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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 470, 563 |
| AccBSI | CCGCTC | 3 cut(s) | 112, 178, 570 |
| AccII | CGCG | 3 cut(s) | 143, 362, 557 |
| AclWI | GGATC | 1 cut(s) | 616 |
| AcoI | YGGCCR | 1 cut(s) | 363 |
| AcuI | CTGAAG | 2 cut(s) | 366, 479 |
| AcyI | GRCGYC | 3 cut(s) | 115, 147, 471 |
| AfaI | GTAC | 1 cut(s) | 401 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 235, 339, 340, 560, 605, 634 |
| AgsI | TTSAA | 3 cut(s) | 8, 377, 385 |
| AjiI | CACGTC | 1 cut(s) | 505 |
| AluBI | AGCT | 5 cut(s) | 43, 76, 97, 211, 265 |
| AluI | AGCT | 5 cut(s) | 43, 76, 97, 211, 265 |
| Alw21I | GWGCWC | 1 cut(s) | 526 |
| Alw26I | GTCTC | 2 cut(s) | 68, 208 |
| AlwI | GGATC | 1 cut(s) | 616 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 28 |
| Ama87I | CYCGRG | 1 cut(s) | 150 |
| AoxI | GGCC | 2 cut(s) | 363, 435 |
| ApaI | GGGCCC | 1 cut(s) | 439 |
| ApeKI | GCWGC | 6 cut(s) | 22, 277, 310, 368, 508, 613 |
| AspLEI | GCGC | 2 cut(s) | 473, 593 |
| AspS9I | GGNCC | 2 cut(s) | 435, 436 |
| AvaI | CYCGRG | 1 cut(s) | 150 |
| AxyI | CCTNAGG | 1 cut(s) | 338 |
| BaeGI | GKGCMC | 2 cut(s) | 439, 568 |
| BanI | GGYRCC | 2 cut(s) | 470, 563 |
| BanII | GRGCYC | 1 cut(s) | 439 |
| Bbv12I | GWGCWC | 1 cut(s) | 526 |
| BbvI | GCAGC | 6 cut(s) | 34, 289, 322, 355, 520, 625 |
| BccI | CCATC | 2 cut(s) | 100, 482 |
| BciVI | GTATCC | 1 cut(s) | 346 |
| BcoDI | GTCTC | 2 cut(s) | 68, 208 |
| BfaI | CTAG | 2 cut(s) | 317, 440 |
| BfmI | CTRYAG | 1 cut(s) | 233 |
| BfoI | RGCGCY | 1 cut(s) | 474 |
| BfuI | GTATCC | 1 cut(s) | 346 |
| BmeT110I | CYCGRG | 1 cut(s) | 150 |
| BmgBI | CACGTC | 1 cut(s) | 505 |
| BmgT120I | GGNCC | 2 cut(s) | 435, 436 |
| BmiI | GGNNCC | 4 cut(s) | 436, 437, 472, 565 |
| BmrI | ACTGGG | 1 cut(s) | 622 |
| BmsI | GCATC | 1 cut(s) | 500 |
| BmuI | ACTGGG | 1 cut(s) | 622 |
| BpmI | CTGGAG | 2 cut(s) | 50, 233 |
| Bpu10I | CCTNAGC | 2 cut(s) | 44, 571 |
| BsaHI | GRCGYC | 3 cut(s) | 115, 147, 471 |
| BsaJI | CCNNGG | 3 cut(s) | 151, 252, 555 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 188, 218 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 235, 339, 340, 560, 605, 634 |
| Bse118I | RCCGGY | 2 cut(s) | 511, 598 |
| Bse1I | ACTGG | 1 cut(s) | 628 |
| Bse21I | CCTNAGG | 1 cut(s) | 338 |
| BseDI | CCNNGG | 3 cut(s) | 151, 252, 555 |
| BseGI | GGATG | 1 cut(s) | 491 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 235, 339, 340, 560, 605, 634 |
| BseMII | CTCAG | 3 cut(s) | 329, 408, 585 |
| BseNI | ACTGG | 1 cut(s) | 628 |
| BseSI | GKGCMC | 2 cut(s) | 439, 568 |
| BseX3I | CGGCCG | 1 cut(s) | 363 |
| BseXI | GCAGC | 6 cut(s) | 34, 289, 322, 355, 520, 625 |
| BseYI | CCCAGC | 2 cut(s) | 431, 495 |
| BsgI | GTGCAG | 3 cut(s) | 296, 329, 527 |
| Bsh1236I | CGCG | 3 cut(s) | 143, 362, 557 |
| Bsh1285I | CGRYCG | 3 cut(s) | 199, 366, 599 |
| BshFI | GGCC | 2 cut(s) | 365, 437 |
| BshNI | GGYRCC | 2 cut(s) | 470, 563 |
| BsiEI | CGRYCG | 3 cut(s) | 199, 366, 599 |
| BsiHKAI | GWGCWC | 1 cut(s) | 526 |
| BsiHKCI | CYCGRG | 1 cut(s) | 150 |
| BsiSI | CCGG | 3 cut(s) | 512, 530, 599 |
| BslFI | GGGAC | 1 cut(s) | 194 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 235, 339, 340, 560, 605, 634 |
| BsmAI | GTCTC | 2 cut(s) | 68, 208 |
| BsmFI | GGGAC | 1 cut(s) | 194 |
| BsmI | GAATGC | 1 cut(s) | 380 |
| BsnI | GGCC | 2 cut(s) | 365, 437 |
| BsoBI | CYCGRG | 1 cut(s) | 150 |
| Bsp120I | GGGCCC | 1 cut(s) | 435 |
| Bsp1286I | GDGCHC | 3 cut(s) | 439, 526, 568 |
| Bsp143I | GATC | 1 cut(s) | 608 |
| BspANI | GGCC | 2 cut(s) | 365, 437 |
| BspCNI | CTCAG | 3 cut(s) | 330, 409, 584 |
| BspFNI | CGCG | 3 cut(s) | 143, 362, 557 |
| BspLI | GGNNCC | 4 cut(s) | 436, 437, 472, 565 |
| BspPI | GGATC | 1 cut(s) | 616 |
| BspT107I | GGYRCC | 2 cut(s) | 470, 563 |
| BsrBI | CCGCTC | 3 cut(s) | 112, 178, 570 |
| BsrFI | RCCGGY | 2 cut(s) | 511, 598 |
| BsrI | ACTGG | 1 cut(s) | 628 |
| BssAI | RCCGGY | 2 cut(s) | 511, 598 |
| BssECI | CCNNGG | 3 cut(s) | 151, 252, 555 |
| BssMI | GATC | 1 cut(s) | 608 |
| BssNI | GRCGYC | 3 cut(s) | 115, 147, 471 |
| BssT1I | CCWWGG | 1 cut(s) | 252 |
| Bst4CI | ACNGT | 4 cut(s) | 166, 200, 358, 390 |
| BstACI | GRCGYC | 3 cut(s) | 115, 147, 471 |
| BstC8I | GCNNGC | 5 cut(s) | 78, 99, 334, 513, 568 |
| BstDEI | CTNAG | 5 cut(s) | 44, 338, 417, 516, 571 |
| BstDSI | CCRYGG | 1 cut(s) | 555 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 233 |
| BstF5I | GGATG | 1 cut(s) | 491 |
| BstFNI | CGCG | 3 cut(s) | 143, 362, 557 |
| BstH2I | RGCGCY | 1 cut(s) | 474 |
| BstHHI | GCGC | 2 cut(s) | 473, 593 |
| BstKTI | GATC | 1 cut(s) | 611 |
| BstMAI | GTCTC | 2 cut(s) | 68, 208 |
| BstMBI | GATC | 1 cut(s) | 608 |
| BstMCI | CGRYCG | 3 cut(s) | 199, 366, 599 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 238, 368, 377, 505, 521, 563, 576, 599 |
| BstSFI | CTRYAG | 1 cut(s) | 233 |
| BstSLI | GKGCMC | 2 cut(s) | 439, 568 |
| BstUI | CGCG | 3 cut(s) | 143, 362, 557 |
| BstV1I | GCAGC | 6 cut(s) | 34, 289, 322, 355, 520, 625 |
| BstZI | CGGCCG | 1 cut(s) | 363 |
| Bsu36I | CCTNAGG | 1 cut(s) | 338 |
| BsuI | GTATCC | 1 cut(s) | 346 |
| BsuRI | GGCC | 2 cut(s) | 365, 437 |
| BtgI | CCRYGG | 1 cut(s) | 555 |
| BtgZI | GCGATG | 1 cut(s) | 208 |
| BtrI | CACGTC | 1 cut(s) | 505 |
| BtsCI | GGATG | 1 cut(s) | 491 |
| Cac8I | GCNNGC | 5 cut(s) | 78, 99, 334, 513, 568 |
| CaiI | CAGNNNCTG | 1 cut(s) | 28 |
| CciNI | GCGGCCGC | 1 cut(s) | 363 |
| CfoI | GCGC | 2 cut(s) | 473, 593 |
| Cfr10I | RCCGGY | 2 cut(s) | 511, 598 |
| Cfr13I | GGNCC | 2 cut(s) | 435, 436 |
| Cfr42I | CCGCGG | 1 cut(s) | 558 |
| CseI | GACGC | 2 cut(s) | 104, 155 |
| Csp6I | GTAC | 1 cut(s) | 400 |
| CviQI | GTAC | 1 cut(s) | 400 |
| DdeI | CTNAG | 5 cut(s) | 44, 338, 417, 516, 571 |
| DinI | GGCGCC | 1 cut(s) | 472 |
| DpnI | GATC | 1 cut(s) | 610 |
| DpnII | GATC | 1 cut(s) | 608 |
| EaeI | YGGCCR | 1 cut(s) | 363 |
| EagI | CGGCCG | 1 cut(s) | 363 |
| EciI | GGCGGA | 4 cut(s) | 116, 410, 516, 617 |
| EclXI | CGGCCG | 1 cut(s) | 363 |
| Eco130I | CCWWGG | 1 cut(s) | 252 |
| Eco24I | GRGCYC | 1 cut(s) | 439 |
| Eco52I | CGGCCG | 1 cut(s) | 363 |
| Eco57I | CTGAAG | 2 cut(s) | 366, 479 |
| Eco81I | CCTNAGG | 1 cut(s) | 338 |
| Eco88I | CYCGRG | 1 cut(s) | 150 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 233 |
| EcoO109I | RGGNCCY | 2 cut(s) | 435, 436 |
| EcoT14I | CCWWGG | 1 cut(s) | 252 |
| EcoT38I | GRGCYC | 1 cut(s) | 439 |
| EgeI | GGCGCC | 1 cut(s) | 472 |
| EheI | GGCGCC | 1 cut(s) | 472 |
| ErhI | CCWWGG | 1 cut(s) | 252 |
| FaiI | YATR | 3 cut(s) | 272, 449, 455 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 27, 59 |
| FaqI | GGGAC | 1 cut(s) | 194 |
| FauI | CCCGC | 5 cut(s) | 171, 273, 341, 562, 575 |
| FokI | GGATG | 1 cut(s) | 478 |
| FriOI | GRGCYC | 1 cut(s) | 439 |
| FspBI | CTAG | 2 cut(s) | 317, 440 |
| GlaI | GCGC | 2 cut(s) | 472, 592 |
| GsaI | CCCAGC | 2 cut(s) | 435, 499 |
| GsuI | CTGGAG | 2 cut(s) | 50, 233 |
| HaeII | RGCGCY | 1 cut(s) | 474 |
| HaeIII | GGCC | 2 cut(s) | 365, 437 |
| HapII | CCGG | 3 cut(s) | 512, 530, 599 |
| HgaI | GACGC | 2 cut(s) | 104, 155 |
| HhaI | GCGC | 2 cut(s) | 473, 593 |
| Hin1I | GRCGYC | 3 cut(s) | 115, 147, 471 |
| Hin6I | GCGC | 2 cut(s) | 471, 591 |
| HinP1I | GCGC | 2 cut(s) | 471, 591 |
| HinfI | GANTC | 3 cut(s) | 284, 419, 619 |
| HpaII | CCGG | 3 cut(s) | 512, 530, 599 |
| Hpy188I | TCNGA | 2 cut(s) | 414, 634 |
| Hpy188III | TCNNGA | 2 cut(s) | 67, 484 |
| Hpy99I | CGWCG | 1 cut(s) | 506 |
| HpyAV | CCTTC | 6 cut(s) | 29, 64, 341, 421, 554, 599 |
| HpyCH4III | ACNGT | 4 cut(s) | 166, 200, 358, 390 |
| HpyCH4IV | ACGT | 1 cut(s) | 504 |
| HpyCH4V | TGCA | 3 cut(s) | 277, 310, 508 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 238, 368, 377, 505, 521, 563, 576, 599 |
| HpyF3I | CTNAG | 5 cut(s) | 44, 338, 417, 516, 571 |
| HpySE526I | ACGT | 1 cut(s) | 504 |
| Hsp92I | GRCGYC | 3 cut(s) | 115, 147, 471 |
| HspAI | GCGC | 2 cut(s) | 471, 591 |
| KasI | GGCGCC | 1 cut(s) | 470 |
| KroI | GCCGGC | 1 cut(s) | 511 |
| KroNI | GCCGGC | 1 cut(s) | 513 |
| KspI | CCGCGG | 1 cut(s) | 558 |
| Kzo9I | GATC | 1 cut(s) | 608 |
| LmnI | GCTCC | 6 cut(s) | 40, 73, 109, 214, 238, 529 |
| Lsp1109I | GCAGC | 6 cut(s) | 34, 289, 322, 355, 520, 625 |
| LweI | GCATC | 1 cut(s) | 500 |
| MaeI | CTAG | 2 cut(s) | 317, 440 |
| MaeII | ACGT | 1 cut(s) | 504 |
| MaeIII | GTNAC | 1 cut(s) | 134 |
| MalI | GATC | 1 cut(s) | 610 |
| MbiI | CCGCTC | 3 cut(s) | 112, 178, 570 |
| MboI | GATC | 1 cut(s) | 608 |
| MboII | GAAGA | 1 cut(s) | 28 |
| MhlI | GDGCHC | 3 cut(s) | 439, 526, 568 |
| Mly113I | GGCGCC | 1 cut(s) | 471 |
| MlyI | GAGTC | 3 cut(s) | 293, 428, 613 |
| MmeI | TCCRAC | 1 cut(s) | 612 |
| MnlI | CCTC | 9 cut(s) | 36, 43, 81, 146, 183, 298, 313, 333, 628 |
| MroNI | GCCGGC | 1 cut(s) | 511 |
| MslI | CAYNNNNRTG | 1 cut(s) | 272 |
| MspA1I | CMGCKG | 4 cut(s) | 280, 313, 368, 557 |
| MspI | CCGG | 3 cut(s) | 512, 530, 599 |
| Mva1269I | GAATGC | 1 cut(s) | 380 |
| MvnI | CGCG | 3 cut(s) | 143, 362, 557 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 238, 368, 377, 505, 521, 563, 576, 599 |
| NaeI | GCCGGC | 1 cut(s) | 513 |
| NarI | GGCGCC | 1 cut(s) | 471 |
| NdeII | GATC | 1 cut(s) | 608 |
| NgoMIV | GCCGGC | 1 cut(s) | 511 |
| NlaIV | GGNNCC | 4 cut(s) | 436, 437, 472, 565 |
| NmuCI | GTSAC | 1 cut(s) | 134 |
| NotI | GCGGCCGC | 1 cut(s) | 363 |
| PctI | GAATGC | 1 cut(s) | 380 |
| PdiI | GCCGGC | 1 cut(s) | 513 |
| PflFI | GACNNNGTC | 2 cut(s) | 200, 418 |
| PleI | GAGTC | 3 cut(s) | 292, 427, 613 |
| PluTI | GGCGCC | 1 cut(s) | 474 |
| PpsI | GAGTC | 3 cut(s) | 292, 427, 613 |
| PspFI | CCCAGC | 2 cut(s) | 431, 495 |
| PspN4I | GGNNCC | 4 cut(s) | 436, 437, 472, 565 |
| PspOMI | GGGCCC | 1 cut(s) | 435 |
| PspPI | GGNCC | 2 cut(s) | 435, 436 |
| PstNI | CAGNNNCTG | 1 cut(s) | 28 |
| PsyI | GACNNNGTC | 2 cut(s) | 200, 418 |
| RsaI | GTAC | 1 cut(s) | 401 |
| RsaNI | GTAC | 1 cut(s) | 400 |
| RseI | CAYNNNNRTG | 1 cut(s) | 272 |
| SacII | CCGCGG | 1 cut(s) | 558 |
| Sau3AI | GATC | 1 cut(s) | 608 |
| Sau96I | GGNCC | 2 cut(s) | 435, 436 |
| SchI | GAGTC | 3 cut(s) | 293, 428, 613 |
| SduI | GDGCHC | 3 cut(s) | 439, 526, 568 |
| SfaNI | GCATC | 1 cut(s) | 500 |
| SfcI | CTRYAG | 1 cut(s) | 233 |
| SfoI | GGCGCC | 1 cut(s) | 472 |
| Sfr303I | CCGCGG | 1 cut(s) | 558 |
| SgrBI | CCGCGG | 1 cut(s) | 558 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 272 |
| SspDI | GGCGCC | 1 cut(s) | 470 |
| SspMI | CTAG | 2 cut(s) | 317, 440 |
| StyI | CCWWGG | 1 cut(s) | 252 |
| TaaI | ACNGT | 4 cut(s) | 166, 200, 358, 390 |
| TaiI | ACGT | 1 cut(s) | 507 |
| TaqI | TCGA | 2 cut(s) | 33, 477 |
| TatI | WGTACW | 1 cut(s) | 399 |
| TauI | GCSGC | 9 cut(s) | 14, 83, 86, 115, 251, 293, 316, 365, 368 |
| TseFI | GTSAC | 1 cut(s) | 134 |
| TseI | GCWGC | 6 cut(s) | 22, 277, 310, 368, 508, 613 |
| Tsp45I | GTSAC | 1 cut(s) | 134 |
| TspGWI | ACGGA | 1 cut(s) | 317 |
| Tth111I | GACNNNGTC | 2 cut(s) | 200, 418 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 233 |
| XspI | CTAG | 2 cut(s) | 317, 440 |