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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 971, 1007, 1112 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1017 |
| AccBSI | CCGCTC | 4 cut(s) | 436, 574, 727, 1281 |
| AccII | CGCG | 5 cut(s) | 79, 111, 211, 288, 894 |
| AcoI | YGGCCR | 2 cut(s) | 99, 783 |
| AcuI | CTGAAG | 3 cut(s) | 481, 797, 1335 |
| AcyI | GRCGYC | 2 cut(s) | 551, 1299 |
| AfaI | GTAC | 3 cut(s) | 355, 920, 1078 |
| AfeI | AGCGCT | 1 cut(s) | 880 |
| AflIII | ACRYGT | 1 cut(s) | 759 |
| AgeI | ACCGGT | 1 cut(s) | 968 |
| AgsI | TTSAA | 4 cut(s) | 186, 658, 806, 1109 |
| AjiI | CACGTC | 1 cut(s) | 517 |
| AjnI | CCWGG | 5 cut(s) | 363, 453, 543, 624, 1096 |
| AleI | CACNNNNGTG | 2 cut(s) | 212, 1220 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 399, 431 |
| AluBI | AGCT | 1 cut(s) | 580 |
| AluI | AGCT | 1 cut(s) | 580 |
| Alw21I | GWGCWC | 1 cut(s) | 582 |
| Ama87I | CYCGRG | 3 cut(s) | 320, 1218, 1257 |
| Aor51HI | AGCGCT | 1 cut(s) | 880 |
| ApaI | GGGCCC | 1 cut(s) | 286 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 217, 249 |
| AsiGI | ACCGGT | 1 cut(s) | 968 |
| AspLEI | GCGC | 7 cut(s) | 62, 79, 97, 111, 135, 881, 896 |
| AspS9I | GGNCC | 7 cut(s) | 54, 282, 283, 598, 622, 1210, 1263 |
| AsuC2I | CCSGG | 3 cut(s) | 1148, 1219, 1220 |
| AsuHPI | GGTGA | 4 cut(s) | 38, 142, 416, 416 |
| AvaI | CYCGRG | 3 cut(s) | 320, 1218, 1257 |
| AvaII | GGWCC | 2 cut(s) | 54, 1263 |
| BaeGI | GKGCMC | 2 cut(s) | 286, 516 |
| BanI | GGYRCC | 3 cut(s) | 971, 1007, 1112 |
| BanII | GRGCYC | 2 cut(s) | 286, 582 |
| BauI | CACGAG | 1 cut(s) | 687 |
| BbsI | GAAGAC | 1 cut(s) | 971 |
| Bbv12I | GWGCWC | 1 cut(s) | 582 |
| BbvCI | CCTCAGC | 1 cut(s) | 882 |
| BccI | CCATC | 1 cut(s) | 1019 |
| BceAI | ACGGC | 8 cut(s) | 122, 179, 216, 251, 464, 506, 519, 893 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 656, 682, 690, 716 |
| BciT130I | CCWGG | 5 cut(s) | 365, 455, 545, 626, 1098 |
| BcnI | CCSGG | 3 cut(s) | 1148, 1219, 1220 |
| BfaI | CTAG | 2 cut(s) | 137, 831 |
| BfmI | CTRYAG | 5 cut(s) | 218, 602, 851, 900, 995 |
| BfoI | RGCGCY | 2 cut(s) | 98, 882 |
| Bme1390I | CCNGG | 8 cut(s) | 365, 455, 545, 626, 1098, 1148, 1219, 1220 |
| Bme18I | GGWCC | 2 cut(s) | 54, 1263 |
| BmeT110I | CYCGRG | 3 cut(s) | 320, 1218, 1257 |
| BmgBI | CACGTC | 1 cut(s) | 517 |
| BmgT120I | GGNCC | 7 cut(s) | 54, 282, 283, 598, 622, 1210, 1263 |
| BmrFI | CCNGG | 8 cut(s) | 365, 455, 545, 626, 1098, 1148, 1219, 1220 |
| BmrI | ACTGGG | 3 cut(s) | 288, 1027, 1239 |
| BmsI | GCATC | 5 cut(s) | 253, 664, 1023, 1037, 1300 |
| BmuI | ACTGGG | 3 cut(s) | 288, 1027, 1239 |
| BpiI | GAAGAC | 1 cut(s) | 971 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1142, 1174 |
| BpmI | CTGGAG | 1 cut(s) | 476 |
| Bpu10I | CCTNAGC | 3 cut(s) | 581, 875, 882 |
| BpuEI | CTTGAG | 1 cut(s) | 229 |
| BpuMI | CCSGG | 3 cut(s) | 1148, 1219, 1220 |
| Bsa29I | ATCGAT | 1 cut(s) | 1031 |
| BsaHI | GRCGYC | 2 cut(s) | 551, 1299 |
| BsaWI | WCCGGW | 1 cut(s) | 968 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 404, 434 |
| Bse118I | RCCGGY | 4 cut(s) | 56, 97, 968, 1036 |
| Bse1I | ACTGG | 5 cut(s) | 283, 1022, 1209, 1245, 1302 |
| Bse3DI | GCAATG | 1 cut(s) | 954 |
| BseBI | CCWGG | 5 cut(s) | 365, 455, 545, 626, 1098 |
| BseCI | ATCGAT | 1 cut(s) | 1031 |
| BseGI | GGATG | 2 cut(s) | 268, 1285 |
| BseMI | GCAATG | 1 cut(s) | 954 |
| BseMII | CTCAG | 4 cut(s) | 595, 866, 873, 1175 |
| BseNI | ACTGG | 5 cut(s) | 283, 1022, 1209, 1245, 1302 |
| BseRI | GAGGAG | 3 cut(s) | 272, 306, 602 |
| BseSI | GKGCMC | 2 cut(s) | 286, 516 |
| BseYI | CCCAGC | 1 cut(s) | 1196 |
| BsgI | GTGCAG | 1 cut(s) | 137 |
| Bsh1236I | CGCG | 5 cut(s) | 79, 111, 211, 288, 894 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1041 |
| BshNI | GGYRCC | 3 cut(s) | 971, 1007, 1112 |
| BshTI | ACCGGT | 1 cut(s) | 968 |
| BshVI | ATCGAT | 1 cut(s) | 1031 |
| BsiEI | CGRYCG | 1 cut(s) | 1041 |
| BsiHKAI | GWGCWC | 1 cut(s) | 582 |
| BsiHKCI | CYCGRG | 3 cut(s) | 320, 1218, 1257 |
| BsiSI | CCGG | 6 cut(s) | 57, 98, 969, 1037, 1148, 1219 |
| BslFI | GGGAC | 6 cut(s) | 67, 623, 731, 748, 1174, 1233 |
| BsmFI | GGGAC | 6 cut(s) | 67, 623, 731, 748, 1174, 1233 |
| BsoBI | CYCGRG | 3 cut(s) | 320, 1218, 1257 |
| Bsp120I | GGGCCC | 1 cut(s) | 282 |
| Bsp1286I | GDGCHC | 3 cut(s) | 286, 516, 582 |
| Bsp19I | CCATGG | 1 cut(s) | 975 |
| BspCNI | CTCAG | 4 cut(s) | 594, 867, 874, 1174 |
| BspDI | ATCGAT | 1 cut(s) | 1031 |
| BspFNI | CGCG | 5 cut(s) | 79, 111, 211, 288, 894 |
| BspMAI | CTGCAG | 4 cut(s) | 222, 855, 904, 999 |
| BspT107I | GGYRCC | 3 cut(s) | 971, 1007, 1112 |
| BsrBI | CCGCTC | 4 cut(s) | 436, 574, 727, 1281 |
| BsrDI | GCAATG | 1 cut(s) | 954 |
| BsrFI | RCCGGY | 4 cut(s) | 56, 97, 968, 1036 |
| BsrI | ACTGG | 5 cut(s) | 283, 1022, 1209, 1245, 1302 |
| BssAI | RCCGGY | 4 cut(s) | 56, 97, 968, 1036 |
| BssNI | GRCGYC | 2 cut(s) | 551, 1299 |
| BssSI | CACGAG | 1 cut(s) | 687 |
| BssT1I | CCWWGG | 2 cut(s) | 789, 975 |
| Bst2BI | CACGAG | 1 cut(s) | 687 |
| Bst2UI | CCWGG | 5 cut(s) | 365, 455, 545, 626, 1098 |
| Bst4CI | ACNGT | 3 cut(s) | 404, 671, 738 |
| Bst6I | CTCTTC | 1 cut(s) | 249 |
| BstACI | GRCGYC | 2 cut(s) | 551, 1299 |
| BstDEI | CTNAG | 5 cut(s) | 581, 721, 875, 882, 1161 |
| BstDSI | CCRYGG | 3 cut(s) | 267, 909, 975 |
| BstF5I | GGATG | 2 cut(s) | 268, 1285 |
| BstFNI | CGCG | 5 cut(s) | 79, 111, 211, 288, 894 |
| BstH2I | RGCGCY | 2 cut(s) | 98, 882 |
| BstHHI | GCGC | 7 cut(s) | 62, 79, 97, 111, 135, 881, 896 |
| BstMCI | CGRYCG | 1 cut(s) | 1041 |
| BstNI | CCWGG | 5 cut(s) | 365, 455, 545, 626, 1098 |
| BstNSI | RCATGY | 2 cut(s) | 697, 763 |
| BstSCI | CCNGG | 8 cut(s) | 363, 453, 543, 624, 1096, 1146, 1217, 1218 |
| BstSFI | CTRYAG | 5 cut(s) | 218, 602, 851, 900, 995 |
| BstSLI | GKGCMC | 2 cut(s) | 286, 516 |
| BstUI | CGCG | 5 cut(s) | 79, 111, 211, 288, 894 |
| BstV2I | GAAGAC | 1 cut(s) | 971 |
| Bsu15I | ATCGAT | 1 cut(s) | 1031 |
| BsuTUI | ATCGAT | 1 cut(s) | 1031 |
| BtgI | CCRYGG | 3 cut(s) | 267, 909, 975 |
| BtrI | CACGTC | 1 cut(s) | 517 |
| BtsCI | GGATG | 2 cut(s) | 268, 1285 |
| BtsI | GCAGTG | 5 cut(s) | 69, 128, 256, 966, 1089 |
| BtsIMutI | CAGTG | 6 cut(s) | 69, 128, 256, 966, 1089, 1309 |
| CfoI | GCGC | 7 cut(s) | 62, 79, 97, 111, 135, 881, 896 |
| Cfr10I | RCCGGY | 4 cut(s) | 56, 97, 968, 1036 |
| Cfr13I | GGNCC | 7 cut(s) | 54, 282, 283, 598, 622, 1210, 1263 |
| Cfr9I | CCCGGG | 1 cut(s) | 1218 |
| ClaI | ATCGAT | 1 cut(s) | 1031 |
| CseI | GACGC | 4 cut(s) | 540, 660, 692, 1307 |
| Csp6I | GTAC | 3 cut(s) | 354, 919, 1077 |
| CspAI | ACCGGT | 1 cut(s) | 968 |
| CviAII | CATG | 4 cut(s) | 533, 694, 760, 976 |
| CviQI | GTAC | 3 cut(s) | 354, 919, 1077 |
| DdeI | CTNAG | 5 cut(s) | 581, 721, 875, 882, 1161 |
| EaeI | YGGCCR | 2 cut(s) | 99, 783 |
| Eam1104I | CTCTTC | 1 cut(s) | 249 |
| EarI | CTCTTC | 1 cut(s) | 249 |
| EciI | GGCGGA | 1 cut(s) | 1278 |
| Ecl136II | GAGCTC | 1 cut(s) | 580 |
| Eco130I | CCWWGG | 2 cut(s) | 789, 975 |
| Eco147I | AGGCCT | 1 cut(s) | 190 |
| Eco24I | GRGCYC | 2 cut(s) | 286, 582 |
| Eco47I | GGWCC | 2 cut(s) | 54, 1263 |
| Eco47III | AGCGCT | 1 cut(s) | 880 |
| Eco53kI | GAGCTC | 1 cut(s) | 580 |
| Eco57I | CTGAAG | 3 cut(s) | 481, 797, 1335 |
| Eco88I | CYCGRG | 3 cut(s) | 320, 1218, 1257 |
| EcoICRI | GAGCTC | 1 cut(s) | 580 |
| EcoO109I | RGGNCCY | 1 cut(s) | 282 |
| EcoRII | CCWGG | 5 cut(s) | 363, 453, 543, 624, 1096 |
| EcoT14I | CCWWGG | 2 cut(s) | 789, 975 |
| EcoT38I | GRGCYC | 2 cut(s) | 286, 582 |
| ErhI | CCWWGG | 2 cut(s) | 789, 975 |
| FaeI | CATG | 4 cut(s) | 536, 697, 763, 979 |
| FaiI | YATR | 6 cut(s) | 104, 155, 534, 695, 761, 977 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 638, 670, 704, 736 |
| FaqI | GGGAC | 6 cut(s) | 67, 623, 731, 748, 1174, 1233 |
| FatI | CATG | 4 cut(s) | 532, 693, 759, 975 |
| FokI | GGATG | 2 cut(s) | 275, 1272 |
| FriOI | GRGCYC | 2 cut(s) | 286, 582 |
| FspBI | CTAG | 2 cut(s) | 137, 831 |
| GlaI | GCGC | 7 cut(s) | 61, 78, 96, 110, 134, 880, 895 |
| GsaI | CCCAGC | 1 cut(s) | 1200 |
| GsuI | CTGGAG | 1 cut(s) | 476 |
| HaeII | RGCGCY | 2 cut(s) | 98, 882 |
| HapII | CCGG | 6 cut(s) | 57, 98, 969, 1037, 1148, 1219 |
| HgaI | GACGC | 4 cut(s) | 540, 660, 692, 1307 |
| HhaI | GCGC | 7 cut(s) | 62, 79, 97, 111, 135, 881, 896 |
| Hin1I | GRCGYC | 2 cut(s) | 551, 1299 |
| Hin1II | CATG | 4 cut(s) | 536, 697, 763, 979 |
| Hin6I | GCGC | 7 cut(s) | 60, 77, 95, 109, 133, 879, 894 |
| HinP1I | GCGC | 7 cut(s) | 60, 77, 95, 109, 133, 879, 894 |
| HincII | GTYRAC | 2 cut(s) | 236, 484 |
| HindII | GTYRAC | 2 cut(s) | 236, 484 |
| HinfI | GANTC | 7 cut(s) | 242, 368, 821, 914, 1157, 1168, 1178 |
| HpaI | GTTAAC | 1 cut(s) | 484 |
| HpaII | CCGG | 6 cut(s) | 57, 98, 969, 1037, 1148, 1219 |
| HphI | GGTGA | 4 cut(s) | 38, 142, 416, 416 |
| Hpy166II | GTNNAC | 3 cut(s) | 236, 407, 484 |
| Hpy188I | TCNGA | 5 cut(s) | 396, 471, 1068, 1183, 1267 |
| Hpy188III | TCNNGA | 3 cut(s) | 47, 320, 555 |
| Hpy8I | GTNNAC | 3 cut(s) | 236, 407, 484 |
| Hpy99I | CGWCG | 3 cut(s) | 200, 521, 654 |
| HpyAV | CCTTC | 9 cut(s) | 137, 295, 505, 821, 937, 997, 1018, 1103, 1310 |
| HpyCH4III | ACNGT | 3 cut(s) | 404, 671, 738 |
| HpyCH4IV | ACGT | 1 cut(s) | 516 |
| HpyCH4V | TGCA | 7 cut(s) | 118, 220, 532, 677, 853, 902, 997 |
| HpyF3I | CTNAG | 5 cut(s) | 581, 721, 875, 882, 1161 |
| HpySE526I | ACGT | 1 cut(s) | 516 |
| Hsp92I | GRCGYC | 2 cut(s) | 551, 1299 |
| Hsp92II | CATG | 4 cut(s) | 536, 697, 763, 979 |
| HspAI | GCGC | 7 cut(s) | 60, 77, 95, 109, 133, 879, 894 |
| KroI | GCCGGC | 1 cut(s) | 97 |
| KroNI | GCCGGC | 1 cut(s) | 99 |
| KspAI | GTTAAC | 1 cut(s) | 484 |
| LmnI | GCTCC | 6 cut(s) | 166, 319, 331, 577, 751, 888 |
| LweI | GCATC | 5 cut(s) | 253, 664, 1023, 1037, 1300 |
| MaeI | CTAG | 2 cut(s) | 137, 831 |
| MaeII | ACGT | 1 cut(s) | 516 |
| MaeIII | GTNAC | 5 cut(s) | 26, 148, 337, 359, 1200 |
| MbiI | CCGCTC | 4 cut(s) | 436, 574, 727, 1281 |
| MboII | GAAGA | 5 cut(s) | 133, 266, 310, 976, 1066 |
| MhlI | GDGCHC | 3 cut(s) | 286, 516, 582 |
| MlyI | GAGTC | 7 cut(s) | 236, 362, 830, 923, 1151, 1162, 1187 |
| MmeI | TCCRAC | 4 cut(s) | 505, 729, 1091, 1290 |
| MroNI | GCCGGC | 1 cut(s) | 97 |
| MseI | TTAA | 2 cut(s) | 483, 711 |
| MslI | CAYNNNNRTG | 3 cut(s) | 21, 212, 1220 |
| MspA1I | CMGCKG | 2 cut(s) | 817, 1165 |
| MspI | CCGG | 6 cut(s) | 57, 98, 969, 1037, 1148, 1219 |
| MspR9I | CCNGG | 8 cut(s) | 365, 455, 545, 626, 1098, 1148, 1219, 1220 |
| MvaI | CCWGG | 5 cut(s) | 365, 455, 545, 626, 1098 |
| MvnI | CGCG | 5 cut(s) | 79, 111, 211, 288, 894 |
| NaeI | GCCGGC | 1 cut(s) | 99 |
| NciI | CCSGG | 3 cut(s) | 1148, 1219, 1220 |
| NcoI | CCATGG | 1 cut(s) | 975 |
| NgoMIV | GCCGGC | 1 cut(s) | 97 |
| NlaIII | CATG | 4 cut(s) | 536, 697, 763, 979 |
| NmeAIII | GCCGAG | 2 cut(s) | 412, 865 |
| NmuCI | GTSAC | 4 cut(s) | 26, 148, 337, 359 |
| NspI | RCATGY | 2 cut(s) | 697, 763 |
| OliI | CACNNNNGTG | 2 cut(s) | 212, 1220 |
| PaeI | GCATGC | 1 cut(s) | 697 |
| PceI | AGGCCT | 1 cut(s) | 190 |
| PciI | ACATGT | 1 cut(s) | 759 |
| PdiI | GCCGGC | 1 cut(s) | 99 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1017 |
| PfoI | TCCNGGA | 1 cut(s) | 1146 |
| PinAI | ACCGGT | 1 cut(s) | 968 |
| PleI | GAGTC | 7 cut(s) | 236, 362, 829, 922, 1151, 1162, 1186 |
| PpsI | GAGTC | 7 cut(s) | 236, 362, 829, 922, 1151, 1162, 1186 |
| PscI | ACATGT | 1 cut(s) | 759 |
| Psp124BI | GAGCTC | 1 cut(s) | 582 |
| Psp6I | CCWGG | 5 cut(s) | 363, 453, 543, 624, 1096 |
| PspFI | CCCAGC | 1 cut(s) | 1196 |
| PspGI | CCWGG | 5 cut(s) | 363, 453, 543, 624, 1096 |
| PspOMI | GGGCCC | 1 cut(s) | 282 |
| PspPI | GGNCC | 7 cut(s) | 54, 282, 283, 598, 622, 1210, 1263 |
| PstI | CTGCAG | 4 cut(s) | 222, 855, 904, 999 |
| RsaI | GTAC | 3 cut(s) | 355, 920, 1078 |
| RsaNI | GTAC | 3 cut(s) | 354, 919, 1077 |
| RseI | CAYNNNNRTG | 3 cut(s) | 21, 212, 1220 |
| SacI | GAGCTC | 1 cut(s) | 582 |
| SaqAI | TTAA | 2 cut(s) | 483, 711 |
| Sau96I | GGNCC | 7 cut(s) | 54, 282, 283, 598, 622, 1210, 1263 |
| SchI | GAGTC | 7 cut(s) | 236, 362, 830, 923, 1151, 1162, 1187 |
| ScrFI | CCNGG | 8 cut(s) | 365, 455, 545, 626, 1098, 1148, 1219, 1220 |
| SduI | GDGCHC | 3 cut(s) | 286, 516, 582 |
| SfaNI | GCATC | 5 cut(s) | 253, 664, 1023, 1037, 1300 |
| SfcI | CTRYAG | 5 cut(s) | 218, 602, 851, 900, 995 |
| SinI | GGWCC | 2 cut(s) | 54, 1263 |
| SmaI | CCCGGG | 1 cut(s) | 1220 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 21, 212, 1220 |
| SmlI | CTYRAG | 1 cut(s) | 244 |
| SmoI | CTYRAG | 1 cut(s) | 244 |
| SphI | GCATGC | 1 cut(s) | 697 |
| SseBI | AGGCCT | 1 cut(s) | 190 |
| SspMI | CTAG | 2 cut(s) | 137, 831 |
| SstI | GAGCTC | 1 cut(s) | 582 |
| StuI | AGGCCT | 1 cut(s) | 190 |
| StyD4I | CCNGG | 8 cut(s) | 363, 453, 543, 624, 1096, 1146, 1217, 1218 |
| StyI | CCWWGG | 2 cut(s) | 789, 975 |
| TaaI | ACNGT | 3 cut(s) | 404, 671, 738 |
| TaiI | ACGT | 1 cut(s) | 519 |
| TaqI | TCGA | 3 cut(s) | 240, 1014, 1031 |
| TaqII | GACCGA | 1 cut(s) | 968 |
| Tru1I | TTAA | 2 cut(s) | 483, 711 |
| Tru9I | TTAA | 2 cut(s) | 483, 711 |
| TscAI | CASTG | 6 cut(s) | 69, 135, 256, 966, 1096, 1309 |
| TseFI | GTSAC | 4 cut(s) | 26, 148, 337, 359 |
| Tsp45I | GTSAC | 4 cut(s) | 26, 148, 337, 359 |
| TspDTI | ATGAA | 1 cut(s) | 549 |
| TspMI | CCCGGG | 1 cut(s) | 1218 |
| TspRI | CASTG | 6 cut(s) | 69, 135, 256, 966, 1096, 1309 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1017 |
| VpaK11BI | GGWCC | 2 cut(s) | 54, 1263 |
| XceI | RCATGY | 2 cut(s) | 697, 763 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 17, 160, 982 |
| XmaI | CCCGGG | 1 cut(s) | 1218 |
| XspI | CTAG | 2 cut(s) | 137, 831 |