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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 773 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 1675, 2500 |
| AatII | GACGTC | 1 cut(s) | 371 |
| Acc36I | ACCTGC | 2 cut(s) | 773, 1233 |
| AccB1I | GGYRCC | 4 cut(s) | 764, 1780, 2363, 2579 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 738 |
| AccBSI | CCGCTC | 6 cut(s) | 310, 1103, 1531, 1843, 1870, 2083 |
| AccI | GTMKAC | 2 cut(s) | 350, 1221 |
| AccII | CGCG | 9 cut(s) | 548, 641, 1126, 1128, 1143, 1275, 1903, 2124, 2639 |
| AccIII | TCCGGA | 1 cut(s) | 250 |
| AclWI | GGATC | 6 cut(s) | 894, 907, 1160, 1305, 1500, 2160 |
| AcoI | YGGCCR | 6 cut(s) | 315, 1482, 1512, 1890, 2139, 2193 |
| AcsI | RAATTY | 1 cut(s) | 1315 |
| AcuI | CTGAAG | 1 cut(s) | 1915 |
| AcvI | CACGTG | 2 cut(s) | 278, 2543 |
| AcyI | GRCGYC | 6 cut(s) | 368, 881, 1781, 1985, 2118, 2384 |
| AfaI | GTAC | 6 cut(s) | 282, 1037, 1115, 1334, 2088, 2458 |
| AflIII | ACRYGT | 4 cut(s) | 275, 277, 546, 2346 |
| AgsI | TTSAA | 6 cut(s) | 503, 1247, 2270, 2278, 2353, 2654 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 988, 2595 |
| AjiI | CACGTC | 2 cut(s) | 628, 2398 |
| AjnI | CCWGG | 3 cut(s) | 126, 737, 1595 |
| AleI | CACNNNNGTG | 1 cut(s) | 390 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1832, 1864 |
| AluBI | AGCT | 9 cut(s) | 853, 964, 1748, 1935, 2014, 2131, 2237, 2450, 2648 |
| AluI | AGCT | 9 cut(s) | 853, 964, 1748, 1935, 2014, 2131, 2237, 2450, 2648 |
| Alw21I | GWGCWC | 3 cut(s) | 387, 2016, 2249 |
| Alw44I | GTGCAC | 1 cut(s) | 383 |
| AlwI | GGATC | 6 cut(s) | 894, 907, 1160, 1305, 1500, 2160 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 803, 1634 |
| Ama87I | CYCGRG | 4 cut(s) | 241, 2331, 2568, 2607 |
| Aor13HI | TCCGGA | 1 cut(s) | 250 |
| ApaI | GGGCCC | 1 cut(s) | 2332 |
| ApaLI | GTGCAC | 1 cut(s) | 383 |
| ApeKI | GCWGC | 8 cut(s) | 803, 905, 918, 1993, 2252, 2261, 2469, 2657 |
| ApoI | RAATTY | 1 cut(s) | 1315 |
| AspLEI | GCGC | 9 cut(s) | 641, 958, 1128, 1387, 1651, 1783, 1822, 1905, 2641 |
| AsuHPI | GGTGA | 3 cut(s) | 859, 1423, 2228 |
| AsuNHI | GCTAGC | 1 cut(s) | 1345 |
| AvaI | CYCGRG | 4 cut(s) | 241, 2331, 2568, 2607 |
| AvaII | GGWCC | 4 cut(s) | 1005, 1553, 2502, 2613 |
| BaeGI | GKGCMC | 2 cut(s) | 387, 2332 |
| BamHI | GGATCC | 1 cut(s) | 899 |
| BanI | GGYRCC | 4 cut(s) | 764, 1780, 2363, 2579 |
| BanII | GRGCYC | 3 cut(s) | 1723, 2016, 2332 |
| BbrPI | CACGTG | 2 cut(s) | 278, 2543 |
| BbsI | GAAGAC | 2 cut(s) | 182, 2306 |
| Bbv12I | GWGCWC | 3 cut(s) | 387, 2016, 2249 |
| BbvCI | CCTCAGC | 1 cut(s) | 2238 |
| BbvI | GCAGC | 8 cut(s) | 790, 892, 905, 2005, 2239, 2248, 2481, 2669 |
| BccI | CCATC | 8 cut(s) | 518, 740, 755, 1288, 1442, 1866, 2150, 2185 |
| BciT130I | CCWGG | 3 cut(s) | 128, 739, 1597 |
| BfaI | CTAG | 3 cut(s) | 194, 1044, 1346 |
| BfmI | CTRYAG | 5 cut(s) | 684, 725, 1362, 1458, 2451 |
| BfoI | RGCGCY | 4 cut(s) | 959, 1388, 1652, 1784 |
| BfuAI | ACCTGC | 2 cut(s) | 773, 1233 |
| BlpI | GCTNAGC | 3 cut(s) | 36, 177, 1388 |
| Bme18I | GGWCC | 4 cut(s) | 1005, 1553, 2502, 2613 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 988, 2595 |
| BmeT110I | CYCGRG | 4 cut(s) | 241, 2331, 2568, 2607 |
| BmgBI | CACGTC | 2 cut(s) | 628, 2398 |
| BmrI | ACTGGG | 1 cut(s) | 2589 |
| BmsI | GCATC | 4 cut(s) | 1404, 1410, 1524, 2125 |
| BmtI | GCTAGC | 1 cut(s) | 1349 |
| BmuI | ACTGGG | 1 cut(s) | 2589 |
| BpiI | GAAGAC | 2 cut(s) | 182, 2306 |
| BpmI | CTGGAG | 4 cut(s) | 1673, 2021, 2177, 2576 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2015, 2238 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 36, 177, 1388 |
| BpuEI | CTTGAG | 2 cut(s) | 137, 958 |
| BsaAI | YACGTR | 2 cut(s) | 278, 2543 |
| BsaHI | GRCGYC | 6 cut(s) | 368, 881, 1781, 1985, 2118, 2384 |
| BsaI | GGTCTC | 2 cut(s) | 2039, 2582 |
| BsaWI | WCCGGW | 3 cut(s) | 250, 831, 1405 |
| Bse118I | RCCGGY | 4 cut(s) | 945, 1484, 1892, 2404 |
| Bse1I | ACTGG | 9 cut(s) | 1001, 1207, 1393, 1429, 1610, 1791, 2073, 2094, 2595 |
| BseAI | TCCGGA | 1 cut(s) | 250 |
| BseBI | CCWGG | 3 cut(s) | 128, 739, 1597 |
| BseGI | GGATG | 9 cut(s) | 529, 732, 798, 877, 1453, 1539, 2142, 2196, 2488 |
| BseNI | ACTGG | 9 cut(s) | 1001, 1207, 1393, 1429, 1610, 1791, 2073, 2094, 2595 |
| BseRI | GAGGAG | 3 cut(s) | 116, 422, 425 |
| BseSI | GKGCMC | 2 cut(s) | 387, 2332 |
| BseX3I | CGGCCG | 3 cut(s) | 315, 1482, 1512 |
| BseXI | GCAGC | 8 cut(s) | 790, 892, 905, 2005, 2239, 2248, 2481, 2669 |
| BseYI | CCCAGC | 7 cut(s) | 1353, 1634, 1873, 2209, 2446, 2505, 2517 |
| BsgI | GTGCAG | 1 cut(s) | 1484 |
| Bsh1236I | CGCG | 9 cut(s) | 548, 641, 1126, 1128, 1143, 1275, 1903, 2124, 2639 |
| Bsh1285I | CGRYCG | 7 cut(s) | 318, 375, 1485, 1515, 2409, 2633, 2637 |
| BshNI | GGYRCC | 4 cut(s) | 764, 1780, 2363, 2579 |
| BsiEI | CGRYCG | 7 cut(s) | 318, 375, 1485, 1515, 2409, 2633, 2637 |
| BsiHKAI | GWGCWC | 3 cut(s) | 387, 2016, 2249 |
| BsiHKCI | CYCGRG | 4 cut(s) | 241, 2331, 2568, 2607 |
| BslFI | GGGAC | 6 cut(s) | 122, 995, 1018, 1119, 2402, 2488 |
| BsmBI | CGTCTC | 2 cut(s) | 56, 359 |
| BsmFI | GGGAC | 6 cut(s) | 122, 995, 1018, 1119, 2402, 2488 |
| BsmI | GAATGC | 1 cut(s) | 2273 |
| Bso31I | GGTCTC | 2 cut(s) | 2039, 2582 |
| BsoBI | CYCGRG | 4 cut(s) | 241, 2331, 2568, 2607 |
| Bsp120I | GGGCCC | 1 cut(s) | 2328 |
| Bsp1286I | GDGCHC | 5 cut(s) | 387, 1723, 2016, 2249, 2332 |
| Bsp13I | TCCGGA | 1 cut(s) | 250 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 36, 177, 1388 |
| Bsp19I | CCATGG | 1 cut(s) | 514 |
| Bsp68I | TCGCGA | 1 cut(s) | 1275 |
| BspEI | TCCGGA | 1 cut(s) | 250 |
| BspFNI | CGCG | 9 cut(s) | 548, 641, 1126, 1128, 1143, 1275, 1903, 2124, 2639 |
| BspHI | TCATGA | 1 cut(s) | 1827 |
| BspMAI | CTGCAG | 1 cut(s) | 688 |
| BspMI | ACCTGC | 2 cut(s) | 773, 1233 |
| BspOI | GCTAGC | 1 cut(s) | 1349 |
| BspPI | GGATC | 6 cut(s) | 894, 907, 1160, 1305, 1500, 2160 |
| BspQI | GCTCTTC | 1 cut(s) | 2004 |
| BspT107I | GGYRCC | 4 cut(s) | 764, 1780, 2363, 2579 |
| BspTNI | GGTCTC | 2 cut(s) | 2039, 2582 |
| BsrBI | CCGCTC | 6 cut(s) | 310, 1103, 1531, 1843, 1870, 2083 |
| BsrFI | RCCGGY | 4 cut(s) | 945, 1484, 1892, 2404 |
| BsrI | ACTGG | 9 cut(s) | 1001, 1207, 1393, 1429, 1610, 1791, 2073, 2094, 2595 |
| BssAI | RCCGGY | 4 cut(s) | 945, 1484, 1892, 2404 |
| BssNAI | GTATAC | 1 cut(s) | 351 |
| BssNI | GRCGYC | 6 cut(s) | 368, 881, 1781, 1985, 2118, 2384 |
| BssT1I | CCWWGG | 2 cut(s) | 514, 2058 |
| Bst1107I | GTATAC | 1 cut(s) | 351 |
| Bst2UI | CCWGG | 3 cut(s) | 128, 739, 1597 |
| Bst4CI | ACNGT | 7 cut(s) | 382, 392, 868, 1028, 1363, 1462, 1762 |
| Bst6I | CTCTTC | 3 cut(s) | 1128, 1686, 2004 |
| BstACI | GRCGYC | 6 cut(s) | 368, 881, 1781, 1985, 2118, 2384 |
| BstBAI | YACGTR | 2 cut(s) | 278, 2543 |
| BstDSI | CCRYGG | 2 cut(s) | 514, 2122 |
| BstF5I | GGATG | 9 cut(s) | 529, 732, 798, 877, 1453, 1539, 2142, 2196, 2488 |
| BstFNI | CGCG | 9 cut(s) | 548, 641, 1126, 1128, 1143, 1275, 1903, 2124, 2639 |
| BstH2I | RGCGCY | 4 cut(s) | 959, 1388, 1652, 1784 |
| BstHHI | GCGC | 9 cut(s) | 641, 958, 1128, 1387, 1651, 1783, 1822, 1905, 2641 |
| BstMCI | CGRYCG | 7 cut(s) | 318, 375, 1485, 1515, 2409, 2633, 2637 |
| BstNI | CCWGG | 3 cut(s) | 128, 739, 1597 |
| BstNSI | RCATGY | 1 cut(s) | 2350 |
| BstSFI | CTRYAG | 5 cut(s) | 684, 725, 1362, 1458, 2451 |
| BstSLI | GKGCMC | 2 cut(s) | 387, 2332 |
| BstUI | CGCG | 9 cut(s) | 548, 641, 1126, 1128, 1143, 1275, 1903, 2124, 2639 |
| BstV1I | GCAGC | 8 cut(s) | 790, 892, 905, 2005, 2239, 2248, 2481, 2669 |
| BstV2I | GAAGAC | 2 cut(s) | 182, 2306 |
| BstX2I | RGATCY | 2 cut(s) | 899, 2152 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1550, 1798 |
| BstYI | RGATCY | 2 cut(s) | 899, 2152 |
| BstZ17I | GTATAC | 1 cut(s) | 351 |
| BstZI | CGGCCG | 3 cut(s) | 315, 1482, 1512 |
| BtgI | CCRYGG | 2 cut(s) | 514, 2122 |
| BtgZI | GCGATG | 1 cut(s) | 1307 |
| BtrI | CACGTC | 2 cut(s) | 628, 2398 |
| BtsCI | GGATG | 9 cut(s) | 529, 732, 798, 877, 1453, 1539, 2142, 2196, 2488 |
| BtsI | GCAGTG | 2 cut(s) | 613, 695 |
| BtsIMutI | CAGTG | 7 cut(s) | 408, 613, 695, 873, 1467, 1798, 2303 |
| BtuMI | TCGCGA | 1 cut(s) | 1275 |
| BveI | ACCTGC | 2 cut(s) | 773, 1233 |
| CaiI | CAGNNNCTG | 2 cut(s) | 803, 1634 |
| CciI | TCATGA | 1 cut(s) | 1827 |
| CfoI | GCGC | 9 cut(s) | 641, 958, 1128, 1387, 1651, 1783, 1822, 1905, 2641 |
| Cfr10I | RCCGGY | 4 cut(s) | 945, 1484, 1892, 2404 |
| Cfr42I | CCGCGG | 1 cut(s) | 2125 |
| Cfr9I | CCCGGG | 2 cut(s) | 2331, 2568 |
| CseI | GACGC | 7 cut(s) | 332, 659, 870, 1286, 1974, 2126, 2373 |
| Csp6I | GTAC | 6 cut(s) | 281, 1036, 1114, 1333, 2087, 2457 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 196, 231, 397, 432, 1743, 1778 |
| CviAII | CATG | 4 cut(s) | 515, 1330, 1828, 2347 |
| CviQI | GTAC | 6 cut(s) | 281, 1036, 1114, 1333, 2087, 2457 |
| DinI | GGCGCC | 1 cut(s) | 1782 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1675, 2500 |
| DriI | GACNNNNNGTC | 2 cut(s) | 988, 2595 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1675, 2500 |
| EaeI | YGGCCR | 6 cut(s) | 315, 1482, 1512, 1890, 2139, 2193 |
| EagI | CGGCCG | 3 cut(s) | 315, 1482, 1512 |
| Eam1104I | CTCTTC | 3 cut(s) | 1128, 1686, 2004 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 988, 2595 |
| EarI | CTCTTC | 3 cut(s) | 1128, 1686, 2004 |
| Ecl136II | GAGCTC | 1 cut(s) | 2014 |
| EclXI | CGGCCG | 3 cut(s) | 315, 1482, 1512 |
| Eco130I | CCWWGG | 2 cut(s) | 514, 2058 |
| Eco24I | GRGCYC | 3 cut(s) | 1723, 2016, 2332 |
| Eco31I | GGTCTC | 2 cut(s) | 2039, 2582 |
| Eco47I | GGWCC | 4 cut(s) | 1005, 1553, 2502, 2613 |
| Eco52I | CGGCCG | 3 cut(s) | 315, 1482, 1512 |
| Eco53kI | GAGCTC | 1 cut(s) | 2014 |
| Eco57I | CTGAAG | 1 cut(s) | 1915 |
| Eco72I | CACGTG | 2 cut(s) | 278, 2543 |
| Eco88I | CYCGRG | 4 cut(s) | 241, 2331, 2568, 2607 |
| EcoICRI | GAGCTC | 1 cut(s) | 2014 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1005, 2328, 2502 |
| EcoRII | CCWGG | 3 cut(s) | 126, 737, 1595 |
| EcoT14I | CCWWGG | 2 cut(s) | 514, 2058 |
| EcoT38I | GRGCYC | 3 cut(s) | 1723, 2016, 2332 |
| EgeI | GGCGCC | 1 cut(s) | 1782 |
| EheI | GGCGCC | 1 cut(s) | 1782 |
| ErhI | CCWWGG | 2 cut(s) | 514, 2058 |
| Esp3I | CGTCTC | 2 cut(s) | 56, 359 |
| FaeI | CATG | 4 cut(s) | 518, 1333, 1831, 2350 |
| FaqI | GGGAC | 6 cut(s) | 122, 995, 1018, 1119, 2402, 2488 |
| FatI | CATG | 4 cut(s) | 514, 1329, 1827, 2346 |
| FblI | GTMKAC | 2 cut(s) | 350, 1221 |
| FokI | GGATG | 9 cut(s) | 536, 719, 805, 884, 1460, 1546, 2129, 2203, 2475 |
| FriOI | GRGCYC | 3 cut(s) | 1723, 2016, 2332 |
| FspBI | CTAG | 3 cut(s) | 194, 1044, 1346 |
| GlaI | GCGC | 9 cut(s) | 640, 957, 1127, 1386, 1650, 1782, 1821, 1904, 2640 |
| GsaI | CCCAGC | 7 cut(s) | 1357, 1638, 1877, 2213, 2450, 2509, 2521 |
| GsuI | CTGGAG | 4 cut(s) | 1673, 2021, 2177, 2576 |
| HaeII | RGCGCY | 4 cut(s) | 959, 1388, 1652, 1784 |
| HgaI | GACGC | 7 cut(s) | 332, 659, 870, 1286, 1974, 2126, 2373 |
| HhaI | GCGC | 9 cut(s) | 641, 958, 1128, 1387, 1651, 1783, 1822, 1905, 2641 |
| Hin1I | GRCGYC | 6 cut(s) | 368, 881, 1781, 1985, 2118, 2384 |
| Hin1II | CATG | 4 cut(s) | 518, 1333, 1831, 2350 |
| Hin6I | GCGC | 9 cut(s) | 639, 956, 1126, 1385, 1649, 1781, 1820, 1903, 2639 |
| HinP1I | GCGC | 9 cut(s) | 639, 956, 1126, 1385, 1649, 1781, 1820, 1903, 2639 |
| HincII | GTYRAC | 4 cut(s) | 586, 775, 811, 1222 |
| HindII | GTYRAC | 4 cut(s) | 586, 775, 811, 1222 |
| HindIII | AAGCTT | 1 cut(s) | 2129 |
| HphI | GGTGA | 3 cut(s) | 859, 1423, 2228 |
| Hpy99I | CGWCG | 9 cut(s) | 373, 886, 1028, 1280, 1624, 1912, 2497, 2533, 2579 |
| HpyCH4III | ACNGT | 7 cut(s) | 382, 392, 868, 1028, 1363, 1462, 1762 |
| HpyCH4IV | ACGT | 8 cut(s) | 277, 368, 588, 627, 714, 827, 2397, 2542 |
| HpyCH4V | TGCA | 5 cut(s) | 385, 405, 686, 1465, 1754 |
| HpySE526I | ACGT | 8 cut(s) | 277, 368, 588, 627, 714, 827, 2397, 2542 |
| Hsp92I | GRCGYC | 6 cut(s) | 368, 881, 1781, 1985, 2118, 2384 |
| Hsp92II | CATG | 4 cut(s) | 518, 1333, 1831, 2350 |
| HspAI | GCGC | 9 cut(s) | 639, 956, 1126, 1385, 1649, 1781, 1820, 1903, 2639 |
| KasI | GGCGCC | 1 cut(s) | 1780 |
| KflI | GGGWCCC | 1 cut(s) | 2502 |
| Kpn2I | TCCGGA | 1 cut(s) | 250 |
| KroI | GCCGGC | 3 cut(s) | 945, 1484, 1892 |
| KroNI | GCCGGC | 3 cut(s) | 947, 1486, 1894 |
| KspI | CCGCGG | 1 cut(s) | 2125 |
| LguI | GCTCTTC | 1 cut(s) | 2004 |
| Lsp1109I | GCAGC | 8 cut(s) | 790, 892, 905, 2005, 2239, 2248, 2481, 2669 |
| LweI | GCATC | 4 cut(s) | 1404, 1410, 1524, 2125 |
| MaeI | CTAG | 3 cut(s) | 194, 1044, 1346 |
| MaeII | ACGT | 8 cut(s) | 277, 368, 588, 627, 714, 827, 2397, 2542 |
| MaeIII | GTNAC | 6 cut(s) | 224, 376, 1591, 1962, 2385, 2538 |
| MbiI | CCGCTC | 6 cut(s) | 310, 1103, 1531, 1843, 1870, 2083 |
| MboII | GAAGA | 8 cut(s) | 182, 1142, 1145, 1592, 1703, 1744, 2021, 2311 |
| MfeI | CAATTG | 1 cut(s) | 1914 |
| MflI | RGATCY | 2 cut(s) | 899, 2152 |
| MhlI | GDGCHC | 5 cut(s) | 387, 1723, 2016, 2249, 2332 |
| MluCI | AATT | 5 cut(s) | 468, 563, 1315, 1914, 2199 |
| MluI | ACGCGT | 1 cut(s) | 546 |
| Mly113I | GGCGCC | 1 cut(s) | 1781 |
| MlyI | GAGTC | 5 cut(s) | 949, 977, 1279, 1796, 2186 |
| MmeI | TCCRAC | 5 cut(s) | 1114, 1696, 2511, 2516, 2624 |
| MroI | TCCGGA | 1 cut(s) | 250 |
| MroNI | GCCGGC | 3 cut(s) | 945, 1484, 1892 |
| MseI | TTAA | 5 cut(s) | 201, 480, 558, 1077, 2202 |
| MslI | CAYNNNNRTG | 1 cut(s) | 390 |
| MunI | CAATTG | 1 cut(s) | 1914 |
| Mva1269I | GAATGC | 1 cut(s) | 2273 |
| MvaI | CCWGG | 3 cut(s) | 128, 739, 1597 |
| MvnI | CGCG | 9 cut(s) | 548, 641, 1126, 1128, 1143, 1275, 1903, 2124, 2639 |
| NaeI | GCCGGC | 3 cut(s) | 947, 1486, 1894 |
| NarI | GGCGCC | 1 cut(s) | 1781 |
| NcoI | CCATGG | 1 cut(s) | 514 |
| NgoMIV | GCCGGC | 3 cut(s) | 945, 1484, 1892 |
| NheI | GCTAGC | 1 cut(s) | 1345 |
| NlaIII | CATG | 4 cut(s) | 518, 1333, 1831, 2350 |
| NmeAIII | GCCGAG | 7 cut(s) | 343, 938, 947, 1363, 1837, 1916, 2104 |
| NmuCI | GTSAC | 3 cut(s) | 1591, 2385, 2538 |
| NruI | TCGCGA | 1 cut(s) | 1275 |
| NspI | RCATGY | 1 cut(s) | 2350 |
| OliI | CACNNNNGTG | 1 cut(s) | 390 |
| PagI | TCATGA | 1 cut(s) | 1827 |
| PaqCI | CACCTGC | 1 cut(s) | 773 |
| PasI | CCCWGGG | 1 cut(s) | 738 |
| PciI | ACATGT | 1 cut(s) | 2346 |
| PciSI | GCTCTTC | 1 cut(s) | 2004 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 671, 1974 |
| PctI | GAATGC | 1 cut(s) | 2273 |
| PdiI | GCCGGC | 3 cut(s) | 947, 1486, 1894 |
| PfeI | GAWTC | 6 cut(s) | 427, 576, 614, 662, 886, 973 |
| PflFI | GACNNNGTC | 2 cut(s) | 48, 2527 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 738 |
| Ple19I | CGATCG | 2 cut(s) | 375, 2633 |
| PleI | GAGTC | 5 cut(s) | 948, 977, 1278, 1796, 2185 |
| PluTI | GGCGCC | 1 cut(s) | 1784 |
| PmaCI | CACGTG | 2 cut(s) | 278, 2543 |
| PmlI | CACGTG | 2 cut(s) | 278, 2543 |
| PpsI | GAGTC | 5 cut(s) | 948, 977, 1278, 1796, 2185 |
| Ppu21I | YACGTR | 2 cut(s) | 278, 2543 |
| PpuMI | RGGWCCY | 2 cut(s) | 1005, 2502 |
| PscI | ACATGT | 1 cut(s) | 2346 |
| Psp124BI | GAGCTC | 1 cut(s) | 2016 |
| Psp5II | RGGWCCY | 2 cut(s) | 1005, 2502 |
| Psp6I | CCWGG | 3 cut(s) | 126, 737, 1595 |
| PspCI | CACGTG | 2 cut(s) | 278, 2543 |
| PspFI | CCCAGC | 7 cut(s) | 1353, 1634, 1873, 2209, 2446, 2505, 2517 |
| PspGI | CCWGG | 3 cut(s) | 126, 737, 1595 |
| PspOMI | GGGCCC | 1 cut(s) | 2328 |
| PspPPI | RGGWCCY | 2 cut(s) | 1005, 2502 |
| PstI | CTGCAG | 1 cut(s) | 688 |
| PstNI | CAGNNNCTG | 2 cut(s) | 803, 1634 |
| PsuI | RGATCY | 2 cut(s) | 899, 2152 |
| PsyI | GACNNNGTC | 2 cut(s) | 48, 2527 |
| PvuI | CGATCG | 2 cut(s) | 375, 2633 |
| PvuII | CAGCTG | 2 cut(s) | 2450, 2648 |
| RruI | TCGCGA | 1 cut(s) | 1275 |
| RsaI | GTAC | 6 cut(s) | 282, 1037, 1115, 1334, 2088, 2458 |
| RsaNI | GTAC | 6 cut(s) | 281, 1036, 1114, 1333, 2087, 2457 |
| RseI | CAYNNNNRTG | 1 cut(s) | 390 |
| SacI | GAGCTC | 1 cut(s) | 2016 |
| SacII | CCGCGG | 1 cut(s) | 2125 |
| SalI | GTCGAC | 1 cut(s) | 1220 |
| SapI | GCTCTTC | 1 cut(s) | 2004 |
| SaqAI | TTAA | 5 cut(s) | 201, 480, 558, 1077, 2202 |
| SbfI | CCTGCAGG | 1 cut(s) | 688 |
| SchI | GAGTC | 5 cut(s) | 949, 977, 1279, 1796, 2186 |
| SdaI | CCTGCAGG | 1 cut(s) | 688 |
| SduI | GDGCHC | 5 cut(s) | 387, 1723, 2016, 2249, 2332 |
| SfaNI | GCATC | 4 cut(s) | 1404, 1410, 1524, 2125 |
| SfcI | CTRYAG | 5 cut(s) | 684, 725, 1362, 1458, 2451 |
| SfoI | GGCGCC | 1 cut(s) | 1782 |
| Sfr303I | CCGCGG | 1 cut(s) | 2125 |
| SgrBI | CCGCGG | 1 cut(s) | 2125 |
| SinI | GGWCC | 4 cut(s) | 1005, 1553, 2502, 2613 |
| SmaI | CCCGGG | 2 cut(s) | 2333, 2570 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 390 |
| SmlI | CTYRAG | 2 cut(s) | 116, 937 |
| SmoI | CTYRAG | 2 cut(s) | 116, 937 |
| SrfI | GCCCGGGC | 1 cut(s) | 2333 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 688 |
| Sse9I | AATT | 5 cut(s) | 468, 563, 1315, 1914, 2199 |
| SspDI | GGCGCC | 1 cut(s) | 1780 |
| SspMI | CTAG | 3 cut(s) | 194, 1044, 1346 |
| SstI | GAGCTC | 1 cut(s) | 2016 |
| StyI | CCWWGG | 2 cut(s) | 514, 2058 |
| TaaI | ACNGT | 7 cut(s) | 382, 392, 868, 1028, 1363, 1462, 1762 |
| TaiI | ACGT | 8 cut(s) | 280, 371, 591, 630, 717, 830, 2400, 2545 |
| TaqI | TCGA | 9 cut(s) | 300, 371, 884, 969, 1049, 1099, 1221, 1268, 2409 |
| TaqII | GACCGA | 2 cut(s) | 2324, 2623 |
| TasI | AATT | 5 cut(s) | 468, 563, 1315, 1914, 2199 |
| TfiI | GAWTC | 6 cut(s) | 427, 576, 614, 662, 886, 973 |
| Tru1I | TTAA | 5 cut(s) | 201, 480, 558, 1077, 2202 |
| Tru9I | TTAA | 5 cut(s) | 201, 480, 558, 1077, 2202 |
| TscAI | CASTG | 7 cut(s) | 415, 613, 702, 873, 1467, 1798, 2310 |
| TseFI | GTSAC | 3 cut(s) | 1591, 2385, 2538 |
| TseI | GCWGC | 8 cut(s) | 803, 905, 918, 1993, 2252, 2261, 2469, 2657 |
| Tsp45I | GTSAC | 3 cut(s) | 1591, 2385, 2538 |
| TspDTI | ATGAA | 2 cut(s) | 1816, 2181 |
| TspGWI | ACGGA | 4 cut(s) | 176, 663, 1231, 2510 |
| TspMI | CCCGGG | 2 cut(s) | 2331, 2568 |
| TspRI | CASTG | 7 cut(s) | 415, 613, 702, 873, 1467, 1798, 2310 |
| Tth111I | GACNNNGTC | 2 cut(s) | 48, 2527 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 738 |
| VneI | GTGCAC | 1 cut(s) | 383 |
| VpaK11BI | GGWCC | 4 cut(s) | 1005, 1553, 2502, 2613 |
| XapI | RAATTY | 1 cut(s) | 1315 |
| XceI | RCATGY | 1 cut(s) | 2350 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 521, 1436, 2065 |
| XmaI | CCCGGG | 2 cut(s) | 2331, 2568 |
| XmiI | GTMKAC | 2 cut(s) | 350, 1221 |
| XspI | CTAG | 3 cut(s) | 194, 1044, 1346 |
| ZraI | GACGTC | 1 cut(s) | 369 |