Putative gypsy type transposon
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 4 cut(s) | 230, 418, 1060, 1171 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 159, 483, 1057 |
| AccBSI | CCGCTC | 2 cut(s) | 1720, 1741 |
| AccI | GTMKAC | 1 cut(s) | 1268 |
| AccII | CGCG | 8 cut(s) | 62, 374, 819, 913, 978, 1177, 1306, 1441 |
| AccIII | TCCGGA | 2 cut(s) | 38, 178 |
| AclI | AACGTT | 1 cut(s) | 1707 |
| AclWI | GGATC | 4 cut(s) | 49, 427, 1788, 1807 |
| AcoI | YGGCCR | 4 cut(s) | 3, 674, 1788, 1905 |
| AcsI | RAATTY | 2 cut(s) | 34, 73 |
| AcuI | CTGAAG | 5 cut(s) | 66, 524, 1298, 1486, 1802 |
| AcyI | GRCGYC | 2 cut(s) | 1061, 1556 |
| AfaI | GTAC | 7 cut(s) | 555, 578, 671, 791, 1303, 1520, 1943 |
| AflIII | ACRYGT | 3 cut(s) | 480, 911, 1764 |
| AgsI | TTSAA | 2 cut(s) | 351, 1919 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 664 |
| AjiI | CACGTC | 1 cut(s) | 1429 |
| AjnI | CCWGG | 4 cut(s) | 435, 858, 996, 1569 |
| AluBI | AGCT | 9 cut(s) | 319, 640, 889, 899, 1424, 1585, 1639, 1702, 1753 |
| AluI | AGCT | 9 cut(s) | 319, 640, 889, 899, 1424, 1585, 1639, 1702, 1753 |
| Alw21I | GWGCWC | 2 cut(s) | 381, 1587 |
| Alw26I | GTCTC | 2 cut(s) | 875, 917 |
| Alw44I | GTGCAC | 1 cut(s) | 377 |
| AlwI | GGATC | 4 cut(s) | 49, 427, 1788, 1807 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 436, 1057, 1570 |
| Ama87I | CYCGRG | 2 cut(s) | 305, 1412 |
| Aor13HI | TCCGGA | 2 cut(s) | 38, 178 |
| ApaLI | GTGCAC | 1 cut(s) | 377 |
| ApeKI | GCWGC | 8 cut(s) | 145, 319, 889, 1286, 1292, 1774, 1832, 1901 |
| ApoI | RAATTY | 2 cut(s) | 34, 73 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1312, 1344 |
| AspLEI | GCGC | 9 cut(s) | 62, 588, 634, 980, 1030, 1063, 1192, 1230, 1441 |
| AsuC2I | CCSGG | 7 cut(s) | 306, 307, 590, 678, 880, 1018, 1372 |
| AsuHPI | GGTGA | 4 cut(s) | 325, 1133, 1360, 1877 |
| AsuNHI | GCTAGC | 1 cut(s) | 944 |
| AvaI | CYCGRG | 2 cut(s) | 305, 1412 |
| AvaII | GGWCC | 6 cut(s) | 176, 536, 973, 1149, 1308, 1476 |
| AxyI | CCTNAGG | 1 cut(s) | 653 |
| BaeGI | GKGCMC | 4 cut(s) | 381, 423, 476, 1980 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BanI | GGYRCC | 4 cut(s) | 230, 418, 1060, 1171 |
| BanII | GRGCYC | 3 cut(s) | 1005, 1070, 1587 |
| BauI | CACGAG | 2 cut(s) | 380, 801 |
| Bbv12I | GWGCWC | 2 cut(s) | 381, 1587 |
| BbvCI | CCTCAGC | 1 cut(s) | 1887 |
| BbvI | GCAGC | 8 cut(s) | 132, 306, 876, 1273, 1279, 1761, 1819, 1888 |
| BccI | CCATC | 1 cut(s) | 221 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 1957 |
| BciT130I | CCWGG | 4 cut(s) | 437, 860, 998, 1571 |
| BciVI | GTATCC | 1 cut(s) | 193 |
| BcnI | CCSGG | 7 cut(s) | 306, 307, 590, 678, 880, 1018, 1372 |
| BcoDI | GTCTC | 2 cut(s) | 875, 917 |
| BfaI | CTAG | 5 cut(s) | 131, 893, 945, 1859, 1981 |
| BfmI | CTRYAG | 4 cut(s) | 146, 428, 1434, 1607 |
| BfoI | RGCGCY | 3 cut(s) | 589, 635, 1064 |
| BfuI | GTATCC | 1 cut(s) | 193 |
| Bme18I | GGWCC | 6 cut(s) | 176, 536, 973, 1149, 1308, 1476 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 664 |
| BmeT110I | CYCGRG | 2 cut(s) | 305, 1412 |
| BmgBI | CACGTC | 1 cut(s) | 1429 |
| BmsI | GCATC | 5 cut(s) | 100, 462, 489, 837, 1678 |
| BmtI | GCTAGC | 1 cut(s) | 948 |
| BoxI | GACNNNNGTC | 2 cut(s) | 867, 914 |
| BpmI | CTGGAG | 4 cut(s) | 1019, 1317, 1404, 1775 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1586, 1794, 1887 |
| BpuMI | CCSGG | 7 cut(s) | 306, 307, 590, 678, 880, 1018, 1372 |
| BsaAI | YACGTR | 1 cut(s) | 580 |
| BsaHI | GRCGYC | 2 cut(s) | 1061, 1556 |
| BsaWI | WCCGGW | 3 cut(s) | 38, 178, 297 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 728, 758, 992, 1022 |
| Bse118I | RCCGGY | 2 cut(s) | 279, 1151 |
| Bse1I | ACTGG | 4 cut(s) | 102, 576, 677, 1377 |
| Bse21I | CCTNAGG | 1 cut(s) | 653 |
| Bse3DI | GCAATG | 2 cut(s) | 690, 975 |
| BseAI | TCCGGA | 2 cut(s) | 38, 178 |
| BseBI | CCWGG | 4 cut(s) | 437, 860, 998, 1571 |
| BseGI | GGATG | 3 cut(s) | 91, 232, 264 |
| BseMI | GCAATG | 2 cut(s) | 690, 975 |
| BseMII | CTCAG | 4 cut(s) | 195, 628, 1600, 1878 |
| BseNI | ACTGG | 4 cut(s) | 102, 576, 677, 1377 |
| BseRI | GAGGAG | 1 cut(s) | 1398 |
| BseSI | GKGCMC | 4 cut(s) | 381, 423, 476, 1980 |
| BseX3I | CGGCCG | 1 cut(s) | 1905 |
| BseXI | GCAGC | 8 cut(s) | 132, 306, 876, 1273, 1279, 1761, 1819, 1888 |
| BseYI | CCCAGC | 2 cut(s) | 770, 1444 |
| BsgI | GTGCAG | 1 cut(s) | 126 |
| Bsh1236I | CGCG | 8 cut(s) | 62, 374, 819, 913, 978, 1177, 1306, 1441 |
| Bsh1285I | CGRYCG | 2 cut(s) | 543, 1908 |
| BshNI | GGYRCC | 4 cut(s) | 230, 418, 1060, 1171 |
| BsiEI | CGRYCG | 2 cut(s) | 543, 1908 |
| BsiHKAI | GWGCWC | 2 cut(s) | 381, 1587 |
| BsiHKCI | CYCGRG | 2 cut(s) | 305, 1412 |
| BslFI | GGGAC | 5 cut(s) | 176, 671, 1162, 1628, 1753 |
| BsmAI | GTCTC | 2 cut(s) | 875, 917 |
| BsmBI | CGTCTC | 1 cut(s) | 875 |
| BsmFI | GGGAC | 5 cut(s) | 176, 671, 1162, 1628, 1753 |
| BsoBI | CYCGRG | 2 cut(s) | 305, 1412 |
| Bsp1286I | GDGCHC | 7 cut(s) | 381, 423, 476, 1005, 1070, 1587, 1980 |
| Bsp13I | TCCGGA | 2 cut(s) | 38, 178 |
| Bsp143I | GATC | 6 cut(s) | 41, 432, 642, 1780, 1812, 1848 |
| BspCNI | CTCAG | 4 cut(s) | 196, 627, 1599, 1879 |
| BspEI | TCCGGA | 2 cut(s) | 38, 178 |
| BspFNI | CGCG | 8 cut(s) | 62, 374, 819, 913, 978, 1177, 1306, 1441 |
| BspHI | TCATGA | 1 cut(s) | 1537 |
| BspMAI | CTGCAG | 1 cut(s) | 150 |
| BspOI | GCTAGC | 1 cut(s) | 948 |
| BspPI | GGATC | 4 cut(s) | 49, 427, 1788, 1807 |
| BspT107I | GGYRCC | 4 cut(s) | 230, 418, 1060, 1171 |
| BsrBI | CCGCTC | 2 cut(s) | 1720, 1741 |
| BsrDI | GCAATG | 2 cut(s) | 690, 975 |
| BsrFI | RCCGGY | 2 cut(s) | 279, 1151 |
| BsrI | ACTGG | 4 cut(s) | 102, 576, 677, 1377 |
| BssAI | RCCGGY | 2 cut(s) | 279, 1151 |
| BssMI | GATC | 6 cut(s) | 41, 432, 642, 1780, 1812, 1848 |
| BssNI | GRCGYC | 2 cut(s) | 1061, 1556 |
| BssSI | CACGAG | 2 cut(s) | 380, 801 |
| BssT1I | CCWWGG | 1 cut(s) | 625 |
| Bst2BI | CACGAG | 2 cut(s) | 380, 801 |
| Bst2UI | CCWGG | 4 cut(s) | 437, 860, 998, 1571 |
| Bst4CI | ACNGT | 3 cut(s) | 334, 544, 1138 |
| Bst6I | CTCTTC | 3 cut(s) | 804, 1344, 1350 |
| BstACI | GRCGYC | 2 cut(s) | 1061, 1556 |
| BstBAI | YACGTR | 1 cut(s) | 580 |
| BstDEI | CTNAG | 6 cut(s) | 204, 614, 653, 1586, 1794, 1887 |
| BstDSI | CCRYGG | 7 cut(s) | 158, 372, 543, 696, 1083, 1175, 1693 |
| BstEII | GGTNACC | 1 cut(s) | 1366 |
| BstF5I | GGATG | 3 cut(s) | 91, 232, 264 |
| BstFNI | CGCG | 8 cut(s) | 62, 374, 819, 913, 978, 1177, 1306, 1441 |
| BstH2I | RGCGCY | 3 cut(s) | 589, 635, 1064 |
| BstHHI | GCGC | 9 cut(s) | 62, 588, 634, 980, 1030, 1063, 1192, 1230, 1441 |
| BstKTI | GATC | 6 cut(s) | 44, 435, 645, 1783, 1815, 1851 |
| BstMAI | GTCTC | 2 cut(s) | 875, 917 |
| BstMBI | GATC | 6 cut(s) | 41, 432, 642, 1780, 1812, 1848 |
| BstMCI | CGRYCG | 2 cut(s) | 543, 1908 |
| BstNI | CCWGG | 4 cut(s) | 437, 860, 998, 1571 |
| BstNSI | RCATGY | 2 cut(s) | 484, 1768 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 867, 914 |
| BstPI | GGTNACC | 1 cut(s) | 1366 |
| BstSFI | CTRYAG | 4 cut(s) | 146, 428, 1434, 1607 |
| BstSLI | GKGCMC | 4 cut(s) | 381, 423, 476, 1980 |
| BstUI | CGCG | 8 cut(s) | 62, 374, 819, 913, 978, 1177, 1306, 1441 |
| BstV1I | GCAGC | 8 cut(s) | 132, 306, 876, 1273, 1279, 1761, 1819, 1888 |
| BstX2I | RGATCY | 3 cut(s) | 41, 432, 1812 |
| BstYI | RGATCY | 3 cut(s) | 41, 432, 1812 |
| BstZI | CGGCCG | 1 cut(s) | 1905 |
| Bsu36I | CCTNAGG | 1 cut(s) | 653 |
| BsuI | GTATCC | 1 cut(s) | 193 |
| BtgI | CCRYGG | 7 cut(s) | 158, 372, 543, 696, 1083, 1175, 1693 |
| BtgZI | GCGATG | 1 cut(s) | 439 |
| BtrI | CACGTC | 1 cut(s) | 1429 |
| BtsCI | GGATG | 3 cut(s) | 91, 232, 264 |
| BtsI | GCAGTG | 1 cut(s) | 34 |
| BtsIMutI | CAGTG | 4 cut(s) | 34, 109, 1384, 1952 |
| CaiI | CAGNNNCTG | 3 cut(s) | 436, 1057, 1570 |
| CciI | TCATGA | 1 cut(s) | 1537 |
| CciNI | GCGGCCGC | 1 cut(s) | 1905 |
| CfoI | GCGC | 9 cut(s) | 62, 588, 634, 980, 1030, 1063, 1192, 1230, 1441 |
| Cfr10I | RCCGGY | 2 cut(s) | 279, 1151 |
| Cfr42I | CCGCGG | 2 cut(s) | 375, 1178 |
| Cfr9I | CCCGGG | 1 cut(s) | 305 |
| CseI | GACGC | 6 cut(s) | 311, 919, 962, 1063, 1545, 1665 |
| Csp6I | GTAC | 7 cut(s) | 554, 577, 670, 790, 1302, 1519, 1942 |
| CviAII | CATG | 5 cut(s) | 213, 481, 1006, 1538, 1765 |
| CviQI | GTAC | 7 cut(s) | 554, 577, 670, 790, 1302, 1519, 1942 |
| DdeI | CTNAG | 6 cut(s) | 204, 614, 653, 1586, 1794, 1887 |
| DinI | GGCGCC | 1 cut(s) | 1062 |
| DpnI | GATC | 6 cut(s) | 43, 434, 644, 1782, 1814, 1850 |
| DpnII | GATC | 6 cut(s) | 41, 432, 642, 1780, 1812, 1848 |
| DriI | GACNNNNNGTC | 1 cut(s) | 664 |
| EaeI | YGGCCR | 4 cut(s) | 3, 674, 1788, 1905 |
| EagI | CGGCCG | 1 cut(s) | 1905 |
| Eam1104I | CTCTTC | 3 cut(s) | 804, 1344, 1350 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 664 |
| EarI | CTCTTC | 3 cut(s) | 804, 1344, 1350 |
| EciI | GGCGGA | 4 cut(s) | 80, 315, 563, 859 |
| Ecl136II | GAGCTC | 1 cut(s) | 1585 |
| EclXI | CGGCCG | 1 cut(s) | 1905 |
| Eco130I | CCWWGG | 1 cut(s) | 625 |
| Eco147I | AGGCCT | 1 cut(s) | 1670 |
| Eco24I | GRGCYC | 3 cut(s) | 1005, 1070, 1587 |
| Eco47I | GGWCC | 6 cut(s) | 176, 536, 973, 1149, 1308, 1476 |
| Eco52I | CGGCCG | 1 cut(s) | 1905 |
| Eco53kI | GAGCTC | 1 cut(s) | 1585 |
| Eco57I | CTGAAG | 5 cut(s) | 66, 524, 1298, 1486, 1802 |
| Eco81I | CCTNAGG | 1 cut(s) | 653 |
| Eco88I | CYCGRG | 2 cut(s) | 305, 1412 |
| Eco91I | GGTNACC | 1 cut(s) | 1366 |
| EcoICRI | GAGCTC | 1 cut(s) | 1585 |
| EcoO65I | GGTNACC | 1 cut(s) | 1366 |
| EcoRI | GAATTC | 1 cut(s) | 34 |
| EcoRII | CCWGG | 4 cut(s) | 435, 858, 996, 1569 |
| EcoT14I | CCWWGG | 1 cut(s) | 625 |
| EcoT38I | GRGCYC | 3 cut(s) | 1005, 1070, 1587 |
| EgeI | GGCGCC | 1 cut(s) | 1062 |
| EheI | GGCGCC | 1 cut(s) | 1062 |
| ErhI | CCWWGG | 1 cut(s) | 625 |
| Esp3I | CGTCTC | 1 cut(s) | 875 |
| FaeI | CATG | 5 cut(s) | 216, 484, 1009, 1541, 1768 |
| FaqI | GGGAC | 5 cut(s) | 176, 671, 1162, 1628, 1753 |
| FatI | CATG | 5 cut(s) | 212, 480, 1005, 1537, 1764 |
| FblI | GTMKAC | 1 cut(s) | 1268 |
| FokI | GGATG | 3 cut(s) | 78, 239, 271 |
| FriOI | GRGCYC | 3 cut(s) | 1005, 1070, 1587 |
| FspBI | CTAG | 5 cut(s) | 131, 893, 945, 1859, 1981 |
| GlaI | GCGC | 9 cut(s) | 61, 587, 633, 979, 1029, 1062, 1191, 1229, 1440 |
| GsaI | CCCAGC | 2 cut(s) | 774, 1448 |
| GsuI | CTGGAG | 4 cut(s) | 1019, 1317, 1404, 1775 |
| HaeII | RGCGCY | 3 cut(s) | 589, 635, 1064 |
| HgaI | GACGC | 6 cut(s) | 311, 919, 962, 1063, 1545, 1665 |
| HhaI | GCGC | 9 cut(s) | 62, 588, 634, 980, 1030, 1063, 1192, 1230, 1441 |
| Hin1I | GRCGYC | 2 cut(s) | 1061, 1556 |
| Hin1II | CATG | 5 cut(s) | 216, 484, 1009, 1541, 1768 |
| Hin6I | GCGC | 9 cut(s) | 60, 586, 632, 978, 1028, 1061, 1190, 1228, 1439 |
| HinP1I | GCGC | 9 cut(s) | 60, 586, 632, 978, 1028, 1061, 1190, 1228, 1439 |
| HincII | GTYRAC | 3 cut(s) | 277, 1269, 1331 |
| HindII | GTYRAC | 3 cut(s) | 277, 1269, 1331 |
| HinfI | GANTC | 8 cut(s) | 206, 659, 799, 847, 925, 1493, 1826, 1919 |
| HphI | GGTGA | 4 cut(s) | 325, 1133, 1360, 1877 |
| Hpy166II | GTNNAC | 7 cut(s) | 277, 379, 577, 610, 1269, 1331, 1479 |
| Hpy188I | TCNGA | 3 cut(s) | 46, 760, 1075 |
| Hpy188III | TCNNGA | 6 cut(s) | 39, 179, 646, 803, 1412, 1538 |
| Hpy8I | GTNNAC | 7 cut(s) | 277, 379, 577, 610, 1269, 1331, 1479 |
| Hpy99I | CGWCG | 7 cut(s) | 334, 624, 745, 1270, 1273, 1526, 1659 |
| HpyCH4III | ACNGT | 3 cut(s) | 334, 544, 1138 |
| HpyCH4IV | ACGT | 6 cut(s) | 9, 579, 743, 1428, 1521, 1707 |
| HpyCH4V | TGCA | 5 cut(s) | 91, 107, 148, 379, 690 |
| HpyF3I | CTNAG | 6 cut(s) | 204, 614, 653, 1586, 1794, 1887 |
| HpySE526I | ACGT | 6 cut(s) | 9, 579, 743, 1428, 1521, 1707 |
| Hsp92I | GRCGYC | 2 cut(s) | 1061, 1556 |
| Hsp92II | CATG | 5 cut(s) | 216, 484, 1009, 1541, 1768 |
| HspAI | GCGC | 9 cut(s) | 60, 586, 632, 978, 1028, 1061, 1190, 1228, 1439 |
| KasI | GGCGCC | 1 cut(s) | 1060 |
| Kpn2I | TCCGGA | 2 cut(s) | 38, 178 |
| KspI | CCGCGG | 2 cut(s) | 375, 1178 |
| Kzo9I | GATC | 6 cut(s) | 41, 432, 642, 1780, 1812, 1848 |
| Lsp1109I | GCAGC | 8 cut(s) | 132, 306, 876, 1273, 1279, 1761, 1819, 1888 |
| LweI | GCATC | 5 cut(s) | 100, 462, 489, 837, 1678 |
| MaeI | CTAG | 5 cut(s) | 131, 893, 945, 1859, 1981 |
| MaeII | ACGT | 6 cut(s) | 9, 579, 743, 1428, 1521, 1707 |
| MaeIII | GTNAC | 5 cut(s) | 403, 950, 1121, 1243, 1366 |
| MalI | GATC | 6 cut(s) | 43, 434, 644, 1782, 1814, 1850 |
| MbiI | CCGCTC | 2 cut(s) | 1720, 1741 |
| MboI | GATC | 6 cut(s) | 41, 432, 642, 1780, 1812, 1848 |
| MboII | GAAGA | 7 cut(s) | 821, 1228, 1361, 1367, 1402, 1645, 1813 |
| MflI | RGATCY | 3 cut(s) | 41, 432, 1812 |
| MhlI | GDGCHC | 7 cut(s) | 381, 423, 476, 1005, 1070, 1587, 1980 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 3 cut(s) | 34, 73, 750 |
| MluI | ACGCGT | 1 cut(s) | 911 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| Mly113I | GGCGCC | 1 cut(s) | 1061 |
| MlyI | GAGTC | 5 cut(s) | 215, 653, 793, 919, 1835 |
| MmeI | TCCRAC | 2 cut(s) | 738, 1239 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MroI | TCCGGA | 2 cut(s) | 38, 178 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 2 cut(s) | 81, 753 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1116 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MvaI | CCWGG | 4 cut(s) | 437, 860, 998, 1571 |
| MvnI | CGCG | 8 cut(s) | 62, 374, 819, 913, 978, 1177, 1306, 1441 |
| NarI | GGCGCC | 1 cut(s) | 1061 |
| NciI | CCSGG | 7 cut(s) | 306, 307, 590, 678, 880, 1018, 1372 |
| NdeII | GATC | 6 cut(s) | 41, 432, 642, 1780, 1812, 1848 |
| NheI | GCTAGC | 1 cut(s) | 944 |
| NlaIII | CATG | 5 cut(s) | 216, 484, 1009, 1541, 1768 |
| NmeAIII | GCCGAG | 2 cut(s) | 800, 1089 |
| NmuCI | GTSAC | 4 cut(s) | 403, 950, 1121, 1366 |
| NotI | GCGGCCGC | 1 cut(s) | 1905 |
| NspI | RCATGY | 2 cut(s) | 484, 1768 |
| PagI | TCATGA | 1 cut(s) | 1537 |
| PceI | AGGCCT | 1 cut(s) | 1670 |
| PciI | ACATGT | 2 cut(s) | 480, 1764 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 92, 1061, 1277 |
| PfeI | GAWTC | 3 cut(s) | 847, 1493, 1919 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 159, 483, 1057 |
| PfoI | TCCNGGA | 2 cut(s) | 858, 996 |
| PleI | GAGTC | 5 cut(s) | 214, 653, 793, 919, 1834 |
| PluTI | GGCGCC | 1 cut(s) | 1064 |
| PpsI | GAGTC | 5 cut(s) | 214, 653, 793, 919, 1834 |
| Ppu21I | YACGTR | 1 cut(s) | 580 |
| PscI | ACATGT | 2 cut(s) | 480, 1764 |
| PshAI | GACNNNNGTC | 2 cut(s) | 867, 914 |
| Psp124BI | GAGCTC | 1 cut(s) | 1587 |
| Psp1406I | AACGTT | 1 cut(s) | 1707 |
| Psp6I | CCWGG | 4 cut(s) | 435, 858, 996, 1569 |
| PspEI | GGTNACC | 1 cut(s) | 1366 |
| PspFI | CCCAGC | 2 cut(s) | 770, 1444 |
| PspGI | CCWGG | 4 cut(s) | 435, 858, 996, 1569 |
| PstI | CTGCAG | 1 cut(s) | 150 |
| PstNI | CAGNNNCTG | 3 cut(s) | 436, 1057, 1570 |
| PsuI | RGATCY | 3 cut(s) | 41, 432, 1812 |
| PvuII | CAGCTG | 1 cut(s) | 1424 |
| RsaI | GTAC | 7 cut(s) | 555, 578, 671, 791, 1303, 1520, 1943 |
| RsaNI | GTAC | 7 cut(s) | 554, 577, 670, 790, 1302, 1519, 1942 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1116 |
| SacI | GAGCTC | 1 cut(s) | 1587 |
| SacII | CCGCGG | 2 cut(s) | 375, 1178 |
| SalI | GTCGAC | 1 cut(s) | 1267 |
| SaqAI | TTAA | 2 cut(s) | 81, 753 |
| Sau3AI | GATC | 6 cut(s) | 41, 432, 642, 1780, 1812, 1848 |
| SchI | GAGTC | 5 cut(s) | 215, 653, 793, 919, 1835 |
| SduI | GDGCHC | 7 cut(s) | 381, 423, 476, 1005, 1070, 1587, 1980 |
| SfaNI | GCATC | 5 cut(s) | 100, 462, 489, 837, 1678 |
| SfcI | CTRYAG | 4 cut(s) | 146, 428, 1434, 1607 |
| SfoI | GGCGCC | 1 cut(s) | 1062 |
| Sfr303I | CCGCGG | 2 cut(s) | 375, 1178 |
| SgrBI | CCGCGG | 2 cut(s) | 375, 1178 |
| SgrDI | CGTCGACG | 1 cut(s) | 1267 |
| SinI | GGWCC | 6 cut(s) | 176, 536, 973, 1149, 1308, 1476 |
| SmaI | CCCGGG | 1 cut(s) | 307 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1116 |
| Sse9I | AATT | 3 cut(s) | 34, 73, 750 |
| SseBI | AGGCCT | 1 cut(s) | 1670 |
| SspDI | GGCGCC | 1 cut(s) | 1060 |
| SspMI | CTAG | 5 cut(s) | 131, 893, 945, 1859, 1981 |
| SstI | GAGCTC | 1 cut(s) | 1587 |
| StuI | AGGCCT | 1 cut(s) | 1670 |
| StyI | CCWWGG | 1 cut(s) | 625 |
| TaaI | ACNGT | 3 cut(s) | 334, 544, 1138 |
| TaiI | ACGT | 6 cut(s) | 12, 582, 746, 1431, 1524, 1710 |
| TaqI | TCGA | 5 cut(s) | 23, 222, 645, 1268, 1650 |
| TaqII | GACCGA | 3 cut(s) | 553, 1464, 1973 |
| TasI | AATT | 3 cut(s) | 34, 73, 750 |
| TfiI | GAWTC | 3 cut(s) | 847, 1493, 1919 |
| Tru1I | TTAA | 2 cut(s) | 81, 753 |
| Tru9I | TTAA | 2 cut(s) | 81, 753 |
| TscAI | CASTG | 4 cut(s) | 34, 109, 1384, 1959 |
| TseFI | GTSAC | 4 cut(s) | 403, 950, 1121, 1366 |
| TseI | GCWGC | 8 cut(s) | 145, 319, 889, 1286, 1292, 1774, 1832, 1901 |
| Tsp45I | GTSAC | 4 cut(s) | 403, 950, 1121, 1366 |
| TspDTI | ATGAA | 1 cut(s) | 1526 |
| TspGWI | ACGGA | 4 cut(s) | 84, 147, 857, 1250 |
| TspMI | CCCGGG | 1 cut(s) | 305 |
| TspRI | CASTG | 4 cut(s) | 34, 109, 1384, 1959 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 159, 483, 1057 |
| VneI | GTGCAC | 1 cut(s) | 377 |
| VpaK11BI | GGWCC | 6 cut(s) | 176, 536, 973, 1149, 1308, 1476 |
| XapI | RAATTY | 2 cut(s) | 34, 73 |
| XceI | RCATGY | 2 cut(s) | 484, 1768 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 1112, 1255, 1567 |
| XmaI | CCCGGG | 1 cut(s) | 305 |
| XmiI | GTMKAC | 1 cut(s) | 1268 |
| XspI | CTAG | 5 cut(s) | 131, 893, 945, 1859, 1981 |