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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 265 |
| Acc36I | ACCTGC | 1 cut(s) | 265 |
| AccB1I | GGYRCC | 4 cut(s) | 163, 302, 367, 669 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 732 |
| AccBSI | CCGCTC | 2 cut(s) | 667, 745 |
| AccI | GTMKAC | 1 cut(s) | 572 |
| AccII | CGCG | 3 cut(s) | 54, 81, 708 |
| AclWI | GGATC | 2 cut(s) | 84, 143 |
| AcoI | YGGCCR | 1 cut(s) | 495 |
| AcsI | RAATTY | 1 cut(s) | 431 |
| AcyI | GRCGYC | 4 cut(s) | 164, 569, 670, 702 |
| AfaI | GTAC | 1 cut(s) | 113 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 377, 582, 583, 679, 732 |
| AgsI | TTSAA | 1 cut(s) | 731 |
| AjnI | CCWGG | 4 cut(s) | 34, 159, 561, 576 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 83, 115 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 422, 454 |
| AluBI | AGCT | 7 cut(s) | 332, 427, 519, 556, 592, 598, 652 |
| AluI | AGCT | 7 cut(s) | 332, 427, 519, 556, 592, 598, 652 |
| Alw26I | GTCTC | 1 cut(s) | 623 |
| AlwI | GGATC | 2 cut(s) | 84, 143 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 160, 185 |
| Ama87I | CYCGRG | 3 cut(s) | 458, 582, 740 |
| AoxI | GGCC | 4 cut(s) | 129, 287, 321, 495 |
| ApeKI | GCWGC | 6 cut(s) | 203, 337, 395, 547, 592, 595 |
| ApoI | RAATTY | 1 cut(s) | 431 |
| AspLEI | GCGC | 4 cut(s) | 83, 166, 191, 672 |
| AspS9I | GGNCC | 2 cut(s) | 130, 736 |
| AsuHPI | GGTGA | 2 cut(s) | 289, 355 |
| AvaI | CYCGRG | 3 cut(s) | 458, 582, 740 |
| AvaII | GGWCC | 1 cut(s) | 736 |
| BanI | GGYRCC | 4 cut(s) | 163, 302, 367, 669 |
| BauI | CACGAG | 1 cut(s) | 551 |
| BbvCI | CCTCAGC | 1 cut(s) | 599 |
| BbvI | GCAGC | 6 cut(s) | 190, 349, 382, 534, 579, 607 |
| BccI | CCATC | 2 cut(s) | 121, 470 |
| BceAI | ACGGC | 1 cut(s) | 510 |
| BciT130I | CCWGG | 4 cut(s) | 36, 161, 563, 578 |
| BcoDI | GTCTC | 1 cut(s) | 623 |
| BfaI | CTAG | 3 cut(s) | 9, 48, 763 |
| BfmI | CTRYAG | 2 cut(s) | 593, 720 |
| BfoI | RGCGCY | 2 cut(s) | 167, 673 |
| BfuAI | ACCTGC | 1 cut(s) | 265 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 311 |
| Bme1390I | CCNGG | 4 cut(s) | 36, 161, 563, 578 |
| Bme18I | GGWCC | 1 cut(s) | 736 |
| BmeT110I | CYCGRG | 3 cut(s) | 458, 582, 740 |
| BmgT120I | GGNCC | 2 cut(s) | 130, 736 |
| BmiI | GGNNCC | 7 cut(s) | 165, 246, 270, 304, 369, 671, 737 |
| BmrFI | CCNGG | 4 cut(s) | 36, 161, 563, 578 |
| BmsI | GCATC | 1 cut(s) | 541 |
| BpmI | CTGGAG | 1 cut(s) | 228 |
| Bpu10I | CCTNAGC | 1 cut(s) | 599 |
| BpuEI | CTTGAG | 1 cut(s) | 268 |
| BsaAI | YACGTR | 1 cut(s) | 757 |
| BsaHI | GRCGYC | 4 cut(s) | 164, 569, 670, 702 |
| BsaI | GGTCTC | 1 cut(s) | 623 |
| BsaJI | CCNNGG | 5 cut(s) | 159, 168, 576, 678, 706 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 95, 125 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 377, 582, 583, 679, 732 |
| Bse118I | RCCGGY | 1 cut(s) | 340 |
| Bse1I | ACTGG | 1 cut(s) | 190 |
| BseBI | CCWGG | 4 cut(s) | 36, 161, 563, 578 |
| BseDI | CCNNGG | 5 cut(s) | 159, 168, 576, 678, 706 |
| BseGI | GGATG | 1 cut(s) | 481 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 377, 582, 583, 679, 732 |
| BseMII | CTCAG | 1 cut(s) | 590 |
| BseNI | ACTGG | 1 cut(s) | 190 |
| BseRI | GAGGAG | 1 cut(s) | 620 |
| BseXI | GCAGC | 6 cut(s) | 190, 349, 382, 534, 579, 607 |
| BseYI | CCCAGC | 2 cut(s) | 132, 359 |
| BsgI | GTGCAG | 1 cut(s) | 533 |
| Bsh1236I | CGCG | 3 cut(s) | 54, 81, 708 |
| BshFI | GGCC | 4 cut(s) | 131, 289, 323, 497 |
| BshNI | GGYRCC | 4 cut(s) | 163, 302, 367, 669 |
| BsiHKCI | CYCGRG | 3 cut(s) | 458, 582, 740 |
| BsiSI | CCGG | 1 cut(s) | 341 |
| BslFI | GGGAC | 3 cut(s) | 142, 493, 749 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 377, 582, 583, 679, 732 |
| BsmAI | GTCTC | 1 cut(s) | 623 |
| BsmFI | GGGAC | 3 cut(s) | 142, 493, 749 |
| BsmI | GAATGC | 2 cut(s) | 59, 692 |
| BsnI | GGCC | 4 cut(s) | 131, 289, 323, 497 |
| Bso31I | GGTCTC | 1 cut(s) | 623 |
| BsoBI | CYCGRG | 3 cut(s) | 458, 582, 740 |
| Bsp143I | GATC | 3 cut(s) | 76, 148, 609 |
| Bsp68I | TCGCGA | 1 cut(s) | 54 |
| BspANI | GGCC | 4 cut(s) | 131, 289, 323, 497 |
| BspCNI | CTCAG | 1 cut(s) | 591 |
| BspFNI | CGCG | 3 cut(s) | 54, 81, 708 |
| BspLI | GGNNCC | 7 cut(s) | 165, 246, 270, 304, 369, 671, 737 |
| BspMAI | CTGCAG | 1 cut(s) | 597 |
| BspMI | ACCTGC | 1 cut(s) | 265 |
| BspPI | GGATC | 2 cut(s) | 84, 143 |
| BspT107I | GGYRCC | 4 cut(s) | 163, 302, 367, 669 |
| BspTNI | GGTCTC | 1 cut(s) | 623 |
| BsrBI | CCGCTC | 2 cut(s) | 667, 745 |
| BsrFI | RCCGGY | 1 cut(s) | 340 |
| BsrI | ACTGG | 1 cut(s) | 190 |
| BssAI | RCCGGY | 1 cut(s) | 340 |
| BssECI | CCNNGG | 5 cut(s) | 159, 168, 576, 678, 706 |
| BssMI | GATC | 3 cut(s) | 76, 148, 609 |
| BssNI | GRCGYC | 4 cut(s) | 164, 569, 670, 702 |
| BssSI | CACGAG | 1 cut(s) | 551 |
| BssT1I | CCWWGG | 1 cut(s) | 678 |
| Bst2BI | CACGAG | 1 cut(s) | 551 |
| Bst2UI | CCWGG | 4 cut(s) | 36, 161, 563, 578 |
| Bst4CI | ACNGT | 5 cut(s) | 142, 256, 349, 484, 721 |
| BstACI | GRCGYC | 4 cut(s) | 164, 569, 670, 702 |
| BstBAI | YACGTR | 1 cut(s) | 757 |
| BstC8I | GCNNGC | 4 cut(s) | 330, 470, 654, 706 |
| BstDEI | CTNAG | 1 cut(s) | 599 |
| BstDSI | CCRYGG | 2 cut(s) | 168, 706 |
| BstEII | GGTNACC | 1 cut(s) | 277 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 677 |
| BstF5I | GGATG | 1 cut(s) | 481 |
| BstFNI | CGCG | 3 cut(s) | 54, 81, 708 |
| BstH2I | RGCGCY | 2 cut(s) | 167, 673 |
| BstHHI | GCGC | 4 cut(s) | 83, 166, 191, 672 |
| BstKTI | GATC | 3 cut(s) | 79, 151, 612 |
| BstMAI | GTCTC | 1 cut(s) | 623 |
| BstMBI | GATC | 3 cut(s) | 76, 148, 609 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 311, 320, 329, 334, 401, 553, 701 |
| BstNI | CCWGG | 4 cut(s) | 36, 161, 563, 578 |
| BstNSI | RCATGY | 1 cut(s) | 112 |
| BstPI | GGTNACC | 1 cut(s) | 277 |
| BstSCI | CCNGG | 4 cut(s) | 34, 159, 561, 576 |
| BstSFI | CTRYAG | 2 cut(s) | 593, 720 |
| BstUI | CGCG | 3 cut(s) | 54, 81, 708 |
| BstV1I | GCAGC | 6 cut(s) | 190, 349, 382, 534, 579, 607 |
| BsuRI | GGCC | 4 cut(s) | 131, 289, 323, 497 |
| BtgI | CCRYGG | 2 cut(s) | 168, 706 |
| BtsCI | GGATG | 1 cut(s) | 481 |
| BtuMI | TCGCGA | 1 cut(s) | 54 |
| BveI | ACCTGC | 1 cut(s) | 265 |
| Cac8I | GCNNGC | 4 cut(s) | 330, 470, 654, 706 |
| CaiI | CAGNNNCTG | 2 cut(s) | 160, 185 |
| CfoI | GCGC | 4 cut(s) | 83, 166, 191, 672 |
| Cfr10I | RCCGGY | 1 cut(s) | 340 |
| Cfr13I | GGNCC | 2 cut(s) | 130, 736 |
| Cfr42I | CCGCGG | 1 cut(s) | 709 |
| CseI | GACGC | 3 cut(s) | 558, 701, 710 |
| Csp6I | GTAC | 1 cut(s) | 112 |
| CviAII | CATG | 1 cut(s) | 109 |
| CviQI | GTAC | 1 cut(s) | 112 |
| DdeI | CTNAG | 1 cut(s) | 599 |
| DinI | GGCGCC | 2 cut(s) | 165, 671 |
| DpnI | GATC | 3 cut(s) | 78, 150, 611 |
| DpnII | GATC | 3 cut(s) | 76, 148, 609 |
| EaeI | YGGCCR | 1 cut(s) | 495 |
| Eco130I | CCWWGG | 1 cut(s) | 678 |
| Eco147I | AGGCCT | 1 cut(s) | 289 |
| Eco31I | GGTCTC | 1 cut(s) | 623 |
| Eco47I | GGWCC | 1 cut(s) | 736 |
| Eco88I | CYCGRG | 3 cut(s) | 458, 582, 740 |
| Eco91I | GGTNACC | 1 cut(s) | 277 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 677 |
| EcoO109I | RGGNCCY | 1 cut(s) | 736 |
| EcoO65I | GGTNACC | 1 cut(s) | 277 |
| EcoRII | CCWGG | 4 cut(s) | 34, 159, 561, 576 |
| EcoT14I | CCWWGG | 1 cut(s) | 678 |
| EgeI | GGCGCC | 2 cut(s) | 165, 671 |
| EheI | GGCGCC | 2 cut(s) | 165, 671 |
| ErhI | CCWWGG | 1 cut(s) | 678 |
| FaeI | CATG | 1 cut(s) | 112 |
| FaiI | YATR | 6 cut(s) | 74, 110, 402, 423, 624, 698 |
| FaqI | GGGAC | 3 cut(s) | 142, 493, 749 |
| FatI | CATG | 1 cut(s) | 108 |
| FauI | CCCGC | 2 cut(s) | 461, 713 |
| FblI | GTMKAC | 1 cut(s) | 572 |
| FokI | GGATG | 1 cut(s) | 488 |
| FspBI | CTAG | 3 cut(s) | 9, 48, 763 |
| GlaI | GCGC | 4 cut(s) | 82, 165, 190, 671 |
| GsaI | CCCAGC | 2 cut(s) | 136, 363 |
| GsuI | CTGGAG | 1 cut(s) | 228 |
| HaeII | RGCGCY | 2 cut(s) | 167, 673 |
| HaeIII | GGCC | 4 cut(s) | 131, 289, 323, 497 |
| HapII | CCGG | 1 cut(s) | 341 |
| HgaI | GACGC | 3 cut(s) | 558, 701, 710 |
| HhaI | GCGC | 4 cut(s) | 83, 166, 191, 672 |
| Hin1I | GRCGYC | 4 cut(s) | 164, 569, 670, 702 |
| Hin1II | CATG | 1 cut(s) | 112 |
| Hin6I | GCGC | 4 cut(s) | 81, 164, 189, 670 |
| HinP1I | GCGC | 4 cut(s) | 81, 164, 189, 670 |
| HincII | GTYRAC | 2 cut(s) | 573, 717 |
| HindII | GTYRAC | 2 cut(s) | 573, 717 |
| HinfI | GANTC | 1 cut(s) | 386 |
| HpaII | CCGG | 1 cut(s) | 341 |
| HphI | GGTGA | 2 cut(s) | 289, 355 |
| Hpy166II | GTNNAC | 2 cut(s) | 573, 717 |
| Hpy188I | TCNGA | 1 cut(s) | 492 |
| Hpy188III | TCNNGA | 1 cut(s) | 53 |
| Hpy8I | GTNNAC | 2 cut(s) | 573, 717 |
| Hpy99I | CGWCG | 3 cut(s) | 496, 574, 695 |
| HpyAV | CCTTC | 3 cut(s) | 214, 313, 637 |
| HpyCH4III | ACNGT | 5 cut(s) | 142, 256, 349, 484, 721 |
| HpyCH4IV | ACGT | 1 cut(s) | 756 |
| HpyCH4V | TGCA | 2 cut(s) | 550, 595 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 311, 320, 329, 334, 401, 553, 701 |
| HpyF3I | CTNAG | 1 cut(s) | 599 |
| HpySE526I | ACGT | 1 cut(s) | 756 |
| Hsp92I | GRCGYC | 4 cut(s) | 164, 569, 670, 702 |
| Hsp92II | CATG | 1 cut(s) | 112 |
| HspAI | GCGC | 4 cut(s) | 81, 164, 189, 670 |
| KasI | GGCGCC | 2 cut(s) | 163, 669 |
| KspI | CCGCGG | 1 cut(s) | 709 |
| Kzo9I | GATC | 3 cut(s) | 76, 148, 609 |
| LmnI | GCTCC | 3 cut(s) | 213, 268, 337 |
| Lsp1109I | GCAGC | 6 cut(s) | 190, 349, 382, 534, 579, 607 |
| LweI | GCATC | 1 cut(s) | 541 |
| MaeI | CTAG | 3 cut(s) | 9, 48, 763 |
| MaeII | ACGT | 1 cut(s) | 756 |
| MaeIII | GTNAC | 4 cut(s) | 38, 250, 277, 343 |
| MalI | GATC | 3 cut(s) | 78, 150, 611 |
| MbiI | CCGCTC | 2 cut(s) | 667, 745 |
| MboI | GATC | 3 cut(s) | 76, 148, 609 |
| MboII | GAAGA | 2 cut(s) | 328, 479 |
| MluCI | AATT | 1 cut(s) | 431 |
| Mly113I | GGCGCC | 2 cut(s) | 164, 670 |
| MlyI | GAGTC | 1 cut(s) | 380 |
| MmeI | TCCRAC | 2 cut(s) | 246, 515 |
| MspA1I | CMGCKG | 3 cut(s) | 119, 598, 708 |
| MspI | CCGG | 1 cut(s) | 341 |
| MspR9I | CCNGG | 4 cut(s) | 36, 161, 563, 578 |
| Mva1269I | GAATGC | 2 cut(s) | 59, 692 |
| MvaI | CCWGG | 4 cut(s) | 36, 161, 563, 578 |
| MvnI | CGCG | 3 cut(s) | 54, 81, 708 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 311, 320, 329, 334, 401, 553, 701 |
| NarI | GGCGCC | 2 cut(s) | 164, 670 |
| NdeII | GATC | 3 cut(s) | 76, 148, 609 |
| NlaIII | CATG | 1 cut(s) | 112 |
| NlaIV | GGNNCC | 7 cut(s) | 165, 246, 270, 304, 369, 671, 737 |
| NmeAIII | GCCGAG | 1 cut(s) | 500 |
| NmuCI | GTSAC | 2 cut(s) | 277, 343 |
| NruI | TCGCGA | 1 cut(s) | 54 |
| NspI | RCATGY | 1 cut(s) | 112 |
| PaeR7I | CTCGAG | 1 cut(s) | 740 |
| PaqCI | CACCTGC | 1 cut(s) | 265 |
| PceI | AGGCCT | 1 cut(s) | 289 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 549, 747 |
| PctI | GAATGC | 2 cut(s) | 59, 692 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 732 |
| PleI | GAGTC | 1 cut(s) | 380 |
| PluTI | GGCGCC | 2 cut(s) | 167, 673 |
| PpsI | GAGTC | 1 cut(s) | 380 |
| Ppu21I | YACGTR | 1 cut(s) | 757 |
| PpuMI | RGGWCCY | 1 cut(s) | 736 |
| Psp5II | RGGWCCY | 1 cut(s) | 736 |
| Psp6I | CCWGG | 4 cut(s) | 34, 159, 561, 576 |
| PspEI | GGTNACC | 1 cut(s) | 277 |
| PspFI | CCCAGC | 2 cut(s) | 132, 359 |
| PspGI | CCWGG | 4 cut(s) | 34, 159, 561, 576 |
| PspN4I | GGNNCC | 7 cut(s) | 165, 246, 270, 304, 369, 671, 737 |
| PspPI | GGNCC | 2 cut(s) | 130, 736 |
| PspPPI | RGGWCCY | 1 cut(s) | 736 |
| PspXI | VCTCGAGB | 1 cut(s) | 740 |
| PstI | CTGCAG | 1 cut(s) | 597 |
| PstNI | CAGNNNCTG | 2 cut(s) | 160, 185 |
| PvuII | CAGCTG | 1 cut(s) | 598 |
| RruI | TCGCGA | 1 cut(s) | 54 |
| RsaI | GTAC | 1 cut(s) | 113 |
| RsaNI | GTAC | 1 cut(s) | 112 |
| SacII | CCGCGG | 1 cut(s) | 709 |
| SalI | GTCGAC | 1 cut(s) | 571 |
| Sau3AI | GATC | 3 cut(s) | 76, 148, 609 |
| Sau96I | GGNCC | 2 cut(s) | 130, 736 |
| SchI | GAGTC | 1 cut(s) | 380 |
| ScrFI | CCNGG | 4 cut(s) | 36, 161, 563, 578 |
| SfaNI | GCATC | 1 cut(s) | 541 |
| SfcI | CTRYAG | 2 cut(s) | 593, 720 |
| SfoI | GGCGCC | 2 cut(s) | 165, 671 |
| Sfr274I | CTCGAG | 1 cut(s) | 740 |
| Sfr303I | CCGCGG | 1 cut(s) | 709 |
| SgrBI | CCGCGG | 1 cut(s) | 709 |
| SinI | GGWCC | 1 cut(s) | 736 |
| SlaI | CTCGAG | 1 cut(s) | 740 |
| SmlI | CTYRAG | 2 cut(s) | 283, 740 |
| SmoI | CTYRAG | 2 cut(s) | 283, 740 |
| Sse9I | AATT | 1 cut(s) | 431 |
| SseBI | AGGCCT | 1 cut(s) | 289 |
| SspDI | GGCGCC | 2 cut(s) | 163, 669 |
| SspMI | CTAG | 3 cut(s) | 9, 48, 763 |
| StuI | AGGCCT | 1 cut(s) | 289 |
| StyD4I | CCNGG | 4 cut(s) | 34, 159, 561, 576 |
| StyI | CCWWGG | 1 cut(s) | 678 |
| TaaI | ACNGT | 5 cut(s) | 142, 256, 349, 484, 721 |
| TaiI | ACGT | 1 cut(s) | 759 |
| TaqI | TCGA | 4 cut(s) | 63, 572, 663, 741 |
| TasI | AATT | 1 cut(s) | 431 |
| TauI | GCSGC | 6 cut(s) | 119, 274, 373, 569, 670, 711 |
| TseFI | GTSAC | 2 cut(s) | 277, 343 |
| TseI | GCWGC | 6 cut(s) | 203, 337, 395, 547, 592, 595 |
| Tsp45I | GTSAC | 2 cut(s) | 277, 343 |
| TspDTI | ATGAA | 1 cut(s) | 104 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 732 |
| VpaK11BI | GGWCC | 1 cut(s) | 736 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 677 |
| XapI | RAATTY | 1 cut(s) | 431 |
| XceI | RCATGY | 1 cut(s) | 112 |
| XhoI | CTCGAG | 1 cut(s) | 740 |
| XmiI | GTMKAC | 1 cut(s) | 572 |
| XspI | CTAG | 3 cut(s) | 9, 48, 763 |