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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 988, 1093 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 998 |
| AccBSI | CCGCTC | 4 cut(s) | 433, 571, 712, 724 |
| AccII | CGCG | 4 cut(s) | 109, 211, 285, 891 |
| AclWI | GGATC | 1 cut(s) | 780 |
| AcoI | YGGCCR | 4 cut(s) | 99, 696, 780, 897 |
| AcuI | CTGAAG | 2 cut(s) | 478, 794 |
| AcyI | GRCGYC | 4 cut(s) | 548, 681, 989, 1009 |
| AfaI | GTAC | 5 cut(s) | 352, 465, 499, 917, 1059 |
| AflIII | ACRYGT | 1 cut(s) | 756 |
| AgsI | TTSAA | 2 cut(s) | 803, 1090 |
| AjiI | CACGTC | 2 cut(s) | 334, 514 |
| AjnI | CCWGG | 6 cut(s) | 360, 450, 540, 621, 956, 1077 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 396, 428 |
| AluBI | AGCT | 5 cut(s) | 140, 377, 577, 850, 1042 |
| AluI | AGCT | 5 cut(s) | 140, 377, 577, 850, 1042 |
| Alw21I | GWGCWC | 1 cut(s) | 579 |
| AlwI | GGATC | 1 cut(s) | 780 |
| Ama87I | CYCGRG | 3 cut(s) | 317, 1101, 1199 |
| ApaI | GGGCCC | 1 cut(s) | 283 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 166, 198, 217, 249 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 807 |
| AspLEI | GCGC | 6 cut(s) | 79, 97, 135, 893, 991, 1065 |
| AspS9I | GGNCC | 5 cut(s) | 279, 280, 595, 619, 953 |
| AsuC2I | CCSGG | 3 cut(s) | 1129, 1200, 1201 |
| AsuHPI | GGTGA | 4 cut(s) | 38, 76, 413, 869 |
| AvaI | CYCGRG | 3 cut(s) | 317, 1101, 1199 |
| AvaII | GGWCC | 1 cut(s) | 953 |
| BaeGI | GKGCMC | 2 cut(s) | 283, 513 |
| BalI | TGGCCA | 1 cut(s) | 782 |
| BanI | GGYRCC | 2 cut(s) | 988, 1093 |
| BanII | GRGCYC | 2 cut(s) | 283, 579 |
| Bbv12I | GWGCWC | 1 cut(s) | 579 |
| BccI | CCATC | 3 cut(s) | 23, 1000, 1201 |
| BceAI | ACGGC | 5 cut(s) | 179, 216, 461, 516, 683 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 308, 342 |
| BciT130I | CCWGG | 6 cut(s) | 362, 452, 542, 623, 958, 1079 |
| BcnI | CCSGG | 3 cut(s) | 1129, 1200, 1201 |
| BfaI | CTAG | 1 cut(s) | 872 |
| BfmI | CTRYAG | 2 cut(s) | 39, 976 |
| BfoI | RGCGCY | 2 cut(s) | 98, 992 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 833 |
| BmcAI | AGTACT | 1 cut(s) | 1059 |
| Bme1390I | CCNGG | 9 cut(s) | 362, 452, 542, 623, 958, 1079, 1129, 1200, 1201 |
| Bme18I | GGWCC | 1 cut(s) | 953 |
| BmeT110I | CYCGRG | 3 cut(s) | 317, 1101, 1199 |
| BmgBI | CACGTC | 2 cut(s) | 334, 514 |
| BmgT120I | GGNCC | 5 cut(s) | 279, 280, 595, 619, 953 |
| BmiI | GGNNCC | 7 cut(s) | 168, 280, 281, 324, 955, 990, 1095 |
| BmrFI | CCNGG | 9 cut(s) | 362, 452, 542, 623, 958, 1079, 1129, 1200, 1201 |
| BmrI | ACTGGG | 3 cut(s) | 285, 1008, 1152 |
| BmsI | GCATC | 2 cut(s) | 661, 1004 |
| BmuI | ACTGGG | 3 cut(s) | 285, 1008, 1152 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1123, 1155 |
| BpmI | CTGGAG | 2 cut(s) | 473, 872 |
| Bpu10I | CCTNAGC | 1 cut(s) | 578 |
| BpuMI | CCSGG | 3 cut(s) | 1129, 1200, 1201 |
| BsaHI | GRCGYC | 4 cut(s) | 548, 681, 989, 1009 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 401, 431 |
| Bse118I | RCCGGY | 3 cut(s) | 97, 950, 1017 |
| Bse1I | ACTGG | 3 cut(s) | 280, 1003, 1158 |
| BseBI | CCWGG | 6 cut(s) | 362, 452, 542, 623, 958, 1079 |
| BseGI | GGATG | 1 cut(s) | 1212 |
| BseMII | CTCAG | 2 cut(s) | 592, 1156 |
| BseNI | ACTGG | 3 cut(s) | 280, 1003, 1158 |
| BseRI | GAGGAG | 2 cut(s) | 272, 599 |
| BseSI | GKGCMC | 2 cut(s) | 283, 513 |
| BseX3I | CGGCCG | 1 cut(s) | 897 |
| BseYI | CCCAGC | 3 cut(s) | 136, 140, 1177 |
| BsgI | GTGCAG | 1 cut(s) | 137 |
| Bsh1236I | CGCG | 4 cut(s) | 109, 211, 285, 891 |
| Bsh1285I | CGRYCG | 3 cut(s) | 474, 900, 1022 |
| BshNI | GGYRCC | 2 cut(s) | 988, 1093 |
| BsiEI | CGRYCG | 3 cut(s) | 474, 900, 1022 |
| BsiHKAI | GWGCWC | 1 cut(s) | 579 |
| BsiHKCI | CYCGRG | 3 cut(s) | 317, 1101, 1199 |
| BsiSI | CCGG | 6 cut(s) | 98, 246, 951, 1018, 1129, 1200 |
| BslFI | GGGAC | 4 cut(s) | 67, 620, 745, 939 |
| BsmFI | GGGAC | 4 cut(s) | 67, 620, 745, 939 |
| BsoBI | CYCGRG | 3 cut(s) | 317, 1101, 1199 |
| Bsp120I | GGGCCC | 1 cut(s) | 279 |
| Bsp1286I | GDGCHC | 3 cut(s) | 283, 513, 579 |
| Bsp143I | GATC | 1 cut(s) | 772 |
| BspCNI | CTCAG | 2 cut(s) | 591, 1155 |
| BspFNI | CGCG | 4 cut(s) | 109, 211, 285, 891 |
| BspLI | GGNNCC | 7 cut(s) | 168, 280, 281, 324, 955, 990, 1095 |
| BspMAI | CTGCAG | 2 cut(s) | 43, 980 |
| BspPI | GGATC | 1 cut(s) | 780 |
| BspT107I | GGYRCC | 2 cut(s) | 988, 1093 |
| BsrBI | CCGCTC | 4 cut(s) | 433, 571, 712, 724 |
| BsrFI | RCCGGY | 3 cut(s) | 97, 950, 1017 |
| BsrI | ACTGG | 3 cut(s) | 280, 1003, 1158 |
| BssAI | RCCGGY | 3 cut(s) | 97, 950, 1017 |
| BssMI | GATC | 1 cut(s) | 772 |
| BssNI | GRCGYC | 4 cut(s) | 548, 681, 989, 1009 |
| BssT1I | CCWWGG | 2 cut(s) | 786, 906 |
| Bst2UI | CCWGG | 6 cut(s) | 362, 452, 542, 623, 958, 1079 |
| Bst4CI | ACNGT | 2 cut(s) | 401, 668 |
| Bst6I | CTCTTC | 1 cut(s) | 249 |
| BstACI | GRCGYC | 4 cut(s) | 548, 681, 989, 1009 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 380 |
| BstDEI | CTNAG | 2 cut(s) | 578, 1142 |
| BstDSI | CCRYGG | 1 cut(s) | 685 |
| BstF5I | GGATG | 1 cut(s) | 1212 |
| BstFNI | CGCG | 4 cut(s) | 109, 211, 285, 891 |
| BstH2I | RGCGCY | 2 cut(s) | 98, 992 |
| BstHHI | GCGC | 6 cut(s) | 79, 97, 135, 893, 991, 1065 |
| BstKTI | GATC | 1 cut(s) | 775 |
| BstMBI | GATC | 1 cut(s) | 772 |
| BstMCI | CGRYCG | 3 cut(s) | 474, 900, 1022 |
| BstNI | CCWGG | 6 cut(s) | 362, 452, 542, 623, 958, 1079 |
| BstNSI | RCATGY | 1 cut(s) | 760 |
| BstSCI | CCNGG | 9 cut(s) | 360, 450, 540, 621, 956, 1077, 1127, 1198, 1199 |
| BstSFI | CTRYAG | 2 cut(s) | 39, 976 |
| BstSLI | GKGCMC | 2 cut(s) | 283, 513 |
| BstUI | CGCG | 4 cut(s) | 109, 211, 285, 891 |
| BstZI | CGGCCG | 1 cut(s) | 897 |
| BtgI | CCRYGG | 1 cut(s) | 685 |
| BtrI | CACGTC | 2 cut(s) | 334, 514 |
| BtsCI | GGATG | 1 cut(s) | 1212 |
| BtsI | GCAGTG | 1 cut(s) | 135 |
| BtsIMutI | CAGTG | 2 cut(s) | 135, 406 |
| CciNI | GCGGCCGC | 1 cut(s) | 897 |
| CfoI | GCGC | 6 cut(s) | 79, 97, 135, 893, 991, 1065 |
| Cfr10I | RCCGGY | 3 cut(s) | 97, 950, 1017 |
| Cfr13I | GGNCC | 5 cut(s) | 279, 280, 595, 619, 953 |
| Cfr9I | CCCGGG | 1 cut(s) | 1199 |
| CseI | GACGC | 4 cut(s) | 537, 657, 689, 998 |
| Csp6I | GTAC | 5 cut(s) | 351, 464, 498, 916, 1058 |
| CviAII | CATG | 3 cut(s) | 530, 757, 1174 |
| CviQI | GTAC | 5 cut(s) | 351, 464, 498, 916, 1058 |
| DdeI | CTNAG | 2 cut(s) | 578, 1142 |
| DinI | GGCGCC | 1 cut(s) | 990 |
| DpnI | GATC | 1 cut(s) | 774 |
| DpnII | GATC | 1 cut(s) | 772 |
| EaeI | YGGCCR | 4 cut(s) | 99, 696, 780, 897 |
| EagI | CGGCCG | 1 cut(s) | 897 |
| Eam1104I | CTCTTC | 1 cut(s) | 249 |
| EarI | CTCTTC | 1 cut(s) | 249 |
| EciI | GGCGGA | 1 cut(s) | 1034 |
| Ecl136II | GAGCTC | 1 cut(s) | 577 |
| EclXI | CGGCCG | 1 cut(s) | 897 |
| Eco130I | CCWWGG | 2 cut(s) | 786, 906 |
| Eco147I | AGGCCT | 1 cut(s) | 190 |
| Eco24I | GRGCYC | 2 cut(s) | 283, 579 |
| Eco47I | GGWCC | 1 cut(s) | 953 |
| Eco52I | CGGCCG | 1 cut(s) | 897 |
| Eco53kI | GAGCTC | 1 cut(s) | 577 |
| Eco57I | CTGAAG | 2 cut(s) | 478, 794 |
| Eco88I | CYCGRG | 3 cut(s) | 317, 1101, 1199 |
| EcoICRI | GAGCTC | 1 cut(s) | 577 |
| EcoO109I | RGGNCCY | 1 cut(s) | 279 |
| EcoRII | CCWGG | 6 cut(s) | 360, 450, 540, 621, 956, 1077 |
| EcoT14I | CCWWGG | 2 cut(s) | 786, 906 |
| EcoT38I | GRGCYC | 2 cut(s) | 283, 579 |
| EgeI | GGCGCC | 1 cut(s) | 990 |
| EheI | GGCGCC | 1 cut(s) | 990 |
| ErhI | CCWWGG | 2 cut(s) | 786, 906 |
| FaeI | CATG | 3 cut(s) | 533, 760, 1177 |
| FaiI | YATR | 6 cut(s) | 104, 155, 381, 531, 758, 1175 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 295, 327 |
| FaqI | GGGAC | 4 cut(s) | 67, 620, 745, 939 |
| FatI | CATG | 3 cut(s) | 529, 756, 1173 |
| FriOI | GRGCYC | 2 cut(s) | 283, 579 |
| FspBI | CTAG | 1 cut(s) | 872 |
| GlaI | GCGC | 6 cut(s) | 78, 96, 134, 892, 990, 1064 |
| GsaI | CCCAGC | 3 cut(s) | 140, 144, 1181 |
| GsuI | CTGGAG | 2 cut(s) | 473, 872 |
| HaeII | RGCGCY | 2 cut(s) | 98, 992 |
| HapII | CCGG | 6 cut(s) | 98, 246, 951, 1018, 1129, 1200 |
| HgaI | GACGC | 4 cut(s) | 537, 657, 689, 998 |
| HhaI | GCGC | 6 cut(s) | 79, 97, 135, 893, 991, 1065 |
| Hin1I | GRCGYC | 4 cut(s) | 548, 681, 989, 1009 |
| Hin1II | CATG | 3 cut(s) | 533, 760, 1177 |
| Hin6I | GCGC | 6 cut(s) | 77, 95, 133, 891, 989, 1063 |
| HinP1I | GCGC | 6 cut(s) | 77, 95, 133, 891, 989, 1063 |
| HincII | GTYRAC | 2 cut(s) | 236, 481 |
| HindII | GTYRAC | 2 cut(s) | 236, 481 |
| HinfI | GANTC | 6 cut(s) | 242, 365, 886, 911, 1138, 1149 |
| HpaI | GTTAAC | 1 cut(s) | 481 |
| HpaII | CCGG | 6 cut(s) | 98, 246, 951, 1018, 1129, 1200 |
| HphI | GGTGA | 4 cut(s) | 38, 76, 413, 869 |
| Hpy166II | GTNNAC | 3 cut(s) | 236, 404, 481 |
| Hpy188I | TCNGA | 1 cut(s) | 1164 |
| Hpy188III | TCNNGA | 2 cut(s) | 47, 391 |
| Hpy8I | GTNNAC | 3 cut(s) | 236, 404, 481 |
| Hpy99I | CGWCG | 5 cut(s) | 178, 200, 518, 651, 1014 |
| HpyAV | CCTTC | 9 cut(s) | 292, 502, 790, 818, 919, 940, 999, 1029, 1084 |
| HpyCH4III | ACNGT | 2 cut(s) | 401, 668 |
| HpyCH4IV | ACGT | 2 cut(s) | 333, 513 |
| HpyCH4V | TGCA | 5 cut(s) | 41, 118, 374, 529, 978 |
| HpyF3I | CTNAG | 2 cut(s) | 578, 1142 |
| HpySE526I | ACGT | 2 cut(s) | 333, 513 |
| Hsp92I | GRCGYC | 4 cut(s) | 548, 681, 989, 1009 |
| Hsp92II | CATG | 3 cut(s) | 533, 760, 1177 |
| HspAI | GCGC | 6 cut(s) | 77, 95, 133, 891, 989, 1063 |
| KasI | GGCGCC | 1 cut(s) | 988 |
| KroI | GCCGGC | 1 cut(s) | 97 |
| KroNI | GCCGGC | 1 cut(s) | 99 |
| KspAI | GTTAAC | 1 cut(s) | 481 |
| Kzo9I | GATC | 1 cut(s) | 772 |
| LmnI | GCTCC | 6 cut(s) | 166, 328, 574, 721, 748, 1047 |
| LweI | GCATC | 2 cut(s) | 661, 1004 |
| MaeI | CTAG | 1 cut(s) | 872 |
| MaeII | ACGT | 2 cut(s) | 333, 513 |
| MaeIII | GTNAC | 1 cut(s) | 148 |
| MalI | GATC | 1 cut(s) | 774 |
| MbiI | CCGCTC | 4 cut(s) | 433, 571, 712, 724 |
| MboI | GATC | 1 cut(s) | 772 |
| MboII | GAAGA | 3 cut(s) | 133, 266, 307 |
| MhlI | GDGCHC | 3 cut(s) | 283, 513, 579 |
| MlsI | TGGCCA | 1 cut(s) | 782 |
| MluCI | AATT | 1 cut(s) | 734 |
| MluNI | TGGCCA | 1 cut(s) | 782 |
| Mly113I | GGCGCC | 1 cut(s) | 989 |
| MlyI | GAGTC | 6 cut(s) | 236, 359, 895, 920, 1132, 1143 |
| MmeI | TCCRAC | 2 cut(s) | 144, 726 |
| Mox20I | TGGCCA | 1 cut(s) | 782 |
| MroNI | GCCGGC | 1 cut(s) | 97 |
| MroXI | GAANNNNTTC | 1 cut(s) | 807 |
| MscI | TGGCCA | 1 cut(s) | 782 |
| MseI | TTAA | 2 cut(s) | 480, 843 |
| MslI | CAYNNNNRTG | 1 cut(s) | 21 |
| Msp20I | TGGCCA | 1 cut(s) | 782 |
| MspA1I | CMGCKG | 5 cut(s) | 82, 140, 814, 850, 1146 |
| MspI | CCGG | 6 cut(s) | 98, 246, 951, 1018, 1129, 1200 |
| MspR9I | CCNGG | 9 cut(s) | 362, 452, 542, 623, 958, 1079, 1129, 1200, 1201 |
| MvaI | CCWGG | 6 cut(s) | 362, 452, 542, 623, 958, 1079 |
| MvnI | CGCG | 4 cut(s) | 109, 211, 285, 891 |
| NaeI | GCCGGC | 1 cut(s) | 99 |
| NarI | GGCGCC | 1 cut(s) | 989 |
| NciI | CCSGG | 3 cut(s) | 1129, 1200, 1201 |
| NdeII | GATC | 1 cut(s) | 772 |
| NgoMIV | GCCGGC | 1 cut(s) | 97 |
| NlaIII | CATG | 3 cut(s) | 533, 760, 1177 |
| NlaIV | GGNNCC | 7 cut(s) | 168, 280, 281, 324, 955, 990, 1095 |
| NmeAIII | GCCGAG | 2 cut(s) | 409, 862 |
| NotI | GCGGCCGC | 1 cut(s) | 897 |
| NspI | RCATGY | 1 cut(s) | 760 |
| PceI | AGGCCT | 1 cut(s) | 190 |
| PciI | ACATGT | 1 cut(s) | 756 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 182 |
| PdiI | GCCGGC | 1 cut(s) | 99 |
| PdmI | GAANNNNTTC | 1 cut(s) | 807 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 998 |
| PfoI | TCCNGGA | 1 cut(s) | 1127 |
| PleI | GAGTC | 6 cut(s) | 236, 359, 894, 919, 1132, 1143 |
| PluTI | GGCGCC | 1 cut(s) | 992 |
| PpsI | GAGTC | 6 cut(s) | 236, 359, 894, 919, 1132, 1143 |
| PscI | ACATGT | 1 cut(s) | 756 |
| Psp124BI | GAGCTC | 1 cut(s) | 579 |
| Psp6I | CCWGG | 6 cut(s) | 360, 450, 540, 621, 956, 1077 |
| PspFI | CCCAGC | 3 cut(s) | 136, 140, 1177 |
| PspGI | CCWGG | 6 cut(s) | 360, 450, 540, 621, 956, 1077 |
| PspN4I | GGNNCC | 7 cut(s) | 168, 280, 281, 324, 955, 990, 1095 |
| PspOMI | GGGCCC | 1 cut(s) | 279 |
| PspPI | GGNCC | 5 cut(s) | 279, 280, 595, 619, 953 |
| PstI | CTGCAG | 2 cut(s) | 43, 980 |
| PvuII | CAGCTG | 2 cut(s) | 140, 850 |
| RsaI | GTAC | 5 cut(s) | 352, 465, 499, 917, 1059 |
| RsaNI | GTAC | 5 cut(s) | 351, 464, 498, 916, 1058 |
| RseI | CAYNNNNRTG | 1 cut(s) | 21 |
| SacI | GAGCTC | 1 cut(s) | 579 |
| SaqAI | TTAA | 2 cut(s) | 480, 843 |
| Sau3AI | GATC | 1 cut(s) | 772 |
| Sau96I | GGNCC | 5 cut(s) | 279, 280, 595, 619, 953 |
| ScaI | AGTACT | 1 cut(s) | 1059 |
| SchI | GAGTC | 6 cut(s) | 236, 359, 895, 920, 1132, 1143 |
| ScrFI | CCNGG | 9 cut(s) | 362, 452, 542, 623, 958, 1079, 1129, 1200, 1201 |
| SduI | GDGCHC | 3 cut(s) | 283, 513, 579 |
| SfaNI | GCATC | 2 cut(s) | 661, 1004 |
| SfcI | CTRYAG | 2 cut(s) | 39, 976 |
| SfoI | GGCGCC | 1 cut(s) | 990 |
| SinI | GGWCC | 1 cut(s) | 953 |
| SmaI | CCCGGG | 1 cut(s) | 1201 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 21 |
| Sse9I | AATT | 1 cut(s) | 734 |
| SseBI | AGGCCT | 1 cut(s) | 190 |
| SspDI | GGCGCC | 1 cut(s) | 988 |
| SspMI | CTAG | 1 cut(s) | 872 |
| SstI | GAGCTC | 1 cut(s) | 579 |
| StuI | AGGCCT | 1 cut(s) | 190 |
| StyD4I | CCNGG | 9 cut(s) | 360, 450, 540, 621, 956, 1077, 1127, 1198, 1199 |
| StyI | CCWWGG | 2 cut(s) | 786, 906 |
| TaaI | ACNGT | 2 cut(s) | 401, 668 |
| TaiI | ACGT | 2 cut(s) | 336, 516 |
| TaqI | TCGA | 4 cut(s) | 185, 642, 995, 1012 |
| TasI | AATT | 1 cut(s) | 734 |
| TatI | WGTACW | 1 cut(s) | 1057 |
| Tru1I | TTAA | 2 cut(s) | 480, 843 |
| Tru9I | TTAA | 2 cut(s) | 480, 843 |
| TscAI | CASTG | 2 cut(s) | 135, 406 |
| TspGWI | ACGGA | 1 cut(s) | 481 |
| TspMI | CCCGGG | 1 cut(s) | 1199 |
| TspRI | CASTG | 2 cut(s) | 135, 406 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 998 |
| VpaK11BI | GGWCC | 1 cut(s) | 953 |
| XceI | RCATGY | 1 cut(s) | 760 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 17, 160 |
| XmaI | CCCGGG | 1 cut(s) | 1199 |
| XmnI | GAANNNNTTC | 1 cut(s) | 807 |
| XspI | CTAG | 1 cut(s) | 872 |
| ZrmI | AGTACT | 1 cut(s) | 1059 |