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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 946 |
| AatII | GACGTC | 1 cut(s) | 1029 |
| Acc36I | ACCTGC | 1 cut(s) | 946 |
| AccB1I | GGYRCC | 2 cut(s) | 236, 827 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 455 |
| AccBSI | CCGCTC | 3 cut(s) | 167, 737, 1207 |
| AccII | CGCG | 6 cut(s) | 529, 531, 546, 687, 689, 1265 |
| AclWI | GGATC | 2 cut(s) | 690, 1228 |
| AcoI | YGGCCR | 3 cut(s) | 273, 400, 732 |
| AcuI | CTGAAG | 2 cut(s) | 311, 1109 |
| AcyI | GRCGYC | 2 cut(s) | 828, 1026 |
| AfaI | GTAC | 2 cut(s) | 374, 1364 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 179, 186, 427, 455, 1005, 1198, 1243 |
| AflII | CTTAAG | 1 cut(s) | 1238 |
| AgsI | TTSAA | 5 cut(s) | 85, 101, 283, 520, 1348 |
| AhlI | ACTAGT | 1 cut(s) | 103 |
| AjnI | CCWGG | 4 cut(s) | 310, 402, 1176, 1409 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 689, 721 |
| AluBI | AGCT | 1 cut(s) | 1394 |
| AluI | AGCT | 1 cut(s) | 1394 |
| Alw21I | GWGCWC | 1 cut(s) | 387 |
| Alw26I | GTCTC | 3 cut(s) | 422, 779, 1052 |
| Alw44I | GTGCAC | 1 cut(s) | 383 |
| AlwI | GGATC | 2 cut(s) | 690, 1228 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 766 |
| Ama87I | CYCGRG | 1 cut(s) | 1197 |
| ApaI | GGGCCC | 2 cut(s) | 897, 1072 |
| ApaLI | GTGCAC | 1 cut(s) | 383 |
| ApeKI | GCWGC | 5 cut(s) | 377, 564, 799, 848, 1385 |
| AseI | ATTAAT | 1 cut(s) | 1116 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1343 |
| AspLEI | GCGC | 5 cut(s) | 531, 689, 830, 1104, 1400 |
| AspS9I | GGNCC | 8 cut(s) | 260, 431, 508, 893, 894, 997, 1068, 1069 |
| AsuC2I | CCSGG | 4 cut(s) | 181, 642, 1198, 1199 |
| AsuHPI | GGTGA | 7 cut(s) | 242, 331, 784, 874, 970, 1061, 1282 |
| AvaI | CYCGRG | 1 cut(s) | 1197 |
| AvaII | GGWCC | 1 cut(s) | 431 |
| BaeGI | GKGCMC | 4 cut(s) | 387, 879, 897, 1072 |
| BalI | TGGCCA | 1 cut(s) | 402 |
| BanI | GGYRCC | 2 cut(s) | 236, 827 |
| BanII | GRGCYC | 2 cut(s) | 897, 1072 |
| BauI | CACGAG | 1 cut(s) | 386 |
| Bbv12I | GWGCWC | 1 cut(s) | 387 |
| BbvI | GCAGC | 5 cut(s) | 364, 551, 786, 835, 1397 |
| BccI | CCATC | 6 cut(s) | 180, 188, 227, 449, 827, 894 |
| BceAI | ACGGC | 4 cut(s) | 365, 642, 914, 1316 |
| BciT130I | CCWGG | 4 cut(s) | 312, 404, 1178, 1411 |
| BcnI | CCSGG | 4 cut(s) | 181, 642, 1198, 1199 |
| BcoDI | GTCTC | 3 cut(s) | 422, 779, 1052 |
| BcuI | ACTAGT | 1 cut(s) | 103 |
| BfaI | CTAG | 5 cut(s) | 38, 104, 132, 227, 587 |
| BfmI | CTRYAG | 2 cut(s) | 147, 1001 |
| BfoI | RGCGCY | 1 cut(s) | 831 |
| BfrI | CTTAAG | 1 cut(s) | 1238 |
| BfuAI | ACCTGC | 1 cut(s) | 946 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1080 |
| BglII | AGATCT | 1 cut(s) | 589 |
| Bme1390I | CCNGG | 8 cut(s) | 181, 312, 404, 642, 1178, 1198, 1199, 1411 |
| Bme18I | GGWCC | 1 cut(s) | 431 |
| BmeT110I | CYCGRG | 1 cut(s) | 1197 |
| BmgT120I | GGNCC | 8 cut(s) | 260, 431, 508, 893, 894, 997, 1068, 1069 |
| BmrFI | CCNGG | 8 cut(s) | 181, 312, 404, 642, 1178, 1198, 1199, 1411 |
| BmrI | ACTGGG | 1 cut(s) | 615 |
| BmsI | GCATC | 2 cut(s) | 652, 1042 |
| BmuI | ACTGGG | 1 cut(s) | 615 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 338, 370 |
| BpmI | CTGGAG | 1 cut(s) | 333 |
| Bpu10I | CCTNAGC | 1 cut(s) | 422 |
| BpuEI | CTTGAG | 1 cut(s) | 985 |
| BpuMI | CCSGG | 4 cut(s) | 181, 642, 1198, 1199 |
| BsaHI | GRCGYC | 2 cut(s) | 828, 1026 |
| BsaJI | CCNNGG | 6 cut(s) | 159, 180, 403, 1196, 1197, 1263 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 701, 731 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 179, 186, 427, 455, 1005, 1198, 1243 |
| Bse1I | ACTGG | 4 cut(s) | 456, 527, 610, 1075 |
| BseBI | CCWGG | 4 cut(s) | 312, 404, 1178, 1411 |
| BseDI | CCNNGG | 6 cut(s) | 159, 180, 403, 1196, 1197, 1263 |
| BseGI | GGATG | 4 cut(s) | 37, 191, 199, 460 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 179, 186, 427, 455, 1005, 1198, 1243 |
| BseMII | CTCAG | 4 cut(s) | 752, 773, 774, 1205 |
| BseNI | ACTGG | 4 cut(s) | 456, 527, 610, 1075 |
| BseRI | GAGGAG | 2 cut(s) | 1322, 1327 |
| BseSI | GKGCMC | 4 cut(s) | 387, 879, 897, 1072 |
| BseXI | GCAGC | 5 cut(s) | 364, 551, 786, 835, 1397 |
| BseYI | CCCAGC | 4 cut(s) | 725, 897, 917, 1296 |
| Bsh1236I | CGCG | 6 cut(s) | 529, 531, 546, 687, 689, 1265 |
| BshNI | GGYRCC | 2 cut(s) | 236, 827 |
| BsiHKAI | GWGCWC | 1 cut(s) | 387 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1197 |
| BsiSI | CCGG | 3 cut(s) | 180, 641, 1198 |
| BslFI | GGGAC | 2 cut(s) | 444, 917 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 179, 186, 427, 455, 1005, 1198, 1243 |
| BsmAI | GTCTC | 3 cut(s) | 422, 779, 1052 |
| BsmFI | GGGAC | 2 cut(s) | 444, 917 |
| BsoBI | CYCGRG | 1 cut(s) | 1197 |
| Bsp120I | GGGCCC | 2 cut(s) | 893, 1068 |
| Bsp1286I | GDGCHC | 4 cut(s) | 387, 879, 897, 1072 |
| Bsp143I | GATC | 4 cut(s) | 589, 682, 960, 1233 |
| BspCNI | CTCAG | 4 cut(s) | 751, 772, 775, 1206 |
| BspFNI | CGCG | 6 cut(s) | 529, 531, 546, 687, 689, 1265 |
| BspMI | ACCTGC | 1 cut(s) | 946 |
| BspPI | GGATC | 2 cut(s) | 690, 1228 |
| BspT107I | GGYRCC | 2 cut(s) | 236, 827 |
| BspTI | CTTAAG | 1 cut(s) | 1238 |
| BsrBI | CCGCTC | 3 cut(s) | 167, 737, 1207 |
| BsrI | ACTGG | 4 cut(s) | 456, 527, 610, 1075 |
| BssECI | CCNNGG | 6 cut(s) | 159, 180, 403, 1196, 1197, 1263 |
| BssMI | GATC | 4 cut(s) | 589, 682, 960, 1233 |
| BssNI | GRCGYC | 2 cut(s) | 828, 1026 |
| BssSI | CACGAG | 1 cut(s) | 386 |
| BssT1I | CCWWGG | 1 cut(s) | 159 |
| Bst2BI | CACGAG | 1 cut(s) | 386 |
| Bst2UI | CCWGG | 4 cut(s) | 312, 404, 1178, 1411 |
| Bst4CI | ACNGT | 5 cut(s) | 271, 287, 748, 1133, 1418 |
| Bst6I | CTCTTC | 6 cut(s) | 198, 531, 863, 1032, 1215, 1299 |
| BstACI | GRCGYC | 2 cut(s) | 828, 1026 |
| BstAFI | CTTAAG | 1 cut(s) | 1238 |
| BstDEI | CTNAG | 5 cut(s) | 422, 738, 759, 783, 1214 |
| BstDSI | CCRYGG | 1 cut(s) | 1263 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 425 |
| BstF5I | GGATG | 4 cut(s) | 37, 191, 199, 460 |
| BstFNI | CGCG | 6 cut(s) | 529, 531, 546, 687, 689, 1265 |
| BstH2I | RGCGCY | 1 cut(s) | 831 |
| BstHHI | GCGC | 5 cut(s) | 531, 689, 830, 1104, 1400 |
| BstKTI | GATC | 4 cut(s) | 592, 685, 963, 1236 |
| BstMAI | GTCTC | 3 cut(s) | 422, 779, 1052 |
| BstMBI | GATC | 4 cut(s) | 589, 682, 960, 1233 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 374, 731, 805, 808, 935, 1080, 1262, 1391 |
| BstNI | CCWGG | 4 cut(s) | 312, 404, 1178, 1411 |
| BstSCI | CCNGG | 8 cut(s) | 179, 310, 402, 640, 1176, 1196, 1197, 1409 |
| BstSFI | CTRYAG | 2 cut(s) | 147, 1001 |
| BstSLI | GKGCMC | 4 cut(s) | 387, 879, 897, 1072 |
| BstUI | CGCG | 6 cut(s) | 529, 531, 546, 687, 689, 1265 |
| BstV1I | GCAGC | 5 cut(s) | 364, 551, 786, 835, 1397 |
| BstX2I | RGATCY | 2 cut(s) | 589, 1233 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 679 |
| BstYI | RGATCY | 2 cut(s) | 589, 1233 |
| BtgI | CCRYGG | 1 cut(s) | 1263 |
| BtgZI | GCGATG | 2 cut(s) | 28, 1302 |
| BtsCI | GGATG | 4 cut(s) | 37, 191, 199, 460 |
| BtsI | GCAGTG | 1 cut(s) | 205 |
| BtsIMutI | CAGTG | 3 cut(s) | 173, 205, 449 |
| BveI | ACCTGC | 1 cut(s) | 946 |
| CaiI | CAGNNNCTG | 1 cut(s) | 766 |
| CfoI | GCGC | 5 cut(s) | 531, 689, 830, 1104, 1400 |
| Cfr13I | GGNCC | 8 cut(s) | 260, 431, 508, 893, 894, 997, 1068, 1069 |
| Cfr42I | CCGCGG | 1 cut(s) | 1266 |
| Cfr9I | CCCGGG | 1 cut(s) | 1197 |
| CseI | GACGC | 3 cut(s) | 317, 535, 772 |
| Csp6I | GTAC | 2 cut(s) | 373, 1363 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 871, 906 |
| CviAII | CATG | 4 cut(s) | 414, 1166, 1321, 1370 |
| CviQI | GTAC | 2 cut(s) | 373, 1363 |
| DdeI | CTNAG | 5 cut(s) | 422, 738, 759, 783, 1214 |
| DinI | GGCGCC | 1 cut(s) | 829 |
| DpnI | GATC | 4 cut(s) | 591, 684, 962, 1235 |
| DpnII | GATC | 4 cut(s) | 589, 682, 960, 1233 |
| EaeI | YGGCCR | 3 cut(s) | 273, 400, 732 |
| Eam1104I | CTCTTC | 6 cut(s) | 198, 531, 863, 1032, 1215, 1299 |
| EarI | CTCTTC | 6 cut(s) | 198, 531, 863, 1032, 1215, 1299 |
| EciI | GGCGGA | 5 cut(s) | 293, 627, 1098, 1240, 1318 |
| Eco130I | CCWWGG | 1 cut(s) | 159 |
| Eco147I | AGGCCT | 2 cut(s) | 353, 970 |
| Eco24I | GRGCYC | 2 cut(s) | 897, 1072 |
| Eco32I | GATATC | 1 cut(s) | 137 |
| Eco47I | GGWCC | 1 cut(s) | 431 |
| Eco57I | CTGAAG | 2 cut(s) | 311, 1109 |
| Eco88I | CYCGRG | 1 cut(s) | 1197 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 425 |
| EcoO109I | RGGNCCY | 3 cut(s) | 431, 894, 1068 |
| EcoRII | CCWGG | 4 cut(s) | 310, 402, 1176, 1409 |
| EcoRV | GATATC | 1 cut(s) | 137 |
| EcoT14I | CCWWGG | 1 cut(s) | 159 |
| EcoT38I | GRGCYC | 2 cut(s) | 897, 1072 |
| EgeI | GGCGCC | 1 cut(s) | 829 |
| EheI | GGCGCC | 1 cut(s) | 829 |
| ErhI | CCWWGG | 1 cut(s) | 159 |
| FaeI | CATG | 4 cut(s) | 417, 1169, 1324, 1373 |
| FaqI | GGGAC | 2 cut(s) | 444, 917 |
| FatI | CATG | 4 cut(s) | 413, 1165, 1320, 1369 |
| FauI | CCCGC | 6 cut(s) | 247, 361, 886, 894, 1079, 1293 |
| FokI | GGATG | 4 cut(s) | 44, 198, 206, 467 |
| FriOI | GRGCYC | 2 cut(s) | 897, 1072 |
| FspBI | CTAG | 5 cut(s) | 38, 104, 132, 227, 587 |
| GlaI | GCGC | 5 cut(s) | 530, 688, 829, 1103, 1399 |
| GsaI | CCCAGC | 4 cut(s) | 729, 901, 921, 1300 |
| GsuI | CTGGAG | 1 cut(s) | 333 |
| HaeII | RGCGCY | 1 cut(s) | 831 |
| HapII | CCGG | 3 cut(s) | 180, 641, 1198 |
| HgaI | GACGC | 3 cut(s) | 317, 535, 772 |
| HhaI | GCGC | 5 cut(s) | 531, 689, 830, 1104, 1400 |
| Hin1I | GRCGYC | 2 cut(s) | 828, 1026 |
| Hin1II | CATG | 4 cut(s) | 417, 1169, 1324, 1373 |
| Hin6I | GCGC | 5 cut(s) | 529, 687, 828, 1102, 1398 |
| HinP1I | GCGC | 5 cut(s) | 529, 687, 828, 1102, 1398 |
| HincII | GTYRAC | 1 cut(s) | 55 |
| HindII | GTYRAC | 1 cut(s) | 55 |
| HinfI | GANTC | 7 cut(s) | 212, 409, 574, 632, 787, 1247, 1325 |
| HpaII | CCGG | 3 cut(s) | 180, 641, 1198 |
| HphI | GGTGA | 7 cut(s) | 242, 331, 784, 874, 970, 1061, 1282 |
| Hpy166II | GTNNAC | 2 cut(s) | 55, 385 |
| Hpy188I | TCNGA | 5 cut(s) | 125, 291, 741, 762, 784 |
| Hpy188III | TCNNGA | 5 cut(s) | 98, 498, 856, 964, 1336 |
| Hpy8I | GTNNAC | 2 cut(s) | 55, 385 |
| Hpy99I | CGWCG | 2 cut(s) | 1031, 1337 |
| HpyAV | CCTTC | 9 cut(s) | 289, 343, 444, 465, 853, 1040, 1084, 1150, 1333 |
| HpyCH4III | ACNGT | 5 cut(s) | 271, 287, 748, 1133, 1418 |
| HpyCH4IV | ACGT | 1 cut(s) | 1026 |
| HpyCH4V | TGCA | 2 cut(s) | 385, 1358 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 374, 731, 805, 808, 935, 1080, 1262, 1391 |
| HpyF3I | CTNAG | 5 cut(s) | 422, 738, 759, 783, 1214 |
| HpySE526I | ACGT | 1 cut(s) | 1026 |
| Hsp92I | GRCGYC | 2 cut(s) | 828, 1026 |
| Hsp92II | CATG | 4 cut(s) | 417, 1169, 1324, 1373 |
| HspAI | GCGC | 5 cut(s) | 529, 687, 828, 1102, 1398 |
| KasI | GGCGCC | 1 cut(s) | 827 |
| KspI | CCGCGG | 1 cut(s) | 1266 |
| Kzo9I | GATC | 4 cut(s) | 589, 682, 960, 1233 |
| LmnI | GCTCC | 3 cut(s) | 164, 486, 1314 |
| Lsp1109I | GCAGC | 5 cut(s) | 364, 551, 786, 835, 1397 |
| LweI | GCATC | 2 cut(s) | 652, 1042 |
| MaeI | CTAG | 5 cut(s) | 38, 104, 132, 227, 587 |
| MaeII | ACGT | 1 cut(s) | 1026 |
| MaeIII | GTNAC | 2 cut(s) | 931, 973 |
| MalI | GATC | 4 cut(s) | 591, 684, 962, 1235 |
| MbiI | CCGCTC | 3 cut(s) | 167, 737, 1207 |
| MboI | GATC | 4 cut(s) | 589, 682, 960, 1233 |
| MboII | GAAGA | 8 cut(s) | 215, 548, 880, 1046, 1049, 1055, 1232, 1316 |
| MflI | RGATCY | 2 cut(s) | 589, 1233 |
| MhlI | GDGCHC | 4 cut(s) | 387, 879, 897, 1072 |
| MlsI | TGGCCA | 1 cut(s) | 402 |
| MluCI | AATT | 2 cut(s) | 700, 1227 |
| MluNI | TGGCCA | 1 cut(s) | 402 |
| Mly113I | GGCGCC | 1 cut(s) | 828 |
| MlyI | GAGTC | 3 cut(s) | 221, 781, 1334 |
| MmeI | TCCRAC | 1 cut(s) | 1260 |
| Mox20I | TGGCCA | 1 cut(s) | 402 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1343 |
| MscI | TGGCCA | 1 cut(s) | 402 |
| MseI | TTAA | 6 cut(s) | 246, 503, 558, 753, 1116, 1239 |
| MslI | CAYNNNNRTG | 1 cut(s) | 911 |
| Msp20I | TGGCCA | 1 cut(s) | 402 |
| MspA1I | CMGCKG | 6 cut(s) | 341, 368, 725, 901, 1265, 1300 |
| MspCI | CTTAAG | 1 cut(s) | 1238 |
| MspI | CCGG | 3 cut(s) | 180, 641, 1198 |
| MspR9I | CCNGG | 8 cut(s) | 181, 312, 404, 642, 1178, 1198, 1199, 1411 |
| MvaI | CCWGG | 4 cut(s) | 312, 404, 1178, 1411 |
| MvnI | CGCG | 6 cut(s) | 529, 531, 546, 687, 689, 1265 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 374, 731, 805, 808, 935, 1080, 1262, 1391 |
| NarI | GGCGCC | 1 cut(s) | 828 |
| NciI | CCSGG | 4 cut(s) | 181, 642, 1198, 1199 |
| NdeII | GATC | 4 cut(s) | 589, 682, 960, 1233 |
| NlaIII | CATG | 4 cut(s) | 417, 1169, 1324, 1373 |
| NmeAIII | GCCGAG | 1 cut(s) | 804 |
| NmuCI | GTSAC | 1 cut(s) | 973 |
| PaqCI | CACCTGC | 1 cut(s) | 946 |
| PceI | AGGCCT | 2 cut(s) | 353, 970 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1385 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1343 |
| PfeI | GAWTC | 4 cut(s) | 409, 574, 632, 1247 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 455 |
| PleI | GAGTC | 3 cut(s) | 220, 781, 1333 |
| PluTI | GGCGCC | 1 cut(s) | 831 |
| PpsI | GAGTC | 3 cut(s) | 220, 781, 1333 |
| PpuMI | RGGWCCY | 1 cut(s) | 431 |
| PshBI | ATTAAT | 1 cut(s) | 1116 |
| Psp5II | RGGWCCY | 1 cut(s) | 431 |
| Psp6I | CCWGG | 4 cut(s) | 310, 402, 1176, 1409 |
| PspFI | CCCAGC | 4 cut(s) | 725, 897, 917, 1296 |
| PspGI | CCWGG | 4 cut(s) | 310, 402, 1176, 1409 |
| PspOMI | GGGCCC | 2 cut(s) | 893, 1068 |
| PspPI | GGNCC | 8 cut(s) | 260, 431, 508, 893, 894, 997, 1068, 1069 |
| PspPPI | RGGWCCY | 1 cut(s) | 431 |
| PstNI | CAGNNNCTG | 1 cut(s) | 766 |
| PsuI | RGATCY | 2 cut(s) | 589, 1233 |
| RsaI | GTAC | 2 cut(s) | 374, 1364 |
| RsaNI | GTAC | 2 cut(s) | 373, 1363 |
| RseI | CAYNNNNRTG | 1 cut(s) | 911 |
| SacII | CCGCGG | 1 cut(s) | 1266 |
| SaqAI | TTAA | 6 cut(s) | 246, 503, 558, 753, 1116, 1239 |
| Sau3AI | GATC | 4 cut(s) | 589, 682, 960, 1233 |
| Sau96I | GGNCC | 8 cut(s) | 260, 431, 508, 893, 894, 997, 1068, 1069 |
| SchI | GAGTC | 3 cut(s) | 221, 781, 1334 |
| ScrFI | CCNGG | 8 cut(s) | 181, 312, 404, 642, 1178, 1198, 1199, 1411 |
| SduI | GDGCHC | 4 cut(s) | 387, 879, 897, 1072 |
| SfaNI | GCATC | 2 cut(s) | 652, 1042 |
| SfcI | CTRYAG | 2 cut(s) | 147, 1001 |
| SfoI | GGCGCC | 1 cut(s) | 829 |
| Sfr303I | CCGCGG | 1 cut(s) | 1266 |
| SgrBI | CCGCGG | 1 cut(s) | 1266 |
| SinI | GGWCC | 1 cut(s) | 431 |
| SmaI | CCCGGG | 1 cut(s) | 1199 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 911 |
| SmlI | CTYRAG | 2 cut(s) | 964, 1238 |
| SmoI | CTYRAG | 2 cut(s) | 964, 1238 |
| SpeI | ACTAGT | 1 cut(s) | 103 |
| Sse9I | AATT | 2 cut(s) | 700, 1227 |
| SseBI | AGGCCT | 2 cut(s) | 353, 970 |
| SspDI | GGCGCC | 1 cut(s) | 827 |
| SspMI | CTAG | 5 cut(s) | 38, 104, 132, 227, 587 |
| StuI | AGGCCT | 2 cut(s) | 353, 970 |
| StyD4I | CCNGG | 8 cut(s) | 179, 310, 402, 640, 1176, 1196, 1197, 1409 |
| StyI | CCWWGG | 1 cut(s) | 159 |
| TaaI | ACNGT | 5 cut(s) | 271, 287, 748, 1133, 1418 |
| TaiI | ACGT | 1 cut(s) | 1029 |
| TaqI | TCGA | 6 cut(s) | 110, 139, 855, 1029, 1106, 1187 |
| TasI | AATT | 2 cut(s) | 700, 1227 |
| TatI | WGTACW | 1 cut(s) | 1362 |
| TfiI | GAWTC | 4 cut(s) | 409, 574, 632, 1247 |
| Tru1I | TTAA | 6 cut(s) | 246, 503, 558, 753, 1116, 1239 |
| Tru9I | TTAA | 6 cut(s) | 246, 503, 558, 753, 1116, 1239 |
| TscAI | CASTG | 3 cut(s) | 180, 205, 456 |
| TseFI | GTSAC | 1 cut(s) | 973 |
| TseI | GCWGC | 5 cut(s) | 377, 564, 799, 848, 1385 |
| Tsp45I | GTSAC | 1 cut(s) | 973 |
| TspDTI | ATGAA | 3 cut(s) | 710, 1047, 1386 |
| TspGWI | ACGGA | 1 cut(s) | 1394 |
| TspMI | CCCGGG | 1 cut(s) | 1197 |
| TspRI | CASTG | 3 cut(s) | 180, 205, 456 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 455 |
| Vha464I | CTTAAG | 1 cut(s) | 1238 |
| VneI | GTGCAC | 1 cut(s) | 383 |
| VpaK11BI | GGWCC | 1 cut(s) | 431 |
| VspI | ATTAAT | 1 cut(s) | 1116 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 425 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1154 |
| XmaI | CCCGGG | 1 cut(s) | 1197 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1343 |
| XspI | CTAG | 5 cut(s) | 38, 104, 132, 227, 587 |
| ZraI | GACGTC | 1 cut(s) | 1027 |