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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 179 |
| AccB1I | GGYRCC | 4 cut(s) | 895, 2297, 2333, 2438 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 603, 960, 2343 |
| AccBSI | CCGCTC | 3 cut(s) | 1900, 2053, 2408 |
| AccII | CGCG | 8 cut(s) | 121, 351, 438, 440, 873, 1299, 1626, 2220 |
| AccIII | TCCGGA | 2 cut(s) | 312, 634 |
| AclWI | GGATC | 3 cut(s) | 823, 1493, 1506 |
| AcoI | YGGCCR | 5 cut(s) | 175, 660, 1614, 2025, 2109 |
| AcuI | CTGAAG | 2 cut(s) | 782, 2123 |
| AcvI | CACGTG | 1 cut(s) | 1394 |
| AcyI | GRCGYC | 2 cut(s) | 1877, 1978 |
| AfaI | GTAC | 9 cut(s) | 193, 478, 1032, 1055, 1148, 1190, 2246, 2264, 2404 |
| AfeI | AGCGCT | 1 cut(s) | 260 |
| AflIII | ACRYGT | 3 cut(s) | 957, 1391, 2085 |
| AgsI | TTSAA | 2 cut(s) | 2132, 2435 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1141 |
| AjnI | CCWGG | 9 cut(s) | 150, 172, 912, 1065, 1411, 1476, 1869, 1950, 2422 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1806, 1838 |
| AluBI | AGCT | 7 cut(s) | 346, 396, 796, 1117, 1379, 1906, 2205 |
| AluI | AGCT | 7 cut(s) | 346, 396, 796, 1117, 1379, 1906, 2205 |
| Alw21I | GWGCWC | 5 cut(s) | 520, 628, 858, 1908, 2207 |
| Alw26I | GTCTC | 8 cut(s) | 49, 67, 528, 1355, 1397, 1580, 1929, 2094 |
| Alw44I | GTGCAC | 2 cut(s) | 624, 854 |
| AlwI | GGATC | 3 cut(s) | 823, 1493, 1506 |
| Ama87I | CYCGRG | 2 cut(s) | 157, 383 |
| Aor13HI | TCCGGA | 2 cut(s) | 312, 634 |
| Aor51HI | AGCGCT | 1 cut(s) | 260 |
| ApaI | GGGCCC | 1 cut(s) | 1693 |
| ApaLI | GTGCAC | 2 cut(s) | 624, 854 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2136 |
| AspLEI | GCGC | 7 cut(s) | 261, 351, 440, 979, 1065, 1111, 2222 |
| AsuC2I | CCSGG | 2 cut(s) | 783, 1260 |
| AsuHPI | GGTGA | 7 cut(s) | 146, 289, 802, 1553, 1823, 1837, 2198 |
| AvaI | CYCGRG | 2 cut(s) | 157, 383 |
| AvaII | GGWCC | 6 cut(s) | 8, 1013, 1200, 1256, 1453, 1569 |
| AxyI | CCTNAGG | 2 cut(s) | 1130, 1728 |
| BaeGI | GKGCMC | 4 cut(s) | 628, 858, 900, 1693 |
| BamHI | GGATCC | 1 cut(s) | 1498 |
| BanI | GGYRCC | 4 cut(s) | 895, 2297, 2333, 2438 |
| BanII | GRGCYC | 5 cut(s) | 158, 1218, 1693, 1908, 2207 |
| BauI | CACGAG | 3 cut(s) | 50, 857, 2013 |
| BbrPI | CACGTG | 1 cut(s) | 1394 |
| BbsI | GAAGAC | 1 cut(s) | 515 |
| Bbv12I | GWGCWC | 5 cut(s) | 520, 628, 858, 1908, 2207 |
| BccI | CCATC | 6 cut(s) | 310, 548, 802, 1256, 1538, 2345 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2337, 2371 |
| BciT130I | CCWGG | 9 cut(s) | 152, 174, 914, 1067, 1413, 1478, 1871, 1952, 2424 |
| BciVI | GTATCC | 1 cut(s) | 396 |
| BcnI | CCSGG | 2 cut(s) | 783, 1260 |
| BcoDI | GTCTC | 8 cut(s) | 49, 67, 528, 1355, 1397, 1580, 1929, 2094 |
| BfaI | CTAG | 5 cut(s) | 414, 575, 645, 1686, 2488 |
| BfmI | CTRYAG | 4 cut(s) | 590, 1554, 1928, 2321 |
| BfoI | RGCGCY | 4 cut(s) | 262, 980, 1066, 1112 |
| BfuAI | ACCTGC | 1 cut(s) | 179 |
| BfuI | GTATCC | 1 cut(s) | 396 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 174, 2162 |
| Bme18I | GGWCC | 6 cut(s) | 8, 1013, 1200, 1256, 1453, 1569 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1141 |
| BmeT110I | CYCGRG | 2 cut(s) | 157, 383 |
| BmrI | ACTGGG | 2 cut(s) | 205, 2353 |
| BmsI | GCATC | 6 cut(s) | 93, 1423, 1660, 1990, 2349, 2363 |
| BmuI | ACTGGG | 2 cut(s) | 205, 2353 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1347 |
| BpiI | GAAGAC | 1 cut(s) | 515 |
| BplI | GAGNNNNNCTC | 5 cut(s) | 809, 841, 1809, 1841, 2468 |
| BpmI | CTGGAG | 2 cut(s) | 1499, 1636 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1907, 2201 |
| BpuEI | CTTGAG | 1 cut(s) | 1304 |
| BpuMI | CCSGG | 2 cut(s) | 783, 1260 |
| Bsa29I | ATCGAT | 1 cut(s) | 2357 |
| BsaAI | YACGTR | 3 cut(s) | 480, 1057, 1394 |
| BsaHI | GRCGYC | 2 cut(s) | 1877, 1978 |
| BsaI | GGTCTC | 1 cut(s) | 67 |
| BsaWI | WCCGGW | 3 cut(s) | 312, 634, 774 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 30, 1205, 1235 |
| Bse118I | RCCGGY | 5 cut(s) | 756, 1571, 1612, 2195, 2362 |
| Bse1I | ACTGG | 6 cut(s) | 211, 836, 1053, 1154, 2028, 2348 |
| Bse21I | CCTNAGG | 2 cut(s) | 1130, 1728 |
| Bse3DI | GCAATG | 3 cut(s) | 930, 1167, 1455 |
| BseAI | TCCGGA | 2 cut(s) | 312, 634 |
| BseBI | CCWGG | 9 cut(s) | 152, 174, 914, 1067, 1413, 1478, 1871, 1952, 2424 |
| BseCI | ATCGAT | 1 cut(s) | 2357 |
| BseGI | GGATG | 5 cut(s) | 321, 741, 1248, 1675, 1767 |
| BseMI | GCAATG | 3 cut(s) | 930, 1167, 1455 |
| BseMII | CTCAG | 6 cut(s) | 1105, 1121, 1719, 1921, 2192, 2199 |
| BseNI | ACTGG | 6 cut(s) | 211, 836, 1053, 1154, 2028, 2348 |
| BseRI | GAGGAG | 3 cut(s) | 830, 1713, 1928 |
| BseSI | GKGCMC | 4 cut(s) | 628, 858, 900, 1693 |
| BseX3I | CGGCCG | 3 cut(s) | 660, 1614, 2109 |
| BseYI | CCCAGC | 1 cut(s) | 1178 |
| Bsh1236I | CGCG | 8 cut(s) | 121, 351, 438, 440, 873, 1299, 1626, 2220 |
| Bsh1285I | CGRYCG | 6 cut(s) | 663, 1020, 1617, 2112, 2229, 2367 |
| BshNI | GGYRCC | 4 cut(s) | 895, 2297, 2333, 2438 |
| BshVI | ATCGAT | 1 cut(s) | 2357 |
| BsiEI | CGRYCG | 6 cut(s) | 663, 1020, 1617, 2112, 2229, 2367 |
| BsiHKAI | GWGCWC | 5 cut(s) | 520, 628, 858, 1908, 2207 |
| BsiHKCI | CYCGRG | 2 cut(s) | 157, 383 |
| BsiWI | CGTACG | 1 cut(s) | 476 |
| BslFI | GGGAC | 3 cut(s) | 192, 1148, 1582 |
| BsmAI | GTCTC | 8 cut(s) | 49, 67, 528, 1355, 1397, 1580, 1929, 2094 |
| BsmBI | CGTCTC | 2 cut(s) | 1355, 1580 |
| BsmFI | GGGAC | 3 cut(s) | 192, 1148, 1582 |
| BsmI | GAATGC | 1 cut(s) | 1450 |
| Bso31I | GGTCTC | 1 cut(s) | 67 |
| BsoBI | CYCGRG | 2 cut(s) | 157, 383 |
| Bsp120I | GGGCCC | 1 cut(s) | 1689 |
| Bsp1286I | GDGCHC | 9 cut(s) | 158, 520, 628, 858, 900, 1218, 1693, 1908, 2207 |
| Bsp13I | TCCGGA | 2 cut(s) | 312, 634 |
| Bsp143I | GATC | 6 cut(s) | 136, 243, 828, 1119, 1498, 1768 |
| Bsp19I | CCATGG | 1 cut(s) | 2301 |
| BspCNI | CTCAG | 6 cut(s) | 1104, 1122, 1720, 1920, 2193, 2200 |
| BspDI | ATCGAT | 1 cut(s) | 2357 |
| BspEI | TCCGGA | 2 cut(s) | 312, 634 |
| BspFNI | CGCG | 8 cut(s) | 121, 351, 438, 440, 873, 1299, 1626, 2220 |
| BspMAI | CTGCAG | 1 cut(s) | 2325 |
| BspMI | ACCTGC | 1 cut(s) | 179 |
| BspPI | GGATC | 3 cut(s) | 823, 1493, 1506 |
| BspT107I | GGYRCC | 4 cut(s) | 895, 2297, 2333, 2438 |
| BspTNI | GGTCTC | 1 cut(s) | 67 |
| BsrBI | CCGCTC | 3 cut(s) | 1900, 2053, 2408 |
| BsrDI | GCAATG | 3 cut(s) | 930, 1167, 1455 |
| BsrFI | RCCGGY | 5 cut(s) | 756, 1571, 1612, 2195, 2362 |
| BsrI | ACTGG | 6 cut(s) | 211, 836, 1053, 1154, 2028, 2348 |
| BssAI | RCCGGY | 5 cut(s) | 756, 1571, 1612, 2195, 2362 |
| BssMI | GATC | 6 cut(s) | 136, 243, 828, 1119, 1498, 1768 |
| BssNI | GRCGYC | 2 cut(s) | 1877, 1978 |
| BssSI | CACGAG | 3 cut(s) | 50, 857, 2013 |
| BssT1I | CCWWGG | 5 cut(s) | 19, 722, 1102, 2115, 2301 |
| Bst2BI | CACGAG | 3 cut(s) | 50, 857, 2013 |
| Bst2UI | CCWGG | 9 cut(s) | 152, 174, 914, 1067, 1413, 1478, 1871, 1952, 2424 |
| Bst4CI | ACNGT | 7 cut(s) | 1021, 1558, 1811, 1849, 1997, 2064, 2178 |
| Bst6I | CTCTTC | 2 cut(s) | 1284, 1656 |
| BstACI | GRCGYC | 2 cut(s) | 1877, 1978 |
| BstBAI | YACGTR | 3 cut(s) | 480, 1057, 1394 |
| BstDEI | CTNAG | 8 cut(s) | 271, 1091, 1130, 1535, 1728, 1907, 2201, 2208 |
| BstDSI | CCRYGG | 6 cut(s) | 602, 1020, 1173, 1674, 2235, 2301 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1985 |
| BstF5I | GGATG | 5 cut(s) | 321, 741, 1248, 1675, 1767 |
| BstFNI | CGCG | 8 cut(s) | 121, 351, 438, 440, 873, 1299, 1626, 2220 |
| BstH2I | RGCGCY | 4 cut(s) | 262, 980, 1066, 1112 |
| BstHHI | GCGC | 7 cut(s) | 261, 351, 440, 979, 1065, 1111, 2222 |
| BstKTI | GATC | 6 cut(s) | 139, 246, 831, 1122, 1501, 1771 |
| BstMAI | GTCTC | 8 cut(s) | 49, 67, 528, 1355, 1397, 1580, 1929, 2094 |
| BstMBI | GATC | 6 cut(s) | 136, 243, 828, 1119, 1498, 1768 |
| BstMCI | CGRYCG | 6 cut(s) | 663, 1020, 1617, 2112, 2229, 2367 |
| BstNI | CCWGG | 9 cut(s) | 152, 174, 914, 1067, 1413, 1478, 1871, 1952, 2424 |
| BstNSI | RCATGY | 4 cut(s) | 43, 961, 1844, 2089 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1347 |
| BstSFI | CTRYAG | 4 cut(s) | 590, 1554, 1928, 2321 |
| BstSLI | GKGCMC | 4 cut(s) | 628, 858, 900, 1693 |
| BstUI | CGCG | 8 cut(s) | 121, 351, 438, 440, 873, 1299, 1626, 2220 |
| BstV2I | GAAGAC | 1 cut(s) | 515 |
| BstX2I | RGATCY | 1 cut(s) | 1498 |
| BstYI | RGATCY | 1 cut(s) | 1498 |
| BstZI | CGGCCG | 3 cut(s) | 660, 1614, 2109 |
| Bsu15I | ATCGAT | 1 cut(s) | 2357 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1130, 1728 |
| BsuI | GTATCC | 1 cut(s) | 396 |
| BsuTUI | ATCGAT | 1 cut(s) | 2357 |
| BtgI | CCRYGG | 6 cut(s) | 602, 1020, 1173, 1674, 2235, 2301 |
| BtsCI | GGATG | 5 cut(s) | 321, 741, 1248, 1675, 1767 |
| BtsI | GCAGTG | 2 cut(s) | 522, 560 |
| BtsIMutI | CAGTG | 3 cut(s) | 522, 560, 843 |
| BveI | ACCTGC | 1 cut(s) | 179 |
| CciNI | GCGGCCGC | 2 cut(s) | 660, 2109 |
| CfoI | GCGC | 7 cut(s) | 261, 351, 440, 979, 1065, 1111, 2222 |
| Cfr10I | RCCGGY | 5 cut(s) | 756, 1571, 1612, 2195, 2362 |
| ClaI | ATCGAT | 1 cut(s) | 2357 |
| CpoI | CGGWCCG | 1 cut(s) | 8 |
| CseI | GACGC | 7 cut(s) | 283, 422, 788, 1632, 1866, 1986, 2018 |
| Csp6I | GTAC | 9 cut(s) | 192, 477, 1031, 1054, 1147, 1189, 2245, 2263, 2403 |
| CspI | CGGWCCG | 1 cut(s) | 8 |
| CviAII | CATG | 6 cut(s) | 40, 958, 1841, 1859, 2086, 2302 |
| CviQI | GTAC | 9 cut(s) | 192, 477, 1031, 1054, 1147, 1189, 2245, 2263, 2403 |
| DdeI | CTNAG | 8 cut(s) | 271, 1091, 1130, 1535, 1728, 1907, 2201, 2208 |
| DpnI | GATC | 6 cut(s) | 138, 245, 830, 1121, 1500, 1770 |
| DpnII | GATC | 6 cut(s) | 136, 243, 828, 1119, 1498, 1768 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1141 |
| EaeI | YGGCCR | 5 cut(s) | 175, 660, 1614, 2025, 2109 |
| EagI | CGGCCG | 3 cut(s) | 660, 1614, 2109 |
| Eam1104I | CTCTTC | 2 cut(s) | 1284, 1656 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1141 |
| EarI | CTCTTC | 2 cut(s) | 1284, 1656 |
| EciI | GGCGGA | 7 cut(s) | 415, 792, 1040, 1339, 2273, 2379, 2481 |
| Ecl136II | GAGCTC | 2 cut(s) | 1906, 2205 |
| EclXI | CGGCCG | 3 cut(s) | 660, 1614, 2109 |
| Eco130I | CCWWGG | 5 cut(s) | 19, 722, 1102, 2115, 2301 |
| Eco24I | GRGCYC | 5 cut(s) | 158, 1218, 1693, 1908, 2207 |
| Eco31I | GGTCTC | 1 cut(s) | 67 |
| Eco47I | GGWCC | 6 cut(s) | 8, 1013, 1200, 1256, 1453, 1569 |
| Eco47III | AGCGCT | 1 cut(s) | 260 |
| Eco52I | CGGCCG | 3 cut(s) | 660, 1614, 2109 |
| Eco53kI | GAGCTC | 2 cut(s) | 1906, 2205 |
| Eco57I | CTGAAG | 2 cut(s) | 782, 2123 |
| Eco72I | CACGTG | 1 cut(s) | 1394 |
| Eco81I | CCTNAGG | 2 cut(s) | 1130, 1728 |
| Eco88I | CYCGRG | 2 cut(s) | 157, 383 |
| EcoICRI | GAGCTC | 2 cut(s) | 1906, 2205 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1985 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1689 |
| EcoRII | CCWGG | 9 cut(s) | 150, 172, 912, 1065, 1411, 1476, 1869, 1950, 2422 |
| EcoT14I | CCWWGG | 5 cut(s) | 19, 722, 1102, 2115, 2301 |
| EcoT38I | GRGCYC | 5 cut(s) | 158, 1218, 1693, 1908, 2207 |
| ErhI | CCWWGG | 5 cut(s) | 19, 722, 1102, 2115, 2301 |
| Esp3I | CGTCTC | 2 cut(s) | 1355, 1580 |
| FaeI | CATG | 6 cut(s) | 43, 961, 1844, 1862, 2089, 2305 |
| FaqI | GGGAC | 3 cut(s) | 192, 1148, 1582 |
| FatI | CATG | 6 cut(s) | 39, 957, 1840, 1858, 2085, 2301 |
| FokI | GGATG | 5 cut(s) | 328, 748, 1235, 1682, 1774 |
| FriOI | GRGCYC | 5 cut(s) | 158, 1218, 1693, 1908, 2207 |
| FspBI | CTAG | 5 cut(s) | 414, 575, 645, 1686, 2488 |
| GlaI | GCGC | 7 cut(s) | 260, 350, 439, 978, 1064, 1110, 2221 |
| GsaI | CCCAGC | 1 cut(s) | 1182 |
| GsuI | CTGGAG | 2 cut(s) | 1499, 1636 |
| HaeII | RGCGCY | 4 cut(s) | 262, 980, 1066, 1112 |
| HgaI | GACGC | 7 cut(s) | 283, 422, 788, 1632, 1866, 1986, 2018 |
| HhaI | GCGC | 7 cut(s) | 261, 351, 440, 979, 1065, 1111, 2222 |
| Hin1I | GRCGYC | 2 cut(s) | 1877, 1978 |
| Hin1II | CATG | 6 cut(s) | 43, 961, 1844, 1862, 2089, 2305 |
| Hin6I | GCGC | 7 cut(s) | 259, 349, 438, 977, 1063, 1109, 2220 |
| HinP1I | GCGC | 7 cut(s) | 259, 349, 438, 977, 1063, 1109, 2220 |
| HincII | GTYRAC | 1 cut(s) | 754 |
| HindII | GTYRAC | 1 cut(s) | 754 |
| HphI | GGTGA | 7 cut(s) | 146, 289, 802, 1553, 1823, 1837, 2198 |
| Hpy166II | GTNNAC | 6 cut(s) | 626, 754, 856, 1054, 1087, 1814 |
| Hpy188I | TCNGA | 5 cut(s) | 533, 1237, 1253, 1803, 2209 |
| Hpy188III | TCNNGA | 8 cut(s) | 313, 385, 635, 1123, 1283, 1727, 1772, 1881 |
| Hpy8I | GTNNAC | 6 cut(s) | 626, 754, 856, 1054, 1087, 1814 |
| Hpy99I | CGWCG | 5 cut(s) | 438, 495, 1101, 1626, 1980 |
| HpyCH4III | ACNGT | 7 cut(s) | 1021, 1558, 1811, 1849, 1997, 2064, 2178 |
| HpyCH4IV | ACGT | 5 cut(s) | 63, 479, 1056, 1220, 1393 |
| HpyF3I | CTNAG | 8 cut(s) | 271, 1091, 1130, 1535, 1728, 1907, 2201, 2208 |
| HpySE526I | ACGT | 5 cut(s) | 63, 479, 1056, 1220, 1393 |
| Hsp92I | GRCGYC | 2 cut(s) | 1877, 1978 |
| Hsp92II | CATG | 6 cut(s) | 43, 961, 1844, 1862, 2089, 2305 |
| HspAI | GCGC | 7 cut(s) | 259, 349, 438, 977, 1063, 1109, 2220 |
| Kpn2I | TCCGGA | 2 cut(s) | 312, 634 |
| KroI | GCCGGC | 2 cut(s) | 1612, 2195 |
| KroNI | GCCGGC | 2 cut(s) | 1614, 2197 |
| Kzo9I | GATC | 6 cut(s) | 136, 243, 828, 1119, 1498, 1768 |
| LweI | GCATC | 6 cut(s) | 93, 1423, 1660, 1990, 2349, 2363 |
| MaeI | CTAG | 5 cut(s) | 414, 575, 645, 1686, 2488 |
| MaeII | ACGT | 5 cut(s) | 63, 479, 1056, 1220, 1393 |
| MaeIII | GTNAC | 3 cut(s) | 295, 880, 1843 |
| MalI | GATC | 6 cut(s) | 138, 245, 830, 1121, 1500, 1770 |
| MbiI | CCGCTC | 3 cut(s) | 1900, 2053, 2408 |
| MboI | GATC | 6 cut(s) | 136, 243, 828, 1119, 1498, 1768 |
| MboII | GAAGA | 8 cut(s) | 90, 496, 520, 695, 1301, 1673, 1717, 2392 |
| MflI | RGATCY | 1 cut(s) | 1498 |
| MhlI | GDGCHC | 9 cut(s) | 158, 520, 628, 858, 900, 1218, 1693, 1908, 2207 |
| MluCI | AATT | 4 cut(s) | 288, 326, 1227, 2190 |
| MlyI | GAGTC | 8 cut(s) | 530, 1130, 1399, 1643, 1769, 2156, 2249, 2477 |
| MmeI | TCCRAC | 7 cut(s) | 346, 532, 1215, 1227, 1267, 2055, 2160 |
| MroI | TCCGGA | 2 cut(s) | 312, 634 |
| MroNI | GCCGGC | 2 cut(s) | 1612, 2195 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2136 |
| MseI | TTAA | 1 cut(s) | 1230 |
| MslI | CAYNNNNRTG | 2 cut(s) | 614, 1536 |
| MspA1I | CMGCKG | 9 cut(s) | 132, 396, 665, 714, 743, 892, 1656, 1739, 2143 |
| Mva1269I | GAATGC | 1 cut(s) | 1450 |
| MvaI | CCWGG | 9 cut(s) | 152, 174, 914, 1067, 1413, 1478, 1871, 1952, 2424 |
| MvnI | CGCG | 8 cut(s) | 121, 351, 438, 440, 873, 1299, 1626, 2220 |
| NaeI | GCCGGC | 2 cut(s) | 1614, 2197 |
| NciI | CCSGG | 2 cut(s) | 783, 1260 |
| NcoI | CCATGG | 1 cut(s) | 2301 |
| NdeII | GATC | 6 cut(s) | 136, 243, 828, 1119, 1498, 1768 |
| NgoMIV | GCCGGC | 2 cut(s) | 1612, 2195 |
| NlaIII | CATG | 6 cut(s) | 43, 961, 1844, 1862, 2089, 2305 |
| NmeAIII | GCCGAG | 3 cut(s) | 492, 1819, 2191 |
| NmuCI | GTSAC | 3 cut(s) | 295, 880, 1843 |
| NotI | GCGGCCGC | 2 cut(s) | 660, 2109 |
| NspI | RCATGY | 4 cut(s) | 43, 961, 1844, 2089 |
| PaeI | GCATGC | 1 cut(s) | 43 |
| PaeR7I | CTCGAG | 1 cut(s) | 157 |
| PciI | ACATGT | 2 cut(s) | 957, 2085 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 628, 1464 |
| PctI | GAATGC | 1 cut(s) | 1450 |
| PdiI | GCCGGC | 2 cut(s) | 1614, 2197 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2136 |
| PfeI | GAWTC | 2 cut(s) | 388, 1327 |
| Pfl23II | CGTACG | 1 cut(s) | 476 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 603, 960, 2343 |
| PfoI | TCCNGGA | 1 cut(s) | 1476 |
| PleI | GAGTC | 8 cut(s) | 530, 1130, 1399, 1643, 1769, 2155, 2248, 2477 |
| PmaCI | CACGTG | 1 cut(s) | 1394 |
| PmlI | CACGTG | 1 cut(s) | 1394 |
| PpsI | GAGTC | 8 cut(s) | 530, 1130, 1399, 1643, 1769, 2155, 2248, 2477 |
| Ppu21I | YACGTR | 3 cut(s) | 480, 1057, 1394 |
| PscI | ACATGT | 2 cut(s) | 957, 2085 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1347 |
| Psp124BI | GAGCTC | 2 cut(s) | 1908, 2207 |
| Psp6I | CCWGG | 9 cut(s) | 150, 172, 912, 1065, 1411, 1476, 1869, 1950, 2422 |
| PspCI | CACGTG | 1 cut(s) | 1394 |
| PspFI | CCCAGC | 1 cut(s) | 1178 |
| PspGI | CCWGG | 9 cut(s) | 150, 172, 912, 1065, 1411, 1476, 1869, 1950, 2422 |
| PspLI | CGTACG | 1 cut(s) | 476 |
| PspOMI | GGGCCC | 1 cut(s) | 1689 |
| PspXI | VCTCGAGB | 1 cut(s) | 157 |
| PstI | CTGCAG | 1 cut(s) | 2325 |
| PsuI | RGATCY | 1 cut(s) | 1498 |
| PvuII | CAGCTG | 1 cut(s) | 396 |
| RsaI | GTAC | 9 cut(s) | 193, 478, 1032, 1055, 1148, 1190, 2246, 2264, 2404 |
| RsaNI | GTAC | 9 cut(s) | 192, 477, 1031, 1054, 1147, 1189, 2245, 2263, 2403 |
| RseI | CAYNNNNRTG | 2 cut(s) | 614, 1536 |
| Rsr2I | CGGWCCG | 1 cut(s) | 8 |
| RsrII | CGGWCCG | 1 cut(s) | 8 |
| SacI | GAGCTC | 2 cut(s) | 1908, 2207 |
| SaqAI | TTAA | 1 cut(s) | 1230 |
| Sau3AI | GATC | 6 cut(s) | 136, 243, 828, 1119, 1498, 1768 |
| SchI | GAGTC | 8 cut(s) | 530, 1130, 1399, 1643, 1769, 2156, 2249, 2477 |
| SduI | GDGCHC | 9 cut(s) | 158, 520, 628, 858, 900, 1218, 1693, 1908, 2207 |
| SfaNI | GCATC | 6 cut(s) | 93, 1423, 1660, 1990, 2349, 2363 |
| SfcI | CTRYAG | 4 cut(s) | 590, 1554, 1928, 2321 |
| Sfr274I | CTCGAG | 1 cut(s) | 157 |
| SinI | GGWCC | 6 cut(s) | 8, 1013, 1200, 1256, 1453, 1569 |
| SlaI | CTCGAG | 1 cut(s) | 157 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 614, 1536 |
| SmlI | CTYRAG | 2 cut(s) | 157, 1283 |
| SmoI | CTYRAG | 2 cut(s) | 157, 1283 |
| SphI | GCATGC | 1 cut(s) | 43 |
| Sse9I | AATT | 4 cut(s) | 288, 326, 1227, 2190 |
| SspMI | CTAG | 5 cut(s) | 414, 575, 645, 1686, 2488 |
| SstI | GAGCTC | 2 cut(s) | 1908, 2207 |
| StyI | CCWWGG | 5 cut(s) | 19, 722, 1102, 2115, 2301 |
| TaaI | ACNGT | 7 cut(s) | 1021, 1558, 1811, 1849, 1997, 2064, 2178 |
| TaiI | ACGT | 5 cut(s) | 66, 482, 1059, 1223, 1396 |
| TaqII | GACCGA | 2 cut(s) | 1030, 2294 |
| TasI | AATT | 4 cut(s) | 288, 326, 1227, 2190 |
| TatI | WGTACW | 1 cut(s) | 2262 |
| TfiI | GAWTC | 2 cut(s) | 388, 1327 |
| Tru1I | TTAA | 1 cut(s) | 1230 |
| Tru9I | TTAA | 1 cut(s) | 1230 |
| TscAI | CASTG | 3 cut(s) | 529, 567, 843 |
| TseFI | GTSAC | 3 cut(s) | 295, 880, 1843 |
| Tsp45I | GTSAC | 3 cut(s) | 295, 880, 1843 |
| TspDTI | ATGAA | 3 cut(s) | 896, 1875, 2073 |
| TspGWI | ACGGA | 4 cut(s) | 21, 591, 1337, 1567 |
| TspRI | CASTG | 3 cut(s) | 529, 567, 843 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 603, 960, 2343 |
| VneI | GTGCAC | 2 cut(s) | 624, 854 |
| VpaK11BI | GGWCC | 6 cut(s) | 8, 1013, 1200, 1256, 1453, 1569 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1985 |
| XceI | RCATGY | 4 cut(s) | 43, 961, 1844, 2089 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 170 |
| XhoI | CTCGAG | 1 cut(s) | 157 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2136 |
| XspI | CTAG | 5 cut(s) | 414, 575, 645, 1686, 2488 |