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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 158, 194 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 204 |
| AccII | CGCG | 1 cut(s) | 81 |
| AcoI | YGGCCR | 2 cut(s) | 87, 165 |
| AfaI | GTAC | 2 cut(s) | 107, 265 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 85, 204, 277, 284, 358 |
| AgeI | ACCGGT | 1 cut(s) | 223 |
| AgsI | TTSAA | 1 cut(s) | 284 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 420 |
| AjnI | CCWGG | 3 cut(s) | 271, 378, 393 |
| AluBI | AGCT | 2 cut(s) | 248, 503 |
| AluI | AGCT | 2 cut(s) | 248, 503 |
| Alw26I | GTCTC | 2 cut(s) | 369, 407 |
| Ama87I | CYCGRG | 2 cut(s) | 323, 432 |
| AoxI | GGCC | 5 cut(s) | 24, 87, 153, 165, 471 |
| ApeKI | GCWGC | 3 cut(s) | 83, 146, 184 |
| AsiGI | ACCGGT | 1 cut(s) | 223 |
| AspLEI | GCGC | 1 cut(s) | 83 |
| AspS9I | GGNCC | 2 cut(s) | 275, 438 |
| AsuHPI | GGTGA | 1 cut(s) | 43 |
| AvaI | CYCGRG | 2 cut(s) | 323, 432 |
| AvaII | GGWCC | 2 cut(s) | 275, 438 |
| BalI | TGGCCA | 1 cut(s) | 167 |
| BanI | GGYRCC | 2 cut(s) | 158, 194 |
| BbvI | GCAGC | 3 cut(s) | 70, 158, 196 |
| BccI | CCATC | 3 cut(s) | 206, 395, 479 |
| BceAI | ACGGC | 2 cut(s) | 80, 356 |
| BciT130I | CCWGG | 3 cut(s) | 273, 380, 395 |
| BcoDI | GTCTC | 2 cut(s) | 369, 407 |
| BfaI | CTAG | 1 cut(s) | 420 |
| BfmI | CTRYAG | 1 cut(s) | 182 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 23 |
| BmcAI | AGTACT | 1 cut(s) | 265 |
| Bme1390I | CCNGG | 3 cut(s) | 273, 380, 395 |
| Bme18I | GGWCC | 2 cut(s) | 275, 438 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 420 |
| BmeT110I | CYCGRG | 2 cut(s) | 323, 432 |
| BmgT120I | GGNCC | 2 cut(s) | 275, 438 |
| BmiI | GGNNCC | 5 cut(s) | 77, 160, 196, 439, 440 |
| BmrFI | CCNGG | 3 cut(s) | 273, 380, 395 |
| BmrI | ACTGGG | 2 cut(s) | 214, 346 |
| BmsI | GCATC | 1 cut(s) | 224 |
| BmuI | ACTGGG | 2 cut(s) | 214, 346 |
| Bsa29I | ATCGAT | 1 cut(s) | 218 |
| BsaI | GGTCTC | 1 cut(s) | 407 |
| BsaJI | CCNNGG | 9 cut(s) | 27, 69, 96, 162, 271, 324, 357, 393, 433 |
| BsaWI | WCCGGW | 2 cut(s) | 223, 277 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 85, 204, 277, 284, 358 |
| Bse118I | RCCGGY | 3 cut(s) | 155, 223, 476 |
| Bse1I | ACTGG | 2 cut(s) | 209, 352 |
| Bse3DI | GCAATG | 1 cut(s) | 141 |
| BseBI | CCWGG | 3 cut(s) | 273, 380, 395 |
| BseCI | ATCGAT | 1 cut(s) | 218 |
| BseDI | CCNNGG | 9 cut(s) | 27, 69, 96, 162, 271, 324, 357, 393, 433 |
| BseGI | GGATG | 3 cut(s) | 52, 406, 460 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 85, 204, 277, 284, 358 |
| BseMI | GCAATG | 1 cut(s) | 141 |
| BseMII | CTCAG | 2 cut(s) | 53, 350 |
| BseNI | ACTGG | 2 cut(s) | 209, 352 |
| BseRI | GAGGAG | 1 cut(s) | 240 |
| BseX3I | CGGCCG | 1 cut(s) | 87 |
| BseXI | GCAGC | 3 cut(s) | 70, 158, 196 |
| Bsh1236I | CGCG | 1 cut(s) | 81 |
| Bsh1285I | CGRYCG | 2 cut(s) | 90, 228 |
| BshFI | GGCC | 5 cut(s) | 26, 89, 155, 167, 473 |
| BshNI | GGYRCC | 2 cut(s) | 158, 194 |
| BshTI | ACCGGT | 1 cut(s) | 223 |
| BshVI | ATCGAT | 1 cut(s) | 218 |
| BsiEI | CGRYCG | 2 cut(s) | 90, 228 |
| BsiHKCI | CYCGRG | 2 cut(s) | 323, 432 |
| BsiSI | CCGG | 4 cut(s) | 156, 224, 278, 477 |
| BslFI | GGGAC | 2 cut(s) | 408, 424 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 85, 204, 277, 284, 358 |
| BsmAI | GTCTC | 2 cut(s) | 369, 407 |
| BsmFI | GGGAC | 2 cut(s) | 408, 424 |
| BsnI | GGCC | 5 cut(s) | 26, 89, 155, 167, 473 |
| Bso31I | GGTCTC | 1 cut(s) | 407 |
| BsoBI | CYCGRG | 2 cut(s) | 323, 432 |
| Bsp19I | CCATGG | 1 cut(s) | 162 |
| BspANI | GGCC | 5 cut(s) | 26, 89, 155, 167, 473 |
| BspCNI | CTCAG | 2 cut(s) | 54, 349 |
| BspDI | ATCGAT | 1 cut(s) | 218 |
| BspFNI | CGCG | 1 cut(s) | 81 |
| BspLI | GGNNCC | 5 cut(s) | 77, 160, 196, 439, 440 |
| BspMAI | CTGCAG | 1 cut(s) | 186 |
| BspT107I | GGYRCC | 2 cut(s) | 158, 194 |
| BspTNI | GGTCTC | 1 cut(s) | 407 |
| BsrDI | GCAATG | 1 cut(s) | 141 |
| BsrFI | RCCGGY | 3 cut(s) | 155, 223, 476 |
| BsrI | ACTGG | 2 cut(s) | 209, 352 |
| BssAI | RCCGGY | 3 cut(s) | 155, 223, 476 |
| BssECI | CCNNGG | 9 cut(s) | 27, 69, 96, 162, 271, 324, 357, 393, 433 |
| BssT1I | CCWWGG | 1 cut(s) | 162 |
| Bst2UI | CCWGG | 3 cut(s) | 273, 380, 395 |
| Bst4CI | ACNGT | 1 cut(s) | 39 |
| BstC8I | GCNNGC | 5 cut(s) | 58, 237, 292, 385, 471 |
| BstDEI | CTNAG | 2 cut(s) | 62, 336 |
| BstDSI | CCRYGG | 2 cut(s) | 96, 162 |
| BstF5I | GGATG | 3 cut(s) | 52, 406, 460 |
| BstFNI | CGCG | 1 cut(s) | 81 |
| BstHHI | GCGC | 1 cut(s) | 83 |
| BstMAI | GTCTC | 2 cut(s) | 369, 407 |
| BstMCI | CGRYCG | 2 cut(s) | 90, 228 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 23, 89, 92, 152, 245, 495, 509, 518 |
| BstNI | CCWGG | 3 cut(s) | 273, 380, 395 |
| BstSCI | CCNGG | 3 cut(s) | 271, 378, 393 |
| BstSFI | CTRYAG | 1 cut(s) | 182 |
| BstUI | CGCG | 1 cut(s) | 81 |
| BstV1I | GCAGC | 3 cut(s) | 70, 158, 196 |
| BstZI | CGGCCG | 1 cut(s) | 87 |
| Bsu15I | ATCGAT | 1 cut(s) | 218 |
| BsuRI | GGCC | 5 cut(s) | 26, 89, 155, 167, 473 |
| BsuTUI | ATCGAT | 1 cut(s) | 218 |
| BtgI | CCRYGG | 2 cut(s) | 96, 162 |
| BtsCI | GGATG | 3 cut(s) | 52, 406, 460 |
| Cac8I | GCNNGC | 5 cut(s) | 58, 237, 292, 385, 471 |
| CciNI | GCGGCCGC | 1 cut(s) | 87 |
| CfoI | GCGC | 1 cut(s) | 83 |
| Cfr10I | RCCGGY | 3 cut(s) | 155, 223, 476 |
| Cfr13I | GGNCC | 2 cut(s) | 275, 438 |
| ClaI | ATCGAT | 1 cut(s) | 218 |
| Csp6I | GTAC | 2 cut(s) | 106, 264 |
| CspAI | ACCGGT | 1 cut(s) | 223 |
| CviAII | CATG | 2 cut(s) | 163, 368 |
| CviQI | GTAC | 2 cut(s) | 106, 264 |
| DdeI | CTNAG | 2 cut(s) | 62, 336 |
| DriI | GACNNNNNGTC | 1 cut(s) | 420 |
| EaeI | YGGCCR | 2 cut(s) | 87, 165 |
| EagI | CGGCCG | 1 cut(s) | 87 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 420 |
| EciI | GGCGGA | 3 cut(s) | 330, 413, 453 |
| EclXI | CGGCCG | 1 cut(s) | 87 |
| Eco130I | CCWWGG | 1 cut(s) | 162 |
| Eco31I | GGTCTC | 1 cut(s) | 407 |
| Eco47I | GGWCC | 2 cut(s) | 275, 438 |
| Eco52I | CGGCCG | 1 cut(s) | 87 |
| Eco88I | CYCGRG | 2 cut(s) | 323, 432 |
| EcoO109I | RGGNCCY | 1 cut(s) | 438 |
| EcoRII | CCWGG | 3 cut(s) | 271, 378, 393 |
| EcoT14I | CCWWGG | 1 cut(s) | 162 |
| ErhI | CCWWGG | 1 cut(s) | 162 |
| FaeI | CATG | 2 cut(s) | 166, 371 |
| FaiI | YATR | 2 cut(s) | 164, 369 |
| FaqI | GGGAC | 2 cut(s) | 408, 424 |
| FatI | CATG | 2 cut(s) | 162, 367 |
| FauI | CCCGC | 3 cut(s) | 65, 517, 526 |
| FokI | GGATG | 3 cut(s) | 59, 413, 447 |
| FspBI | CTAG | 1 cut(s) | 420 |
| GlaI | GCGC | 1 cut(s) | 82 |
| HaeIII | GGCC | 5 cut(s) | 26, 89, 155, 167, 473 |
| HapII | CCGG | 4 cut(s) | 156, 224, 278, 477 |
| HhaI | GCGC | 1 cut(s) | 83 |
| Hin1II | CATG | 2 cut(s) | 166, 371 |
| Hin6I | GCGC | 1 cut(s) | 81 |
| HinP1I | GCGC | 1 cut(s) | 81 |
| HinfI | GANTC | 3 cut(s) | 8, 101, 318 |
| HpaII | CCGG | 4 cut(s) | 156, 224, 278, 477 |
| HphI | GGTGA | 1 cut(s) | 43 |
| Hpy166II | GTNNAC | 1 cut(s) | 121 |
| Hpy188I | TCNGA | 2 cut(s) | 255, 358 |
| Hpy8I | GTNNAC | 1 cut(s) | 121 |
| HpyAV | CCTTC | 5 cut(s) | 145, 184, 205, 278, 485 |
| HpyCH4III | ACNGT | 1 cut(s) | 39 |
| HpyCH4V | TGCA | 1 cut(s) | 184 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 23, 89, 92, 152, 245, 495, 509, 518 |
| HpyF3I | CTNAG | 2 cut(s) | 62, 336 |
| Hsp92II | CATG | 2 cut(s) | 166, 371 |
| HspAI | GCGC | 1 cut(s) | 81 |
| KflI | GGGWCCC | 1 cut(s) | 438 |
| LmnI | GCTCC | 3 cut(s) | 75, 253, 500 |
| Lsp1109I | GCAGC | 3 cut(s) | 70, 158, 196 |
| LweI | GCATC | 1 cut(s) | 224 |
| MaeI | CTAG | 1 cut(s) | 420 |
| MlsI | TGGCCA | 1 cut(s) | 167 |
| MluNI | TGGCCA | 1 cut(s) | 167 |
| MlyI | GAGTC | 3 cut(s) | 17, 110, 312 |
| MmeI | TCCRAC | 2 cut(s) | 21, 278 |
| MnlI | CCTC | 8 cut(s) | 22, 37, 64, 261, 319, 352, 428, 466 |
| Mox20I | TGGCCA | 1 cut(s) | 167 |
| MscI | TGGCCA | 1 cut(s) | 167 |
| Msp20I | TGGCCA | 1 cut(s) | 167 |
| MspA1I | CMGCKG | 1 cut(s) | 4 |
| MspI | CCGG | 4 cut(s) | 156, 224, 278, 477 |
| MspR9I | CCNGG | 3 cut(s) | 273, 380, 395 |
| MvaI | CCWGG | 3 cut(s) | 273, 380, 395 |
| MvnI | CGCG | 1 cut(s) | 81 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 23, 89, 92, 152, 245, 495, 509, 518 |
| NcoI | CCATGG | 1 cut(s) | 162 |
| NlaIII | CATG | 2 cut(s) | 166, 371 |
| NlaIV | GGNNCC | 5 cut(s) | 77, 160, 196, 439, 440 |
| NmeAIII | GCCGAG | 2 cut(s) | 52, 94 |
| NotI | GCGGCCGC | 1 cut(s) | 87 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 146 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 204 |
| PinAI | ACCGGT | 1 cut(s) | 223 |
| PleI | GAGTC | 3 cut(s) | 16, 109, 312 |
| PpsI | GAGTC | 3 cut(s) | 16, 109, 312 |
| PpuMI | RGGWCCY | 1 cut(s) | 438 |
| Psp5II | RGGWCCY | 1 cut(s) | 438 |
| Psp6I | CCWGG | 3 cut(s) | 271, 378, 393 |
| PspGI | CCWGG | 3 cut(s) | 271, 378, 393 |
| PspN4I | GGNNCC | 5 cut(s) | 77, 160, 196, 439, 440 |
| PspPI | GGNCC | 2 cut(s) | 275, 438 |
| PspPPI | RGGWCCY | 1 cut(s) | 438 |
| PstI | CTGCAG | 1 cut(s) | 186 |
| RsaI | GTAC | 2 cut(s) | 107, 265 |
| RsaNI | GTAC | 2 cut(s) | 106, 264 |
| Sau96I | GGNCC | 2 cut(s) | 275, 438 |
| ScaI | AGTACT | 1 cut(s) | 265 |
| SchI | GAGTC | 3 cut(s) | 17, 110, 312 |
| ScrFI | CCNGG | 3 cut(s) | 273, 380, 395 |
| SetI | ASST | 6 cut(s) | 33, 250, 289, 363, 496, 505 |
| SfaNI | GCATC | 1 cut(s) | 224 |
| SfcI | CTRYAG | 1 cut(s) | 182 |
| SgrAI | CRCCGGYG | 1 cut(s) | 476 |
| SinI | GGWCC | 2 cut(s) | 275, 438 |
| SspMI | CTAG | 1 cut(s) | 420 |
| StyD4I | CCNGG | 3 cut(s) | 271, 378, 393 |
| StyI | CCWWGG | 1 cut(s) | 162 |
| TaaI | ACNGT | 1 cut(s) | 39 |
| TaqI | TCGA | 2 cut(s) | 201, 218 |
| TatI | WGTACW | 1 cut(s) | 263 |
| TauI | GCSGC | 8 cut(s) | 17, 81, 89, 92, 95, 235, 469, 476 |
| TseI | GCWGC | 3 cut(s) | 83, 146, 184 |
| TspDTI | ATGAA | 1 cut(s) | 63 |
| TspGWI | ACGGA | 1 cut(s) | 155 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 204 |
| VpaK11BI | GGWCC | 2 cut(s) | 275, 438 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 169 |
| XspI | CTAG | 1 cut(s) | 420 |
| ZrmI | AGTACT | 1 cut(s) | 265 |