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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 493 |
| AccB1I | GGYRCC | 2 cut(s) | 139, 613 |
| AccBSI | CCGCTC | 5 cut(s) | 130, 358, 676, 859, 925 |
| AccII | CGCG | 1 cut(s) | 378 |
| AcoI | YGGCCR | 7 cut(s) | 6, 16, 25, 91, 312, 867, 915 |
| AcyI | GRCGYC | 3 cut(s) | 140, 614, 761 |
| AfeI | AGCGCT | 1 cut(s) | 334 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 34, 229, 388, 468, 924 |
| AflIII | ACRYGT | 1 cut(s) | 747 |
| AjiI | CACGTC | 2 cut(s) | 456, 538 |
| AjnI | CCWGG | 2 cut(s) | 109, 371 |
| AluBI | AGCT | 6 cut(s) | 84, 341, 581, 631, 790, 907 |
| AluI | AGCT | 6 cut(s) | 84, 341, 581, 631, 790, 907 |
| Alw26I | GTCTC | 4 cut(s) | 200, 407, 815, 835 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 193 |
| Ama87I | CYCGRG | 1 cut(s) | 203 |
| Aor51HI | AGCGCT | 1 cut(s) | 334 |
| ApaI | GGGCCC | 1 cut(s) | 556 |
| ApeKI | GCWGC | 6 cut(s) | 244, 253, 335, 338, 346, 769 |
| AspLEI | GCGC | 6 cut(s) | 142, 217, 335, 378, 484, 616 |
| AspS9I | GGNCC | 7 cut(s) | 181, 303, 380, 459, 552, 553, 571 |
| AsuC2I | CCSGG | 2 cut(s) | 69, 469 |
| AsuHPI | GGTGA | 7 cut(s) | 208, 284, 457, 463, 556, 683, 893 |
| AvaI | CYCGRG | 1 cut(s) | 203 |
| AvaII | GGWCC | 2 cut(s) | 303, 459 |
| BaeGI | GKGCMC | 1 cut(s) | 556 |
| BalI | TGGCCA | 2 cut(s) | 869, 917 |
| BanI | GGYRCC | 2 cut(s) | 139, 613 |
| BanII | GRGCYC | 1 cut(s) | 556 |
| BauI | CACGAG | 1 cut(s) | 125 |
| BbvI | GCAGC | 6 cut(s) | 231, 240, 322, 350, 358, 781 |
| BccI | CCATC | 5 cut(s) | 272, 273, 662, 699, 926 |
| BceAI | ACGGC | 2 cut(s) | 605, 719 |
| BciT130I | CCWGG | 2 cut(s) | 111, 373 |
| BcnI | CCSGG | 2 cut(s) | 69, 469 |
| BcoDI | GTCTC | 4 cut(s) | 200, 407, 815, 835 |
| BfaI | CTAG | 1 cut(s) | 707 |
| BfmI | CTRYAG | 2 cut(s) | 336, 516 |
| BfoI | RGCGCY | 5 cut(s) | 143, 218, 336, 485, 617 |
| BfuAI | ACCTGC | 1 cut(s) | 493 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 24 |
| BlpI | GCTNAGC | 1 cut(s) | 218 |
| Bme1390I | CCNGG | 4 cut(s) | 69, 111, 373, 469 |
| Bme18I | GGWCC | 2 cut(s) | 303, 459 |
| BmeT110I | CYCGRG | 1 cut(s) | 203 |
| BmgBI | CACGTC | 2 cut(s) | 456, 538 |
| BmgT120I | GGNCC | 7 cut(s) | 181, 303, 380, 459, 552, 553, 571 |
| BmiI | GGNNCC | 9 cut(s) | 141, 234, 304, 305, 438, 473, 553, 554, 615 |
| BmrFI | CCNGG | 4 cut(s) | 69, 111, 373, 469 |
| BmsI | GCATC | 1 cut(s) | 351 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 620, 652 |
| BpmI | CTGGAG | 2 cut(s) | 506, 797 |
| Bpu10I | CCTNAGC | 1 cut(s) | 791 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 218 |
| BpuMI | CCSGG | 2 cut(s) | 69, 469 |
| BsaHI | GRCGYC | 3 cut(s) | 140, 614, 761 |
| BsaI | GGTCTC | 1 cut(s) | 815 |
| BsaJI | CCNNGG | 7 cut(s) | 109, 228, 428, 774, 805, 870, 898 |
| BsaWI | WCCGGW | 1 cut(s) | 235 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 34, 229, 388, 468, 924 |
| Bse118I | RCCGGY | 4 cut(s) | 286, 314, 406, 442 |
| Bse1I | ACTGG | 4 cut(s) | 122, 180, 223, 849 |
| BseBI | CCWGG | 2 cut(s) | 111, 373 |
| BseDI | CCNNGG | 7 cut(s) | 109, 228, 428, 774, 805, 870, 898 |
| BseGI | GGATG | 2 cut(s) | 283, 366 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 34, 229, 388, 468, 924 |
| BseMII | CTCAG | 1 cut(s) | 209 |
| BseNI | ACTGG | 4 cut(s) | 122, 180, 223, 849 |
| BseRI | GAGGAG | 2 cut(s) | 91, 449 |
| BseSI | GKGCMC | 1 cut(s) | 556 |
| BseXI | GCAGC | 6 cut(s) | 231, 240, 322, 350, 358, 781 |
| BseYI | CCCAGC | 2 cut(s) | 183, 341 |
| BsgI | GTGCAG | 3 cut(s) | 239, 314, 725 |
| Bsh1236I | CGCG | 1 cut(s) | 378 |
| BshNI | GGYRCC | 2 cut(s) | 139, 613 |
| BsiHKCI | CYCGRG | 1 cut(s) | 203 |
| BslFI | GGGAC | 3 cut(s) | 316, 750, 941 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 34, 229, 388, 468, 924 |
| BsmAI | GTCTC | 4 cut(s) | 200, 407, 815, 835 |
| BsmFI | GGGAC | 3 cut(s) | 316, 750, 941 |
| Bso31I | GGTCTC | 1 cut(s) | 815 |
| BsoBI | CYCGRG | 1 cut(s) | 203 |
| Bsp120I | GGGCCC | 1 cut(s) | 552 |
| Bsp1286I | GDGCHC | 1 cut(s) | 556 |
| Bsp143I | GATC | 1 cut(s) | 546 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 218 |
| BspCNI | CTCAG | 1 cut(s) | 210 |
| BspFNI | CGCG | 1 cut(s) | 378 |
| BspHI | TCATGA | 1 cut(s) | 660 |
| BspLI | GGNNCC | 9 cut(s) | 141, 234, 304, 305, 438, 473, 553, 554, 615 |
| BspMAI | CTGCAG | 2 cut(s) | 340, 520 |
| BspMI | ACCTGC | 1 cut(s) | 493 |
| BspT107I | GGYRCC | 2 cut(s) | 139, 613 |
| BspTNI | GGTCTC | 1 cut(s) | 815 |
| BsrBI | CCGCTC | 5 cut(s) | 130, 358, 676, 859, 925 |
| BsrFI | RCCGGY | 4 cut(s) | 286, 314, 406, 442 |
| BsrI | ACTGG | 4 cut(s) | 122, 180, 223, 849 |
| BssAI | RCCGGY | 4 cut(s) | 286, 314, 406, 442 |
| BssECI | CCNNGG | 7 cut(s) | 109, 228, 428, 774, 805, 870, 898 |
| BssMI | GATC | 1 cut(s) | 546 |
| BssNI | GRCGYC | 3 cut(s) | 140, 614, 761 |
| BssSI | CACGAG | 1 cut(s) | 125 |
| BssT1I | CCWWGG | 4 cut(s) | 428, 774, 805, 870 |
| Bst2BI | CACGAG | 1 cut(s) | 125 |
| Bst2UI | CCWGG | 2 cut(s) | 111, 373 |
| Bst4CI | ACNGT | 3 cut(s) | 418, 595, 902 |
| Bst6I | CTCTTC | 2 cut(s) | 519, 692 |
| BstACI | GRCGYC | 3 cut(s) | 140, 614, 761 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 650 |
| BstC8I | GCNNGC | 6 cut(s) | 297, 316, 366, 556, 618, 867 |
| BstDEI | CTNAG | 2 cut(s) | 218, 791 |
| BstDSI | CCRYGG | 1 cut(s) | 898 |
| BstF5I | GGATG | 2 cut(s) | 283, 366 |
| BstFNI | CGCG | 1 cut(s) | 378 |
| BstH2I | RGCGCY | 5 cut(s) | 143, 218, 336, 485, 617 |
| BstHHI | GCGC | 6 cut(s) | 142, 217, 335, 378, 484, 616 |
| BstKTI | GATC | 1 cut(s) | 549 |
| BstMAI | GTCTC | 4 cut(s) | 200, 407, 815, 835 |
| BstMBI | GATC | 1 cut(s) | 546 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 24, 90, 250, 253, 292, 355, 578, 650 |
| BstNI | CCWGG | 2 cut(s) | 111, 373 |
| BstNSI | RCATGY | 1 cut(s) | 751 |
| BstSCI | CCNGG | 4 cut(s) | 67, 109, 371, 467 |
| BstSFI | CTRYAG | 2 cut(s) | 336, 516 |
| BstSLI | GKGCMC | 1 cut(s) | 556 |
| BstUI | CGCG | 1 cut(s) | 378 |
| BstV1I | GCAGC | 6 cut(s) | 231, 240, 322, 350, 358, 781 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 117 |
| BtgI | CCRYGG | 1 cut(s) | 898 |
| BtrI | CACGTC | 2 cut(s) | 456, 538 |
| BtsCI | GGATG | 2 cut(s) | 283, 366 |
| BtsIMutI | CAGTG | 2 cut(s) | 115, 173 |
| BveI | ACCTGC | 1 cut(s) | 493 |
| Cac8I | GCNNGC | 6 cut(s) | 297, 316, 366, 556, 618, 867 |
| CaiI | CAGNNNCTG | 1 cut(s) | 193 |
| CciI | TCATGA | 1 cut(s) | 660 |
| CfoI | GCGC | 6 cut(s) | 142, 217, 335, 378, 484, 616 |
| Cfr10I | RCCGGY | 4 cut(s) | 286, 314, 406, 442 |
| Cfr13I | GGNCC | 7 cut(s) | 181, 303, 380, 459, 552, 553, 571 |
| CseI | GACGC | 2 cut(s) | 199, 750 |
| CviAII | CATG | 2 cut(s) | 661, 748 |
| DdeI | CTNAG | 2 cut(s) | 218, 791 |
| DinI | GGCGCC | 2 cut(s) | 141, 615 |
| DpnI | GATC | 1 cut(s) | 548 |
| DpnII | GATC | 1 cut(s) | 546 |
| EaeI | YGGCCR | 7 cut(s) | 6, 16, 25, 91, 312, 867, 915 |
| Eam1104I | CTCTTC | 2 cut(s) | 519, 692 |
| EarI | CTCTTC | 2 cut(s) | 519, 692 |
| EciI | GGCGGA | 3 cut(s) | 425, 842, 890 |
| Eco130I | CCWWGG | 4 cut(s) | 428, 774, 805, 870 |
| Eco24I | GRGCYC | 1 cut(s) | 556 |
| Eco31I | GGTCTC | 1 cut(s) | 815 |
| Eco47I | GGWCC | 2 cut(s) | 303, 459 |
| Eco47III | AGCGCT | 1 cut(s) | 334 |
| Eco88I | CYCGRG | 1 cut(s) | 203 |
| EcoO109I | RGGNCCY | 2 cut(s) | 303, 552 |
| EcoRII | CCWGG | 2 cut(s) | 109, 371 |
| EcoT14I | CCWWGG | 4 cut(s) | 428, 774, 805, 870 |
| EcoT38I | GRGCYC | 1 cut(s) | 556 |
| EgeI | GGCGCC | 2 cut(s) | 141, 615 |
| EheI | GGCGCC | 2 cut(s) | 141, 615 |
| ErhI | CCWWGG | 4 cut(s) | 428, 774, 805, 870 |
| FaeI | CATG | 2 cut(s) | 664, 751 |
| FaiI | YATR | 7 cut(s) | 154, 163, 651, 662, 697, 749, 888 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 758, 790 |
| FaqI | GGGAC | 3 cut(s) | 316, 750, 941 |
| FatI | CATG | 2 cut(s) | 660, 747 |
| FauI | CCCGC | 8 cut(s) | 123, 292, 311, 563, 625, 669, 727, 918 |
| FokI | GGATG | 2 cut(s) | 290, 373 |
| FriOI | GRGCYC | 1 cut(s) | 556 |
| FspBI | CTAG | 1 cut(s) | 707 |
| GlaI | GCGC | 6 cut(s) | 141, 216, 334, 377, 483, 615 |
| GsaI | CCCAGC | 2 cut(s) | 187, 345 |
| GsuI | CTGGAG | 2 cut(s) | 506, 797 |
| HaeII | RGCGCY | 5 cut(s) | 143, 218, 336, 485, 617 |
| HgaI | GACGC | 2 cut(s) | 199, 750 |
| HhaI | GCGC | 6 cut(s) | 142, 217, 335, 378, 484, 616 |
| Hin1I | GRCGYC | 3 cut(s) | 140, 614, 761 |
| Hin1II | CATG | 2 cut(s) | 664, 751 |
| Hin6I | GCGC | 6 cut(s) | 140, 215, 333, 376, 482, 614 |
| HinP1I | GCGC | 6 cut(s) | 140, 215, 333, 376, 482, 614 |
| HincII | GTYRAC | 1 cut(s) | 508 |
| HindII | GTYRAC | 1 cut(s) | 508 |
| HinfI | GANTC | 2 cut(s) | 509, 635 |
| HphI | GGTGA | 7 cut(s) | 208, 284, 457, 463, 556, 683, 893 |
| Hpy166II | GTNNAC | 4 cut(s) | 199, 459, 508, 898 |
| Hpy188I | TCNGA | 2 cut(s) | 159, 229 |
| Hpy188III | TCNNGA | 3 cut(s) | 125, 661, 814 |
| Hpy8I | GTNNAC | 4 cut(s) | 199, 459, 508, 898 |
| Hpy99I | CGWCG | 2 cut(s) | 501, 589 |
| HpyAV | CCTTC | 6 cut(s) | 74, 346, 388, 562, 829, 872 |
| HpyCH4III | ACNGT | 3 cut(s) | 418, 595, 902 |
| HpyCH4IV | ACGT | 4 cut(s) | 455, 496, 537, 912 |
| HpyCH4V | TGCA | 8 cut(s) | 54, 256, 295, 338, 403, 518, 644, 742 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 24, 90, 250, 253, 292, 355, 578, 650 |
| HpyF3I | CTNAG | 2 cut(s) | 218, 791 |
| HpySE526I | ACGT | 4 cut(s) | 455, 496, 537, 912 |
| Hsp92I | GRCGYC | 3 cut(s) | 140, 614, 761 |
| Hsp92II | CATG | 2 cut(s) | 664, 751 |
| HspAI | GCGC | 6 cut(s) | 140, 215, 333, 376, 482, 614 |
| KasI | GGCGCC | 2 cut(s) | 139, 613 |
| KflI | GGGWCCC | 1 cut(s) | 303 |
| KroI | GCCGGC | 1 cut(s) | 314 |
| KroNI | GCCGGC | 1 cut(s) | 316 |
| Kzo9I | GATC | 1 cut(s) | 546 |
| LmnI | GCTCC | 4 cut(s) | 355, 436, 586, 787 |
| Lsp1109I | GCAGC | 6 cut(s) | 231, 240, 322, 350, 358, 781 |
| LweI | GCATC | 1 cut(s) | 351 |
| MaeI | CTAG | 1 cut(s) | 707 |
| MaeII | ACGT | 4 cut(s) | 455, 496, 537, 912 |
| MaeIII | GTNAC | 3 cut(s) | 169, 451, 881 |
| MalI | GATC | 1 cut(s) | 548 |
| MbiI | CCGCTC | 5 cut(s) | 130, 358, 676, 859, 925 |
| MboI | GATC | 1 cut(s) | 546 |
| MboII | GAAGA | 3 cut(s) | 536, 577, 679 |
| MhlI | GDGCHC | 1 cut(s) | 556 |
| MlsI | TGGCCA | 2 cut(s) | 869, 917 |
| MluNI | TGGCCA | 2 cut(s) | 869, 917 |
| Mly113I | GGCGCC | 2 cut(s) | 140, 614 |
| MlyI | GAGTC | 2 cut(s) | 503, 629 |
| Mox20I | TGGCCA | 2 cut(s) | 869, 917 |
| MroNI | GCCGGC | 1 cut(s) | 314 |
| MscI | TGGCCA | 2 cut(s) | 869, 917 |
| MslI | CAYNNNNRTG | 1 cut(s) | 270 |
| Msp20I | TGGCCA | 2 cut(s) | 869, 917 |
| MspA1I | CMGCKG | 1 cut(s) | 341 |
| MspR9I | CCNGG | 4 cut(s) | 69, 111, 373, 469 |
| MvaI | CCWGG | 2 cut(s) | 111, 373 |
| MvnI | CGCG | 1 cut(s) | 378 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 24, 90, 250, 253, 292, 355, 578, 650 |
| NaeI | GCCGGC | 1 cut(s) | 316 |
| NarI | GGCGCC | 2 cut(s) | 140, 614 |
| NciI | CCSGG | 2 cut(s) | 69, 469 |
| NdeII | GATC | 1 cut(s) | 546 |
| NgoMIV | GCCGGC | 1 cut(s) | 314 |
| NlaIII | CATG | 2 cut(s) | 664, 751 |
| NlaIV | GGNNCC | 9 cut(s) | 141, 234, 304, 305, 438, 473, 553, 554, 615 |
| NmuCI | GTSAC | 2 cut(s) | 451, 881 |
| NspI | RCATGY | 1 cut(s) | 751 |
| PagI | TCATGA | 1 cut(s) | 660 |
| PciI | ACATGT | 1 cut(s) | 747 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 918 |
| PdiI | GCCGGC | 1 cut(s) | 316 |
| PleI | GAGTC | 2 cut(s) | 503, 629 |
| PluTI | GGCGCC | 2 cut(s) | 143, 617 |
| PpsI | GAGTC | 2 cut(s) | 503, 629 |
| PpuMI | RGGWCCY | 1 cut(s) | 303 |
| PscI | ACATGT | 1 cut(s) | 747 |
| Psp5II | RGGWCCY | 1 cut(s) | 303 |
| Psp6I | CCWGG | 2 cut(s) | 109, 371 |
| PspFI | CCCAGC | 2 cut(s) | 183, 341 |
| PspGI | CCWGG | 2 cut(s) | 109, 371 |
| PspN4I | GGNNCC | 9 cut(s) | 141, 234, 304, 305, 438, 473, 553, 554, 615 |
| PspOMI | GGGCCC | 1 cut(s) | 552 |
| PspPI | GGNCC | 7 cut(s) | 181, 303, 380, 459, 552, 553, 571 |
| PspPPI | RGGWCCY | 1 cut(s) | 303 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 641, 673 |
| PstI | CTGCAG | 2 cut(s) | 340, 520 |
| PstNI | CAGNNNCTG | 1 cut(s) | 193 |
| PvuII | CAGCTG | 1 cut(s) | 341 |
| RseI | CAYNNNNRTG | 1 cut(s) | 270 |
| Sau3AI | GATC | 1 cut(s) | 546 |
| Sau96I | GGNCC | 7 cut(s) | 181, 303, 380, 459, 552, 553, 571 |
| SchI | GAGTC | 2 cut(s) | 503, 629 |
| ScrFI | CCNGG | 4 cut(s) | 69, 111, 373, 469 |
| SduI | GDGCHC | 1 cut(s) | 556 |
| SfaNI | GCATC | 1 cut(s) | 351 |
| SfcI | CTRYAG | 2 cut(s) | 336, 516 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 24 |
| SfoI | GGCGCC | 2 cut(s) | 141, 615 |
| SgrAI | CRCCGGYG | 1 cut(s) | 442 |
| SinI | GGWCC | 2 cut(s) | 303, 459 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 270 |
| SspDI | GGCGCC | 2 cut(s) | 139, 613 |
| SspMI | CTAG | 1 cut(s) | 707 |
| StyD4I | CCNGG | 4 cut(s) | 67, 109, 371, 467 |
| StyI | CCWWGG | 4 cut(s) | 428, 774, 805, 870 |
| TaaI | ACNGT | 3 cut(s) | 418, 595, 902 |
| TaiI | ACGT | 4 cut(s) | 458, 499, 540, 915 |
| TaqI | TCGA | 4 cut(s) | 80, 587, 780, 921 |
| TauI | GCSGC | 6 cut(s) | 182, 381, 442, 656, 862, 865 |
| TscAI | CASTG | 2 cut(s) | 122, 180 |
| TseFI | GTSAC | 2 cut(s) | 451, 881 |
| TseI | GCWGC | 6 cut(s) | 244, 253, 335, 338, 346, 769 |
| Tsp45I | GTSAC | 2 cut(s) | 451, 881 |
| TspDTI | ATGAA | 1 cut(s) | 649 |
| TspGWI | ACGGA | 1 cut(s) | 573 |
| TspRI | CASTG | 2 cut(s) | 122, 180 |
| VpaK11BI | GGWCC | 2 cut(s) | 303, 459 |
| XceI | RCATGY | 1 cut(s) | 751 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 266 |
| XspI | CTAG | 1 cut(s) | 707 |