Putative gypsy type transposon
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 417, 649 |
| AatII | GACGTC | 1 cut(s) | 1532 |
| Acc36I | ACCTGC | 2 cut(s) | 417, 649 |
| AccB1I | GGYRCC | 5 cut(s) | 639, 685, 1091, 1262, 1629 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 490 |
| AccBSI | CCGCTC | 5 cut(s) | 1552, 1693, 1705, 2039, 2072 |
| AccI | GTMKAC | 1 cut(s) | 925 |
| AccII | CGCG | 3 cut(s) | 856, 1343, 1892 |
| AccIII | TCCGGA | 1 cut(s) | 1021 |
| AclWI | GGATC | 5 cut(s) | 1013, 1258, 1266, 1279, 1761 |
| AcoI | YGGCCR | 4 cut(s) | 948, 1303, 1677, 2022 |
| AcsI | RAATTY | 5 cut(s) | 500, 522, 703, 815, 882 |
| AcuI | CTGAAG | 3 cut(s) | 1274, 1769, 1938 |
| AcyI | GRCGYC | 5 cut(s) | 640, 686, 1263, 1529, 1850 |
| AdeI | CACNNNGTG | 2 cut(s) | 936, 1516 |
| AfaI | GTAC | 2 cut(s) | 983, 2047 |
| AflIII | ACRYGT | 2 cut(s) | 534, 854 |
| AgsI | TTSAA | 1 cut(s) | 709 |
| AjiI | CACGTC | 1 cut(s) | 1717 |
| AjnI | CCWGG | 3 cut(s) | 320, 1698, 1854 |
| AleI | CACNNNNGTG | 3 cut(s) | 1089, 1280, 1820 |
| AluBI | AGCT | 5 cut(s) | 943, 1479, 1591, 1675, 1726 |
| AluI | AGCT | 5 cut(s) | 943, 1479, 1591, 1675, 1726 |
| Alw21I | GWGCWC | 2 cut(s) | 435, 1927 |
| Alw26I | GTCTC | 7 cut(s) | 1019, 1340, 1583, 1592, 1723, 2008, 2123 |
| Alw44I | GTGCAC | 1 cut(s) | 431 |
| AlwI | GGATC | 5 cut(s) | 1013, 1258, 1266, 1279, 1761 |
| Ama87I | CYCGRG | 2 cut(s) | 22, 2034 |
| Aor13HI | TCCGGA | 1 cut(s) | 1021 |
| ApaI | GGGCCC | 1 cut(s) | 1360 |
| ApaLI | GTGCAC | 1 cut(s) | 431 |
| ApeKI | GCWGC | 6 cut(s) | 377, 870, 1072, 1112, 1507, 1655 |
| ApoI | RAATTY | 5 cut(s) | 500, 522, 703, 815, 882 |
| AseI | ATTAAT | 1 cut(s) | 626 |
| AspA2I | CCTAGG | 1 cut(s) | 973 |
| AspLEI | GCGC | 7 cut(s) | 556, 642, 688, 843, 1036, 1265, 1449 |
| AsuC2I | CCSGG | 1 cut(s) | 1544 |
| AsuHPI | GGTGA | 8 cut(s) | 262, 298, 673, 714, 1076, 1399, 1461, 1834 |
| AsuNHI | GCTAGC | 2 cut(s) | 5, 266 |
| AvaI | CYCGRG | 2 cut(s) | 22, 2034 |
| AvaII | GGWCC | 6 cut(s) | 590, 735, 1102, 1696, 1977, 2079 |
| AvrII | CCTAGG | 1 cut(s) | 973 |
| BaeGI | GKGCMC | 2 cut(s) | 435, 1360 |
| BalI | TGGCCA | 1 cut(s) | 1305 |
| BamHI | GGATCC | 1 cut(s) | 1271 |
| BanI | GGYRCC | 5 cut(s) | 639, 685, 1091, 1262, 1629 |
| BanII | GRGCYC | 3 cut(s) | 973, 1360, 2066 |
| BauI | CACGAG | 2 cut(s) | 434, 966 |
| Bbv12I | GWGCWC | 2 cut(s) | 435, 1927 |
| BbvI | GCAGC | 6 cut(s) | 364, 857, 1084, 1099, 1494, 1642 |
| BccI | CCATC | 6 cut(s) | 103, 544, 753, 1358, 2057, 2135 |
| BceAI | ACGGC | 4 cut(s) | 1664, 1670, 1852, 2079 |
| BciT130I | CCWGG | 3 cut(s) | 322, 1700, 1856 |
| BclI | TGATCA | 2 cut(s) | 1462, 1711 |
| BcnI | CCSGG | 1 cut(s) | 1544 |
| BcoDI | GTCTC | 7 cut(s) | 1019, 1340, 1583, 1592, 1723, 2008, 2123 |
| BfaI | CTAG | 8 cut(s) | 6, 131, 201, 267, 974, 1433, 1523, 1727 |
| BfmI | CTRYAG | 1 cut(s) | 1143 |
| BfoI | RGCGCY | 5 cut(s) | 557, 643, 689, 1037, 1266 |
| BfuAI | ACCTGC | 2 cut(s) | 417, 649 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 418 |
| BglII | AGATCT | 1 cut(s) | 1785 |
| BlnI | CCTAGG | 1 cut(s) | 973 |
| BlpI | GCTNAGC | 1 cut(s) | 1480 |
| Bme1390I | CCNGG | 4 cut(s) | 322, 1544, 1700, 1856 |
| Bme18I | GGWCC | 6 cut(s) | 590, 735, 1102, 1696, 1977, 2079 |
| BmeT110I | CYCGRG | 2 cut(s) | 22, 2034 |
| BmgBI | CACGTC | 1 cut(s) | 1717 |
| BmrFI | CCNGG | 4 cut(s) | 322, 1544, 1700, 1856 |
| BmrI | ACTGGG | 1 cut(s) | 942 |
| BmsI | GCATC | 5 cut(s) | 205, 1059, 1501, 1642, 1651 |
| BmtI | GCTAGC | 2 cut(s) | 9, 270 |
| BmuI | ACTGGG | 1 cut(s) | 942 |
| BoxI | GACNNNNGTC | 1 cut(s) | 921 |
| BpmI | CTGGAG | 5 cut(s) | 467, 1141, 1256, 1721, 1853 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1767 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1480 |
| BpuEI | CTTGAG | 1 cut(s) | 1915 |
| BpuMI | CCSGG | 1 cut(s) | 1544 |
| BsaHI | GRCGYC | 5 cut(s) | 640, 686, 1263, 1529, 1850 |
| BsaI | GGTCTC | 4 cut(s) | 1340, 1583, 1592, 2008 |
| BsaWI | WCCGGW | 2 cut(s) | 1021, 1957 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1369, 1399, 1969, 1999 |
| Bse118I | RCCGGY | 2 cut(s) | 1094, 1207 |
| Bse1I | ACTGG | 4 cut(s) | 301, 937, 1035, 1284 |
| Bse3DI | GCAATG | 1 cut(s) | 1224 |
| BseAI | TCCGGA | 1 cut(s) | 1021 |
| BseBI | CCWGG | 3 cut(s) | 322, 1700, 1856 |
| BseGI | GGATG | 4 cut(s) | 119, 764, 1666, 1969 |
| BseMI | GCAATG | 1 cut(s) | 1224 |
| BseNI | ACTGG | 4 cut(s) | 301, 937, 1035, 1284 |
| BseRI | GAGGAG | 4 cut(s) | 254, 1309, 1340, 1580 |
| BseSI | GKGCMC | 2 cut(s) | 435, 1360 |
| BseXI | GCAGC | 6 cut(s) | 364, 857, 1084, 1099, 1494, 1642 |
| BseYI | CCCAGC | 3 cut(s) | 1229, 1591, 1862 |
| BsgI | GTGCAG | 1 cut(s) | 1493 |
| Bsh1236I | CGCG | 3 cut(s) | 856, 1343, 1892 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1455 |
| BshNI | GGYRCC | 5 cut(s) | 639, 685, 1091, 1262, 1629 |
| BsiEI | CGRYCG | 1 cut(s) | 1455 |
| BsiHKAI | GWGCWC | 2 cut(s) | 435, 1927 |
| BsiHKCI | CYCGRG | 2 cut(s) | 22, 2034 |
| BsiSI | CCGG | 7 cut(s) | 756, 1022, 1095, 1208, 1543, 1958, 2120 |
| BslFI | GGGAC | 4 cut(s) | 748, 1349, 1709, 1837 |
| BsmAI | GTCTC | 7 cut(s) | 1019, 1340, 1583, 1592, 1723, 2008, 2123 |
| BsmBI | CGTCTC | 1 cut(s) | 1723 |
| BsmFI | GGGAC | 4 cut(s) | 748, 1349, 1709, 1837 |
| BsmI | GAATGC | 1 cut(s) | 1167 |
| Bso31I | GGTCTC | 4 cut(s) | 1340, 1583, 1592, 2008 |
| BsoBI | CYCGRG | 2 cut(s) | 22, 2034 |
| Bsp120I | GGGCCC | 1 cut(s) | 1356 |
| Bsp1286I | GDGCHC | 5 cut(s) | 435, 973, 1360, 1927, 2066 |
| Bsp13I | TCCGGA | 1 cut(s) | 1021 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1480 |
| Bsp19I | CCATGG | 1 cut(s) | 171 |
| BspEI | TCCGGA | 1 cut(s) | 1021 |
| BspFNI | CGCG | 3 cut(s) | 856, 1343, 1892 |
| BspMI | ACCTGC | 2 cut(s) | 417, 649 |
| BspOI | GCTAGC | 2 cut(s) | 9, 270 |
| BspPI | GGATC | 5 cut(s) | 1013, 1258, 1266, 1279, 1761 |
| BspT107I | GGYRCC | 5 cut(s) | 639, 685, 1091, 1262, 1629 |
| BspTNI | GGTCTC | 4 cut(s) | 1340, 1583, 1592, 2008 |
| BsrBI | CCGCTC | 5 cut(s) | 1552, 1693, 1705, 2039, 2072 |
| BsrDI | GCAATG | 1 cut(s) | 1224 |
| BsrFI | RCCGGY | 2 cut(s) | 1094, 1207 |
| BsrI | ACTGG | 4 cut(s) | 301, 937, 1035, 1284 |
| BssAI | RCCGGY | 2 cut(s) | 1094, 1207 |
| BssNI | GRCGYC | 5 cut(s) | 640, 686, 1263, 1529, 1850 |
| BssSI | CACGAG | 2 cut(s) | 434, 966 |
| BssT1I | CCWWGG | 6 cut(s) | 158, 171, 725, 973, 1087, 1638 |
| Bst2BI | CACGAG | 2 cut(s) | 434, 966 |
| Bst2UI | CCWGG | 3 cut(s) | 322, 1700, 1856 |
| Bst6I | CTCTTC | 3 cut(s) | 300, 1364, 1820 |
| BstACI | GRCGYC | 5 cut(s) | 640, 686, 1263, 1529, 1850 |
| BstDSI | CCRYGG | 3 cut(s) | 171, 597, 1105 |
| BstEII | GGTNACC | 1 cut(s) | 1405 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1637 |
| BstF5I | GGATG | 4 cut(s) | 119, 764, 1666, 1969 |
| BstFNI | CGCG | 3 cut(s) | 856, 1343, 1892 |
| BstH2I | RGCGCY | 5 cut(s) | 557, 643, 689, 1037, 1266 |
| BstHHI | GCGC | 7 cut(s) | 556, 642, 688, 843, 1036, 1265, 1449 |
| BstMAI | GTCTC | 7 cut(s) | 1019, 1340, 1583, 1592, 1723, 2008, 2123 |
| BstMCI | CGRYCG | 1 cut(s) | 1455 |
| BstNI | CCWGG | 3 cut(s) | 322, 1700, 1856 |
| BstNSI | RCATGY | 2 cut(s) | 425, 538 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 921 |
| BstPI | GGTNACC | 1 cut(s) | 1405 |
| BstSCI | CCNGG | 4 cut(s) | 320, 1542, 1698, 1854 |
| BstSFI | CTRYAG | 1 cut(s) | 1143 |
| BstSLI | GKGCMC | 2 cut(s) | 435, 1360 |
| BstUI | CGCG | 3 cut(s) | 856, 1343, 1892 |
| BstV1I | GCAGC | 6 cut(s) | 364, 857, 1084, 1099, 1494, 1642 |
| BstX2I | RGATCY | 2 cut(s) | 1271, 1785 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1282, 1862 |
| BstYI | RGATCY | 2 cut(s) | 1271, 1785 |
| BtgI | CCRYGG | 3 cut(s) | 171, 597, 1105 |
| BtgZI | GCGATG | 1 cut(s) | 42 |
| BtrI | CACGTC | 1 cut(s) | 1717 |
| BtsCI | GGATG | 4 cut(s) | 119, 764, 1666, 1969 |
| BtsI | GCAGTG | 1 cut(s) | 658 |
| BtsIMutI | CAGTG | 5 cut(s) | 658, 930, 1028, 1277, 1815 |
| BveI | ACCTGC | 2 cut(s) | 417, 649 |
| CfoI | GCGC | 7 cut(s) | 556, 642, 688, 843, 1036, 1265, 1449 |
| Cfr10I | RCCGGY | 2 cut(s) | 1094, 1207 |
| CseI | GACGC | 5 cut(s) | 80, 1349, 1839, 1868, 1943 |
| Csp6I | GTAC | 2 cut(s) | 982, 2046 |
| CviAII | CATG | 5 cut(s) | 61, 172, 422, 535, 718 |
| CviQI | GTAC | 2 cut(s) | 982, 2046 |
| DinI | GGCGCC | 3 cut(s) | 641, 687, 1264 |
| DraI | TTTAAA | 1 cut(s) | 1005 |
| DraIII | CACNNNGTG | 2 cut(s) | 936, 1516 |
| EaeI | YGGCCR | 4 cut(s) | 948, 1303, 1677, 2022 |
| Eam1104I | CTCTTC | 3 cut(s) | 300, 1364, 1820 |
| EarI | CTCTTC | 3 cut(s) | 300, 1364, 1820 |
| EciI | GGCGGA | 5 cut(s) | 80, 375, 437, 617, 1377 |
| Eco130I | CCWWGG | 6 cut(s) | 158, 171, 725, 973, 1087, 1638 |
| Eco24I | GRGCYC | 3 cut(s) | 973, 1360, 2066 |
| Eco31I | GGTCTC | 4 cut(s) | 1340, 1583, 1592, 2008 |
| Eco32I | GATATC | 1 cut(s) | 19 |
| Eco47I | GGWCC | 6 cut(s) | 590, 735, 1102, 1696, 1977, 2079 |
| Eco57I | CTGAAG | 3 cut(s) | 1274, 1769, 1938 |
| Eco88I | CYCGRG | 2 cut(s) | 22, 2034 |
| Eco91I | GGTNACC | 1 cut(s) | 1405 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1637 |
| EcoO109I | RGGNCCY | 5 cut(s) | 735, 1129, 1356, 1696, 2079 |
| EcoO65I | GGTNACC | 1 cut(s) | 1405 |
| EcoRI | GAATTC | 1 cut(s) | 882 |
| EcoRII | CCWGG | 3 cut(s) | 320, 1698, 1854 |
| EcoRV | GATATC | 1 cut(s) | 19 |
| EcoT14I | CCWWGG | 6 cut(s) | 158, 171, 725, 973, 1087, 1638 |
| EcoT38I | GRGCYC | 3 cut(s) | 973, 1360, 2066 |
| EgeI | GGCGCC | 3 cut(s) | 641, 687, 1264 |
| EheI | GGCGCC | 3 cut(s) | 641, 687, 1264 |
| ErhI | CCWWGG | 6 cut(s) | 158, 171, 725, 973, 1087, 1638 |
| Esp3I | CGTCTC | 1 cut(s) | 1723 |
| FaeI | CATG | 5 cut(s) | 64, 175, 425, 538, 721 |
| FaqI | GGGAC | 4 cut(s) | 748, 1349, 1709, 1837 |
| FatI | CATG | 5 cut(s) | 60, 171, 421, 534, 717 |
| FbaI | TGATCA | 2 cut(s) | 1462, 1711 |
| FblI | GTMKAC | 1 cut(s) | 925 |
| FokI | GGATG | 4 cut(s) | 106, 771, 1673, 1976 |
| FriOI | GRGCYC | 3 cut(s) | 973, 1360, 2066 |
| FspBI | CTAG | 8 cut(s) | 6, 131, 201, 267, 974, 1433, 1523, 1727 |
| GlaI | GCGC | 7 cut(s) | 555, 641, 687, 842, 1035, 1264, 1448 |
| GsaI | CCCAGC | 3 cut(s) | 1233, 1595, 1866 |
| GsuI | CTGGAG | 5 cut(s) | 467, 1141, 1256, 1721, 1853 |
| HaeII | RGCGCY | 5 cut(s) | 557, 643, 689, 1037, 1266 |
| HapII | CCGG | 7 cut(s) | 756, 1022, 1095, 1208, 1543, 1958, 2120 |
| HgaI | GACGC | 5 cut(s) | 80, 1349, 1839, 1868, 1943 |
| HhaI | GCGC | 7 cut(s) | 556, 642, 688, 843, 1036, 1265, 1449 |
| Hin1I | GRCGYC | 5 cut(s) | 640, 686, 1263, 1529, 1850 |
| Hin1II | CATG | 5 cut(s) | 64, 175, 425, 538, 721 |
| Hin6I | GCGC | 7 cut(s) | 554, 640, 686, 841, 1034, 1263, 1447 |
| HinP1I | GCGC | 7 cut(s) | 554, 640, 686, 841, 1034, 1263, 1447 |
| HincII | GTYRAC | 3 cut(s) | 349, 385, 963 |
| HindII | GTYRAC | 3 cut(s) | 349, 385, 963 |
| HpaII | CCGG | 7 cut(s) | 756, 1022, 1095, 1208, 1543, 1958, 2120 |
| HphI | GGTGA | 8 cut(s) | 262, 298, 673, 714, 1076, 1399, 1461, 1834 |
| Hpy166II | GTNNAC | 7 cut(s) | 349, 385, 433, 664, 926, 963, 1102 |
| Hpy188I | TCNGA | 9 cut(s) | 40, 46, 580, 830, 1048, 1293, 1999, 2088, 2104 |
| Hpy188III | TCNNGA | 6 cut(s) | 22, 191, 484, 700, 1022, 1433 |
| Hpy8I | GTNNAC | 7 cut(s) | 349, 385, 433, 664, 926, 963, 1102 |
| Hpy99I | CGWCG | 7 cut(s) | 14, 678, 1016, 1343, 1531, 1534, 1685 |
| HpyAV | CCTTC | 8 cut(s) | 703, 995, 1183, 1240, 1744, 1771, 1888, 1913 |
| HpyCH4IV | ACGT | 2 cut(s) | 1529, 1716 |
| HpyCH4V | TGCA | 5 cut(s) | 228, 433, 651, 1072, 1510 |
| HpySE526I | ACGT | 2 cut(s) | 1529, 1716 |
| Hsp92I | GRCGYC | 5 cut(s) | 640, 686, 1263, 1529, 1850 |
| Hsp92II | CATG | 5 cut(s) | 64, 175, 425, 538, 721 |
| HspAI | GCGC | 7 cut(s) | 554, 640, 686, 841, 1034, 1263, 1447 |
| KasI | GGCGCC | 3 cut(s) | 639, 685, 1262 |
| Kpn2I | TCCGGA | 1 cut(s) | 1021 |
| KroI | GCCGGC | 2 cut(s) | 1094, 1207 |
| KroNI | GCCGGC | 2 cut(s) | 1096, 1209 |
| Ksp22I | TGATCA | 2 cut(s) | 1462, 1711 |
| LmnI | GCTCC | 8 cut(s) | 278, 790, 940, 1057, 1237, 1390, 1588, 1702 |
| Lsp1109I | GCAGC | 6 cut(s) | 364, 857, 1084, 1099, 1494, 1642 |
| LweI | GCATC | 5 cut(s) | 205, 1059, 1501, 1642, 1651 |
| MaeI | CTAG | 8 cut(s) | 6, 131, 201, 267, 974, 1433, 1523, 1727 |
| MaeII | ACGT | 2 cut(s) | 1529, 1716 |
| MaeIII | GTNAC | 4 cut(s) | 457, 720, 1135, 1405 |
| MbiI | CCGCTC | 5 cut(s) | 1552, 1693, 1705, 2039, 2072 |
| MboII | GAAGA | 6 cut(s) | 224, 317, 436, 872, 1381, 1837 |
| MflI | RGATCY | 2 cut(s) | 1271, 1785 |
| MhlI | GDGCHC | 5 cut(s) | 435, 973, 1360, 1927, 2066 |
| MlsI | TGGCCA | 1 cut(s) | 1305 |
| MluCI | AATT | 7 cut(s) | 500, 522, 623, 692, 703, 815, 882 |
| MluI | ACGCGT | 1 cut(s) | 854 |
| MluNI | TGGCCA | 1 cut(s) | 1305 |
| Mly113I | GGCGCC | 3 cut(s) | 640, 686, 1263 |
| MlyI | GAGTC | 9 cut(s) | 50, 59, 77, 323, 679, 1048, 1307, 1808, 1961 |
| MmeI | TCCRAC | 3 cut(s) | 603, 617, 844 |
| Mox20I | TGGCCA | 1 cut(s) | 1305 |
| MroI | TCCGGA | 1 cut(s) | 1021 |
| MroNI | GCCGGC | 2 cut(s) | 1094, 1207 |
| MscI | TGGCCA | 1 cut(s) | 1305 |
| MseI | TTAA | 3 cut(s) | 626, 1004, 1623 |
| MslI | CAYNNNNRTG | 4 cut(s) | 618, 1089, 1280, 1820 |
| Msp20I | TGGCCA | 1 cut(s) | 1305 |
| MspA1I | CMGCKG | 7 cut(s) | 278, 416, 991, 1268, 1795, 1975, 2138 |
| MspI | CCGG | 7 cut(s) | 756, 1022, 1095, 1208, 1543, 1958, 2120 |
| MspR9I | CCNGG | 4 cut(s) | 322, 1544, 1700, 1856 |
| Mva1269I | GAATGC | 1 cut(s) | 1167 |
| MvaI | CCWGG | 3 cut(s) | 322, 1700, 1856 |
| MvnI | CGCG | 3 cut(s) | 856, 1343, 1892 |
| NaeI | GCCGGC | 2 cut(s) | 1096, 1209 |
| NarI | GGCGCC | 3 cut(s) | 640, 686, 1263 |
| NciI | CCSGG | 1 cut(s) | 1544 |
| NcoI | CCATGG | 1 cut(s) | 171 |
| NgoMIV | GCCGGC | 2 cut(s) | 1094, 1207 |
| NheI | GCTAGC | 2 cut(s) | 5, 266 |
| NlaIII | CATG | 5 cut(s) | 64, 175, 425, 538, 721 |
| NmeAIII | GCCGAG | 1 cut(s) | 2085 |
| NmuCI | GTSAC | 3 cut(s) | 457, 720, 1405 |
| NspI | RCATGY | 2 cut(s) | 425, 538 |
| OliI | CACNNNNGTG | 3 cut(s) | 1089, 1280, 1820 |
| PaeI | GCATGC | 1 cut(s) | 425 |
| PaeR7I | CTCGAG | 1 cut(s) | 22 |
| PaqCI | CACCTGC | 2 cut(s) | 417, 649 |
| PciI | ACATGT | 1 cut(s) | 534 |
| PctI | GAATGC | 1 cut(s) | 1167 |
| PdiI | GCCGGC | 2 cut(s) | 1096, 1209 |
| PfeI | GAWTC | 2 cut(s) | 35, 713 |
| PflFI | GACNNNGTC | 1 cut(s) | 808 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 490 |
| PleI | GAGTC | 9 cut(s) | 49, 58, 77, 322, 678, 1047, 1307, 1807, 1961 |
| PluTI | GGCGCC | 3 cut(s) | 643, 689, 1266 |
| PpsI | GAGTC | 9 cut(s) | 49, 58, 77, 322, 678, 1047, 1307, 1807, 1961 |
| PpuMI | RGGWCCY | 3 cut(s) | 735, 1696, 2079 |
| PscI | ACATGT | 1 cut(s) | 534 |
| PshAI | GACNNNNGTC | 1 cut(s) | 921 |
| PshBI | ATTAAT | 1 cut(s) | 626 |
| Psp5II | RGGWCCY | 3 cut(s) | 735, 1696, 2079 |
| Psp6I | CCWGG | 3 cut(s) | 320, 1698, 1854 |
| PspEI | GGTNACC | 1 cut(s) | 1405 |
| PspFI | CCCAGC | 3 cut(s) | 1229, 1591, 1862 |
| PspGI | CCWGG | 3 cut(s) | 320, 1698, 1854 |
| PspOMI | GGGCCC | 1 cut(s) | 1356 |
| PspPPI | RGGWCCY | 3 cut(s) | 735, 1696, 2079 |
| PsuI | RGATCY | 2 cut(s) | 1271, 1785 |
| PsyI | GACNNNGTC | 1 cut(s) | 808 |
| RsaI | GTAC | 2 cut(s) | 983, 2047 |
| RsaNI | GTAC | 2 cut(s) | 982, 2046 |
| RseI | CAYNNNNRTG | 4 cut(s) | 618, 1089, 1280, 1820 |
| SaqAI | TTAA | 3 cut(s) | 626, 1004, 1623 |
| SchI | GAGTC | 9 cut(s) | 50, 59, 77, 323, 679, 1048, 1307, 1808, 1961 |
| ScrFI | CCNGG | 4 cut(s) | 322, 1544, 1700, 1856 |
| SduI | GDGCHC | 5 cut(s) | 435, 973, 1360, 1927, 2066 |
| SfaNI | GCATC | 5 cut(s) | 205, 1059, 1501, 1642, 1651 |
| SfcI | CTRYAG | 1 cut(s) | 1143 |
| SfoI | GGCGCC | 3 cut(s) | 641, 687, 1264 |
| Sfr274I | CTCGAG | 1 cut(s) | 22 |
| SinI | GGWCC | 6 cut(s) | 590, 735, 1102, 1696, 1977, 2079 |
| SlaI | CTCGAG | 1 cut(s) | 22 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 618, 1089, 1280, 1820 |
| SmlI | CTYRAG | 2 cut(s) | 22, 1930 |
| SmoI | CTYRAG | 2 cut(s) | 22, 1930 |
| SphI | GCATGC | 1 cut(s) | 425 |
| Sse9I | AATT | 7 cut(s) | 500, 522, 623, 692, 703, 815, 882 |
| SspDI | GGCGCC | 3 cut(s) | 639, 685, 1262 |
| SspMI | CTAG | 8 cut(s) | 6, 131, 201, 267, 974, 1433, 1523, 1727 |
| StyD4I | CCNGG | 4 cut(s) | 320, 1542, 1698, 1854 |
| StyI | CCWWGG | 6 cut(s) | 158, 171, 725, 973, 1087, 1638 |
| TaiI | ACGT | 2 cut(s) | 1532, 1719 |
| TaqI | TCGA | 8 cut(s) | 23, 699, 779, 812, 886, 1253, 1451, 1532 |
| TasI | AATT | 7 cut(s) | 500, 522, 623, 692, 703, 815, 882 |
| TfiI | GAWTC | 2 cut(s) | 35, 713 |
| Tru1I | TTAA | 3 cut(s) | 626, 1004, 1623 |
| Tru9I | TTAA | 3 cut(s) | 626, 1004, 1623 |
| TscAI | CASTG | 5 cut(s) | 658, 937, 1035, 1284, 1822 |
| TseFI | GTSAC | 3 cut(s) | 457, 720, 1405 |
| TseI | GCWGC | 6 cut(s) | 377, 870, 1072, 1112, 1507, 1655 |
| Tsp45I | GTSAC | 3 cut(s) | 457, 720, 1405 |
| TspDTI | ATGAA | 1 cut(s) | 636 |
| TspGWI | ACGGA | 1 cut(s) | 418 |
| TspRI | CASTG | 5 cut(s) | 658, 937, 1035, 1284, 1822 |
| Tth111I | GACNNNGTC | 1 cut(s) | 808 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 490 |
| VneI | GTGCAC | 1 cut(s) | 431 |
| VpaK11BI | GGWCC | 6 cut(s) | 590, 735, 1102, 1696, 1977, 2079 |
| VspI | ATTAAT | 1 cut(s) | 626 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1637 |
| XapI | RAATTY | 5 cut(s) | 500, 522, 703, 815, 882 |
| XbaI | TCTAGA | 1 cut(s) | 1432 |
| XceI | RCATGY | 2 cut(s) | 425, 538 |
| XcmI | CCANNNNNNNNNTGG | 5 cut(s) | 650, 1085, 1231, 1399, 1609 |
| XhoI | CTCGAG | 1 cut(s) | 22 |
| XmaJI | CCTAGG | 1 cut(s) | 973 |
| XmiI | GTMKAC | 1 cut(s) | 925 |
| XspI | CTAG | 8 cut(s) | 6, 131, 201, 267, 974, 1433, 1523, 1727 |
| ZraI | GACGTC | 1 cut(s) | 1530 |