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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 197 |
| Acc36I | ACCTGC | 1 cut(s) | 189 |
| AccB1I | GGYRCC | 4 cut(s) | 80, 232, 770, 941 |
| AccII | CGCG | 5 cut(s) | 362, 593, 933, 935, 1040 |
| AclWI | GGATC | 1 cut(s) | 663 |
| AcsI | RAATTY | 1 cut(s) | 910 |
| AcyI | GRCGYC | 3 cut(s) | 81, 771, 827 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 249, 432, 541, 594, 1019 |
| AflII | CTTAAG | 1 cut(s) | 461 |
| AgsI | TTSAA | 4 cut(s) | 104, 652, 721, 796 |
| AjnI | CCWGG | 2 cut(s) | 783, 993 |
| AleI | CACNNNNGTG | 1 cut(s) | 947 |
| AluBI | AGCT | 9 cut(s) | 107, 113, 169, 239, 460, 493, 577, 628, 862 |
| AluI | AGCT | 9 cut(s) | 107, 113, 169, 239, 460, 493, 577, 628, 862 |
| Alw21I | GWGCWC | 1 cut(s) | 186 |
| Alw26I | GTCTC | 4 cut(s) | 359, 485, 627, 904 |
| AlwI | GGATC | 1 cut(s) | 663 |
| AoxI | GGCC | 2 cut(s) | 375, 699 |
| ApaI | GGGCCC | 1 cut(s) | 379 |
| ApeKI | GCWGC | 6 cut(s) | 61, 319, 422, 557, 1006, 1034 |
| ApoI | RAATTY | 1 cut(s) | 910 |
| AspLEI | GCGC | 6 cut(s) | 83, 198, 773, 809, 935, 1042 |
| AspS9I | GGNCC | 4 cut(s) | 201, 375, 376, 598 |
| AsuC2I | CCSGG | 1 cut(s) | 445 |
| AsuHPI | GGTGA | 7 cut(s) | 16, 37, 61, 274, 427, 961, 1034 |
| AvaII | GGWCC | 2 cut(s) | 201, 598 |
| BaeGI | GKGCMC | 1 cut(s) | 379 |
| BanI | GGYRCC | 4 cut(s) | 80, 232, 770, 941 |
| BanII | GRGCYC | 1 cut(s) | 379 |
| BauI | CACGAG | 1 cut(s) | 903 |
| Bbv12I | GWGCWC | 1 cut(s) | 186 |
| BbvI | GCAGC | 6 cut(s) | 48, 331, 434, 544, 1018, 1021 |
| BccI | CCATC | 6 cut(s) | 377, 508, 596, 713, 932, 1013 |
| BceAI | ACGGC | 2 cut(s) | 586, 829 |
| BciT130I | CCWGG | 2 cut(s) | 785, 995 |
| BclI | TGATCA | 1 cut(s) | 121 |
| BcnI | CCSGG | 1 cut(s) | 445 |
| BcoDI | GTCTC | 4 cut(s) | 359, 485, 627, 904 |
| BfmI | CTRYAG | 1 cut(s) | 420 |
| BfoI | RGCGCY | 3 cut(s) | 84, 774, 810 |
| BfrI | CTTAAG | 1 cut(s) | 461 |
| BfuAI | ACCTGC | 1 cut(s) | 189 |
| BlpI | GCTNAGC | 1 cut(s) | 840 |
| Bme1390I | CCNGG | 3 cut(s) | 445, 785, 995 |
| Bme18I | GGWCC | 2 cut(s) | 201, 598 |
| BmgT120I | GGNCC | 4 cut(s) | 201, 375, 376, 598 |
| BmrFI | CCNGG | 3 cut(s) | 445, 785, 995 |
| BmrI | ACTGGG | 2 cut(s) | 38, 826 |
| BmsI | GCATC | 4 cut(s) | 48, 322, 521, 553 |
| BmuI | ACTGGG | 2 cut(s) | 38, 826 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 133, 165, 846, 878 |
| BpmI | CTGGAG | 3 cut(s) | 129, 467, 650 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 840 |
| BpuMI | CCSGG | 1 cut(s) | 445 |
| BsaHI | GRCGYC | 3 cut(s) | 81, 771, 827 |
| BsaI | GGTCTC | 2 cut(s) | 359, 485 |
| BsaJI | CCNNGG | 5 cut(s) | 411, 540, 568, 762, 945 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 249, 432, 541, 594, 1019 |
| Bse118I | RCCGGY | 3 cut(s) | 134, 381, 1012 |
| Bse1I | ACTGG | 4 cut(s) | 31, 44, 95, 832 |
| Bse3DI | GCAATG | 1 cut(s) | 243 |
| BseBI | CCWGG | 2 cut(s) | 785, 995 |
| BseDI | CCNNGG | 5 cut(s) | 411, 540, 568, 762, 945 |
| BseGI | GGATG | 2 cut(s) | 943, 1024 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 249, 432, 541, 594, 1019 |
| BseMI | GCAATG | 1 cut(s) | 243 |
| BseMII | CTCAG | 3 cut(s) | 441, 638, 831 |
| BseNI | ACTGG | 4 cut(s) | 31, 44, 95, 832 |
| BseRI | GAGGAG | 4 cut(s) | 482, 695, 700, 867 |
| BseSI | GKGCMC | 1 cut(s) | 379 |
| BseXI | GCAGC | 6 cut(s) | 48, 331, 434, 544, 1018, 1021 |
| BseYI | CCCAGC | 1 cut(s) | 493 |
| BsgI | GTGCAG | 2 cut(s) | 47, 147 |
| Bsh1236I | CGCG | 5 cut(s) | 362, 593, 933, 935, 1040 |
| BshFI | GGCC | 2 cut(s) | 377, 701 |
| BshNI | GGYRCC | 4 cut(s) | 80, 232, 770, 941 |
| BsiHKAI | GWGCWC | 1 cut(s) | 186 |
| BsiSI | CCGG | 4 cut(s) | 135, 382, 445, 1013 |
| BslFI | GGGAC | 4 cut(s) | 187, 208, 611, 814 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 249, 432, 541, 594, 1019 |
| BsmAI | GTCTC | 4 cut(s) | 359, 485, 627, 904 |
| BsmFI | GGGAC | 4 cut(s) | 187, 208, 611, 814 |
| BsnI | GGCC | 2 cut(s) | 377, 701 |
| Bso31I | GGTCTC | 2 cut(s) | 359, 485 |
| Bsp120I | GGGCCC | 1 cut(s) | 375 |
| Bsp1286I | GDGCHC | 2 cut(s) | 186, 379 |
| Bsp143I | GATC | 3 cut(s) | 121, 613, 655 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 840 |
| Bsp19I | CCATGG | 1 cut(s) | 945 |
| Bsp68I | TCGCGA | 1 cut(s) | 593 |
| BspANI | GGCC | 2 cut(s) | 377, 701 |
| BspCNI | CTCAG | 3 cut(s) | 442, 637, 832 |
| BspFNI | CGCG | 5 cut(s) | 362, 593, 933, 935, 1040 |
| BspMAI | CTGCAG | 1 cut(s) | 424 |
| BspMI | ACCTGC | 1 cut(s) | 189 |
| BspPI | GGATC | 1 cut(s) | 663 |
| BspT107I | GGYRCC | 4 cut(s) | 80, 232, 770, 941 |
| BspTI | CTTAAG | 1 cut(s) | 461 |
| BspTNI | GGTCTC | 2 cut(s) | 359, 485 |
| BsrDI | GCAATG | 1 cut(s) | 243 |
| BsrFI | RCCGGY | 3 cut(s) | 134, 381, 1012 |
| BsrI | ACTGG | 4 cut(s) | 31, 44, 95, 832 |
| BssAI | RCCGGY | 3 cut(s) | 134, 381, 1012 |
| BssECI | CCNNGG | 5 cut(s) | 411, 540, 568, 762, 945 |
| BssMI | GATC | 3 cut(s) | 121, 613, 655 |
| BssNI | GRCGYC | 3 cut(s) | 81, 771, 827 |
| BssSI | CACGAG | 1 cut(s) | 903 |
| BssT1I | CCWWGG | 4 cut(s) | 411, 540, 762, 945 |
| Bst2BI | CACGAG | 1 cut(s) | 903 |
| Bst2UI | CCWGG | 2 cut(s) | 785, 995 |
| Bst4CI | ACNGT | 3 cut(s) | 89, 128, 792 |
| Bst6I | CTCTTC | 1 cut(s) | 672 |
| BstACI | GRCGYC | 3 cut(s) | 81, 771, 827 |
| BstAFI | CTTAAG | 1 cut(s) | 461 |
| BstDEI | CTNAG | 4 cut(s) | 450, 624, 840, 956 |
| BstDSI | CCRYGG | 2 cut(s) | 568, 945 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 539 |
| BstF5I | GGATG | 2 cut(s) | 943, 1024 |
| BstFNI | CGCG | 5 cut(s) | 362, 593, 933, 935, 1040 |
| BstH2I | RGCGCY | 3 cut(s) | 84, 774, 810 |
| BstHHI | GCGC | 6 cut(s) | 83, 198, 773, 809, 935, 1042 |
| BstKTI | GATC | 3 cut(s) | 124, 616, 658 |
| BstMAI | GTCTC | 4 cut(s) | 359, 485, 627, 904 |
| BstMBI | GATC | 3 cut(s) | 121, 613, 655 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 245, 563, 764, 939 |
| BstNI | CCWGG | 2 cut(s) | 785, 995 |
| BstNSI | RCATGY | 1 cut(s) | 281 |
| BstSCI | CCNGG | 3 cut(s) | 443, 783, 993 |
| BstSFI | CTRYAG | 1 cut(s) | 420 |
| BstSLI | GKGCMC | 1 cut(s) | 379 |
| BstUI | CGCG | 5 cut(s) | 362, 593, 933, 935, 1040 |
| BstV1I | GCAGC | 6 cut(s) | 48, 331, 434, 544, 1018, 1021 |
| BsuRI | GGCC | 2 cut(s) | 377, 701 |
| BtgI | CCRYGG | 2 cut(s) | 568, 945 |
| BtgZI | GCGATG | 3 cut(s) | 544, 574, 761 |
| BtsCI | GGATG | 2 cut(s) | 943, 1024 |
| BtsI | GCAGTG | 2 cut(s) | 124, 774 |
| BtsIMutI | CAGTG | 4 cut(s) | 51, 124, 133, 774 |
| BtuMI | TCGCGA | 1 cut(s) | 593 |
| BveI | ACCTGC | 1 cut(s) | 189 |
| CfoI | GCGC | 6 cut(s) | 83, 198, 773, 809, 935, 1042 |
| Cfr10I | RCCGGY | 3 cut(s) | 134, 381, 1012 |
| Cfr13I | GGNCC | 4 cut(s) | 201, 375, 376, 598 |
| CseI | GACGC | 3 cut(s) | 368, 563, 816 |
| CspCI | CAANNNNNGTGG | 3 cut(s) | 27, 35, 62 |
| CviAII | CATG | 3 cut(s) | 278, 709, 946 |
| DdeI | CTNAG | 4 cut(s) | 450, 624, 840, 956 |
| DinI | GGCGCC | 2 cut(s) | 82, 772 |
| DpnI | GATC | 3 cut(s) | 123, 615, 657 |
| DpnII | GATC | 3 cut(s) | 121, 613, 655 |
| Eam1104I | CTCTTC | 1 cut(s) | 672 |
| EarI | CTCTTC | 1 cut(s) | 672 |
| EciI | GGCGGA | 1 cut(s) | 622 |
| Eco130I | CCWWGG | 4 cut(s) | 411, 540, 762, 945 |
| Eco24I | GRGCYC | 1 cut(s) | 379 |
| Eco31I | GGTCTC | 2 cut(s) | 359, 485 |
| Eco47I | GGWCC | 2 cut(s) | 201, 598 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 539 |
| EcoO109I | RGGNCCY | 3 cut(s) | 201, 375, 598 |
| EcoRII | CCWGG | 2 cut(s) | 783, 993 |
| EcoT14I | CCWWGG | 4 cut(s) | 411, 540, 762, 945 |
| EcoT38I | GRGCYC | 1 cut(s) | 379 |
| EgeI | GGCGCC | 2 cut(s) | 82, 772 |
| EheI | GGCGCC | 2 cut(s) | 82, 772 |
| ErhI | CCWWGG | 4 cut(s) | 411, 540, 762, 945 |
| FaeI | CATG | 3 cut(s) | 281, 712, 949 |
| FaiI | YATR | 6 cut(s) | 279, 296, 641, 710, 917, 947 |
| FaqI | GGGAC | 4 cut(s) | 187, 208, 611, 814 |
| FatI | CATG | 3 cut(s) | 277, 708, 945 |
| FauI | CCCGC | 2 cut(s) | 131, 938 |
| FbaI | TGATCA | 1 cut(s) | 121 |
| FokI | GGATG | 2 cut(s) | 950, 1031 |
| FriOI | GRGCYC | 1 cut(s) | 379 |
| FspI | TGCGCA | 1 cut(s) | 197 |
| GlaI | GCGC | 6 cut(s) | 82, 197, 772, 808, 934, 1041 |
| GsaI | CCCAGC | 1 cut(s) | 497 |
| GsuI | CTGGAG | 3 cut(s) | 129, 467, 650 |
| HaeII | RGCGCY | 3 cut(s) | 84, 774, 810 |
| HaeIII | GGCC | 2 cut(s) | 377, 701 |
| HapII | CCGG | 4 cut(s) | 135, 382, 445, 1013 |
| HgaI | GACGC | 3 cut(s) | 368, 563, 816 |
| HhaI | GCGC | 6 cut(s) | 83, 198, 773, 809, 935, 1042 |
| Hin1I | GRCGYC | 3 cut(s) | 81, 771, 827 |
| Hin1II | CATG | 3 cut(s) | 281, 712, 949 |
| Hin6I | GCGC | 6 cut(s) | 81, 196, 771, 807, 933, 1040 |
| HinP1I | GCGC | 6 cut(s) | 81, 196, 771, 807, 933, 1040 |
| HinfI | GANTC | 3 cut(s) | 7, 688, 874 |
| HpaII | CCGG | 4 cut(s) | 135, 382, 445, 1013 |
| HphI | GGTGA | 7 cut(s) | 16, 37, 61, 274, 427, 961, 1034 |
| Hpy188I | TCNGA | 3 cut(s) | 153, 895, 979 |
| Hpy188III | TCNNGA | 2 cut(s) | 484, 592 |
| Hpy99I | CGWCG | 1 cut(s) | 89 |
| HpyAV | CCTTC | 6 cut(s) | 202, 223, 385, 646, 748, 796 |
| HpyCH4III | ACNGT | 3 cut(s) | 89, 128, 792 |
| HpyCH4IV | ACGT | 1 cut(s) | 522 |
| HpyCH4V | TGCA | 5 cut(s) | 38, 64, 164, 422, 908 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 245, 563, 764, 939 |
| HpyF3I | CTNAG | 4 cut(s) | 450, 624, 840, 956 |
| HpySE526I | ACGT | 1 cut(s) | 522 |
| Hsp92I | GRCGYC | 3 cut(s) | 81, 771, 827 |
| Hsp92II | CATG | 3 cut(s) | 281, 712, 949 |
| HspAI | GCGC | 6 cut(s) | 81, 196, 771, 807, 933, 1040 |
| KasI | GGCGCC | 2 cut(s) | 80, 770 |
| KroI | GCCGGC | 1 cut(s) | 134 |
| KroNI | GCCGGC | 1 cut(s) | 136 |
| Ksp22I | TGATCA | 1 cut(s) | 121 |
| Kzo9I | GATC | 3 cut(s) | 121, 613, 655 |
| LmnI | GCTCC | 9 cut(s) | 110, 141, 154, 256, 409, 436, 490, 631, 867 |
| Lsp1109I | GCAGC | 6 cut(s) | 48, 331, 434, 544, 1018, 1021 |
| LweI | GCATC | 4 cut(s) | 48, 322, 521, 553 |
| MaeII | ACGT | 1 cut(s) | 522 |
| MaeIII | GTNAC | 4 cut(s) | 280, 415, 551, 949 |
| MalI | GATC | 3 cut(s) | 123, 615, 657 |
| MboI | GATC | 3 cut(s) | 121, 613, 655 |
| MboII | GAAGA | 2 cut(s) | 689, 1037 |
| MhlI | GDGCHC | 2 cut(s) | 186, 379 |
| MluCI | AATT | 1 cut(s) | 910 |
| Mly113I | GGCGCC | 2 cut(s) | 81, 771 |
| MlyI | GAGTC | 2 cut(s) | 697, 868 |
| MmeI | TCCRAC | 2 cut(s) | 176, 234 |
| MroNI | GCCGGC | 1 cut(s) | 134 |
| MseI | TTAA | 1 cut(s) | 462 |
| MslI | CAYNNNNRTG | 1 cut(s) | 947 |
| MspA1I | CMGCKG | 4 cut(s) | 169, 287, 322, 628 |
| MspCI | CTTAAG | 1 cut(s) | 461 |
| MspI | CCGG | 4 cut(s) | 135, 382, 445, 1013 |
| MspR9I | CCNGG | 3 cut(s) | 445, 785, 995 |
| MvaI | CCWGG | 2 cut(s) | 785, 995 |
| MvnI | CGCG | 5 cut(s) | 362, 593, 933, 935, 1040 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 245, 563, 764, 939 |
| NaeI | GCCGGC | 1 cut(s) | 136 |
| NarI | GGCGCC | 2 cut(s) | 81, 771 |
| NciI | CCSGG | 1 cut(s) | 445 |
| NcoI | CCATGG | 1 cut(s) | 945 |
| NdeII | GATC | 3 cut(s) | 121, 613, 655 |
| NgoMIV | GCCGGC | 1 cut(s) | 134 |
| NlaIII | CATG | 3 cut(s) | 281, 712, 949 |
| NmeAIII | GCCGAG | 1 cut(s) | 57 |
| NmuCI | GTSAC | 4 cut(s) | 280, 415, 551, 949 |
| NruI | TCGCGA | 1 cut(s) | 593 |
| NsbI | TGCGCA | 1 cut(s) | 197 |
| NspI | RCATGY | 1 cut(s) | 281 |
| OliI | CACNNNNGTG | 1 cut(s) | 947 |
| PdiI | GCCGGC | 1 cut(s) | 136 |
| PfeI | GAWTC | 1 cut(s) | 7 |
| PleI | GAGTC | 2 cut(s) | 696, 868 |
| PluTI | GGCGCC | 2 cut(s) | 84, 774 |
| PpsI | GAGTC | 2 cut(s) | 696, 868 |
| PpuMI | RGGWCCY | 2 cut(s) | 201, 598 |
| Psp5II | RGGWCCY | 2 cut(s) | 201, 598 |
| Psp6I | CCWGG | 2 cut(s) | 783, 993 |
| PspFI | CCCAGC | 1 cut(s) | 493 |
| PspGI | CCWGG | 2 cut(s) | 783, 993 |
| PspOMI | GGGCCC | 1 cut(s) | 375 |
| PspPI | GGNCC | 4 cut(s) | 201, 375, 376, 598 |
| PspPPI | RGGWCCY | 2 cut(s) | 201, 598 |
| PstI | CTGCAG | 1 cut(s) | 424 |
| PvuII | CAGCTG | 2 cut(s) | 169, 628 |
| RruI | TCGCGA | 1 cut(s) | 593 |
| RseI | CAYNNNNRTG | 1 cut(s) | 947 |
| SaqAI | TTAA | 1 cut(s) | 462 |
| Sau3AI | GATC | 3 cut(s) | 121, 613, 655 |
| Sau96I | GGNCC | 4 cut(s) | 201, 375, 376, 598 |
| SchI | GAGTC | 2 cut(s) | 697, 868 |
| ScrFI | CCNGG | 3 cut(s) | 445, 785, 995 |
| SduI | GDGCHC | 2 cut(s) | 186, 379 |
| SfaNI | GCATC | 4 cut(s) | 48, 322, 521, 553 |
| SfcI | CTRYAG | 1 cut(s) | 420 |
| SfoI | GGCGCC | 2 cut(s) | 82, 772 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1012 |
| SinI | GGWCC | 2 cut(s) | 201, 598 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 947 |
| SmlI | CTYRAG | 1 cut(s) | 461 |
| SmoI | CTYRAG | 1 cut(s) | 461 |
| Sse9I | AATT | 1 cut(s) | 910 |
| SspDI | GGCGCC | 2 cut(s) | 80, 770 |
| StyD4I | CCNGG | 3 cut(s) | 443, 783, 993 |
| StyI | CCWWGG | 4 cut(s) | 411, 540, 762, 945 |
| TaaI | ACNGT | 3 cut(s) | 89, 128, 792 |
| TaiI | ACGT | 1 cut(s) | 525 |
| TaqI | TCGA | 2 cut(s) | 56, 999 |
| TasI | AATT | 1 cut(s) | 910 |
| TauI | GCSGC | 9 cut(s) | 262, 325, 428, 668, 704, 923, 993, 1012, 1040 |
| TfiI | GAWTC | 1 cut(s) | 7 |
| Tru1I | TTAA | 1 cut(s) | 462 |
| Tru9I | TTAA | 1 cut(s) | 462 |
| TscAI | CASTG | 4 cut(s) | 51, 124, 133, 781 |
| TseFI | GTSAC | 4 cut(s) | 280, 415, 551, 949 |
| TseI | GCWGC | 6 cut(s) | 61, 319, 422, 557, 1006, 1034 |
| Tsp45I | GTSAC | 4 cut(s) | 280, 415, 551, 949 |
| TspDTI | ATGAA | 1 cut(s) | 767 |
| TspRI | CASTG | 4 cut(s) | 51, 124, 133, 781 |
| Vha464I | CTTAAG | 1 cut(s) | 461 |
| VpaK11BI | GGWCC | 2 cut(s) | 201, 598 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 539 |
| XapI | RAATTY | 1 cut(s) | 910 |
| XceI | RCATGY | 1 cut(s) | 281 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 250, 511, 781 |