 cut(s) | 470, 571, 641, 763, 1267 |
| NotI | GCGGCCGC | 1 cut(s) | 1386 |
| NruI | TCGCGA | 2 cut(s) | 324, 482 |
| NspI | RCATGY | 1 cut(s) | 1249 |
| PaeR7I | CTCGAG | 1 cut(s) | 964 |
| PceI | AGGCCT | 2 cut(s) | 805, 1086 |
| PciI | ACATGT | 1 cut(s) | 1245 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 797 |
| PdiI | GCCGGC | 2 cut(s) | 714, 898 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1296 |
| PfeI | GAWTC | 3 cut(s) | 179, 367, 521 |
| PfoI | TCCNGGA | 1 cut(s) | 516 |
| PleI | GAGTC | 8 cut(s) | 144, 313, 424, 848, 971, 1315, 1408, 1625 |
| PluTI | GGCGCC | 1 cut(s) | 713 |
| PpsI | GAGTC | 8 cut(s) | 144, 313, 424, 848, 971, 1315, 1408, 1625 |
| Ppu21I | YACGTR | 1 cut(s) | 100 |
| PscI | ACATGT | 1 cut(s) | 1245 |
| PshAI | GACNNNNGTC | 2 cut(s) | 387, 434 |
| Psp6I | CCWGG | 5 cut(s) | 516, 660, 812, 1461, 1538 |
| PspEI | GGTNACC | 1 cut(s) | 1267 |
| PspFI | CCCAGC | 4 cut(s) | 402, 751, 1048, 1635 |
| PspGI | CCWGG | 5 cut(s) | 516, 660, 812, 1461, 1538 |
| PsuI | RGATCY | 1 cut(s) | 1736 |
| RigI | GGCCGGCC | 1 cut(s) | 900 |
| RruI | TCGCGA | 2 cut(s) | 324, 482 |
| RsaI | GTAC | 5 cut(s) | 98, 202, 311, 530, 1705 |
| RsaNI | GTAC | 5 cut(s) | 97, 201, 310, 529, 1704 |
| RseI | CAYNNNNRTG | 1 cut(s) | 296 |
| SacII | CCGCGG | 1 cut(s) | 1735 |
| SalI | GTCGAC | 1 cut(s) | 416 |
| SaqAI | TTAA | 2 cut(s) | 273, 1332 |
| Sau3AI | GATC | 2 cut(s) | 162, 1736 |
| SchI | GAGTC | 8 cut(s) | 145, 313, 424, 848, 971, 1316, 1409, 1625 |
| ScrFI | CCNGG | 8 cut(s) | 518, 569, 662, 814, 1265, 1463, 1540, 1622 |
| SduI | GDGCHC | 1 cut(s) | 1462 |
| SfaNI | GCATC | 6 cut(s) | 3, 357, 631, 865, 1150, 1777 |
| SfcI | CTRYAG | 2 cut(s) | 1088, 1725 |
| SfoI | GGCGCC | 1 cut(s) | 711 |
| Sfr274I | CTCGAG | 1 cut(s) | 964 |
| Sfr303I | CCGCGG | 1 cut(s) | 1735 |
| SgrBI | CCGCGG | 1 cut(s) | 1735 |
| SinI | GGWCC | 8 cut(s) | 56, 243, 565, 797, 923, 1515, 1547, 1641 |
| SlaI | CTCGAG | 1 cut(s) | 964 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 296 |
| SmlI | CTYRAG | 2 cut(s) | 172, 964 |
| SmoI | CTYRAG | 2 cut(s) | 172, 964 |
| Sse9I | AATT | 6 cut(s) | 270, 504, 511, 998, 1022, 1071 |
| SseBI | AGGCCT | 2 cut(s) | 805, 1086 |
| SspDI | GGCGCC | 1 cut(s) | 709 |
| SspMI | CTAG | 2 cut(s) | 974, 1064 |
| StuI | AGGCCT | 2 cut(s) | 805, 1086 |
| StyD4I | CCNGG | 8 cut(s) | 516, 567, 660, 812, 1263, 1461, 1538, 1620 |
| StyI | CCWWGG | 3 cut(s) | 109, 145, 1275 |
| TaaI | ACNGT | 6 cut(s) | 64, 559, 1157, 1224, 1396, 1413 |
| TaiI | ACGT | 3 cut(s) | 102, 266, 948 |
| TaqI | TCGA | 4 cut(s) | 165, 417, 965, 1131 |
| TaqII | GACCGA | 2 cut(s) | 73, 1454 |
| TasI | AATT | 6 cut(s) | 270, 504, 511, 998, 1022, 1071 |
| TfiI | GAWTC | 3 cut(s) | 179, 367, 521 |
| Tru1I | TTAA | 2 cut(s) | 273, 1332 |
| Tru9I | TTAA | 2 cut(s) | 273, 1332 |
| TscAI | CASTG | 2 cut(s) | 1440, 1780 |
| TseFI | GTSAC | 5 cut(s) | 470, 571, 641, 763, 1267 |
| TseI | GCWGC | 6 cut(s) | 649, 743, 1255, 1382, 1483, 1797 |
| Tsp45I | GTSAC | 5 cut(s) | 470, 571, 641, 763, 1267 |
| TspDTI | ATGAA | 1 cut(s) | 506 |
| TspGWI | ACGGA | 1 cut(s) | 1539 |
| TspRI | CASTG | 2 cut(s) | 1440, 1780 |
| VpaK11BI | GGWCC | 8 cut(s) | 56, 243, 565, 797, 923, 1515, 1547, 1641 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 855, 1007 |
| XapI | RAATTY | 2 cut(s) | 998, 1022 |
| XceI | RCATGY | 1 cut(s) | 1249 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 668 |
| XhoI | CTCGAG | 1 cut(s) | 964 |
| XmiI | GTMKAC | 1 cut(s) | 417 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1296 |
| XspI | CTAG | 2 cut(s) | 974, 1064 |