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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1249 |
| Acc36I | ACCTGC | 1 cut(s) | 1193 |
| Acc65I | GGTACC | 1 cut(s) | 1328 |
| AccB1I | GGYRCC | 3 cut(s) | 451, 1112, 1328 |
| AccBSI | CCGCTC | 5 cut(s) | 202, 514, 541, 754, 883 |
| AccII | CGCG | 6 cut(s) | 574, 795, 843, 893, 1004, 1357 |
| AclWI | GGATC | 1 cut(s) | 171 |
| AcoI | YGGCCR | 4 cut(s) | 153, 810, 942, 1319 |
| AcuI | CTGAAG | 2 cut(s) | 586, 1008 |
| AcvI | CACGTG | 1 cut(s) | 1292 |
| AcyI | GRCGYC | 5 cut(s) | 452, 656, 789, 1113, 1133 |
| AfaI | GTAC | 4 cut(s) | 997, 1149, 1207, 1330 |
| AfeI | AGCGCT | 1 cut(s) | 178 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 31, 70, 306, 819, 936, 1202, 1247, 1282 |
| AflIII | ACRYGT | 2 cut(s) | 841, 1095 |
| AgsI | TTSAA | 6 cut(s) | 242, 1019, 1027, 1102, 1403, 1418 |
| AjnI | CCWGG | 1 cut(s) | 1302 |
| AleI | CACNNNNGTG | 1 cut(s) | 219 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 503, 535 |
| AluBI | AGCT | 7 cut(s) | 344, 469, 606, 685, 802, 986, 1199 |
| AluI | AGCT | 7 cut(s) | 344, 469, 606, 685, 802, 986, 1199 |
| Alw21I | GWGCWC | 2 cut(s) | 229, 687 |
| Alw26I | GTCTC | 7 cut(s) | 41, 108, 354, 710, 850, 1169, 1331 |
| AlwI | GGATC | 1 cut(s) | 171 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1276 |
| Ama87I | CYCGRG | 3 cut(s) | 44, 1080, 1213 |
| Aor51HI | AGCGCT | 1 cut(s) | 178 |
| ApaI | GGGCCC | 2 cut(s) | 394, 1081 |
| ApeKI | GCWGC | 6 cut(s) | 179, 341, 664, 919, 1199, 1218 |
| Asp718I | GGTACC | 1 cut(s) | 1328 |
| AspLEI | GCGC | 9 cut(s) | 58, 179, 322, 336, 454, 576, 1115, 1312, 1357 |
| AsuC2I | CCSGG | 3 cut(s) | 338, 1081, 1082 |
| AsuHPI | GGTGA | 6 cut(s) | 49, 94, 125, 588, 788, 977 |
| AsuII | TTCGAA | 1 cut(s) | 425 |
| AvaI | CYCGRG | 3 cut(s) | 44, 1080, 1213 |
| AvaII | GGWCC | 3 cut(s) | 144, 297, 1251 |
| BaeGI | GKGCMC | 2 cut(s) | 394, 1081 |
| BanI | GGYRCC | 3 cut(s) | 451, 1112, 1328 |
| BanII | GRGCYC | 3 cut(s) | 394, 687, 1081 |
| BbrPI | CACGTG | 1 cut(s) | 1292 |
| BbsI | GAAGAC | 2 cut(s) | 434, 1055 |
| Bbv12I | GWGCWC | 2 cut(s) | 229, 687 |
| BbvI | GCAGC | 6 cut(s) | 166, 353, 676, 931, 1186, 1230 |
| BccI | CCATC | 5 cut(s) | 113, 537, 821, 934, 1319 |
| BceAI | ACGGC | 4 cut(s) | 168, 381, 443, 597 |
| BciT130I | CCWGG | 1 cut(s) | 1304 |
| BcnI | CCSGG | 3 cut(s) | 338, 1081, 1082 |
| BcoDI | GTCTC | 7 cut(s) | 41, 108, 354, 710, 850, 1169, 1331 |
| BfaI | CTAG | 2 cut(s) | 323, 470 |
| BfmI | CTRYAG | 3 cut(s) | 129, 875, 1200 |
| BfoI | RGCGCY | 6 cut(s) | 59, 180, 323, 337, 455, 1116 |
| BfuAI | ACCTGC | 1 cut(s) | 1193 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 416 |
| BlpI | GCTNAGC | 1 cut(s) | 59 |
| Bme1390I | CCNGG | 4 cut(s) | 338, 1081, 1082, 1304 |
| Bme18I | GGWCC | 3 cut(s) | 144, 297, 1251 |
| BmeT110I | CYCGRG | 3 cut(s) | 44, 1080, 1213 |
| BmrFI | CCNGG | 4 cut(s) | 338, 1081, 1082, 1304 |
| BmsI | GCATC | 3 cut(s) | 75, 81, 195 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1181 |
| BpiI | GAAGAC | 2 cut(s) | 434, 1055 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 458, 490 |
| BpmI | CTGGAG | 2 cut(s) | 692, 1325 |
| Bpu10I | CCTNAGC | 1 cut(s) | 686 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 59 |
| Bpu14I | TTCGAA | 1 cut(s) | 425 |
| BpuMI | CCSGG | 3 cut(s) | 338, 1081, 1082 |
| Bsa29I | ATCGAT | 1 cut(s) | 1382 |
| BsaAI | YACGTR | 1 cut(s) | 1292 |
| BsaHI | GRCGYC | 5 cut(s) | 452, 656, 789, 1113, 1133 |
| BsaI | GGTCTC | 2 cut(s) | 710, 1331 |
| BsaJI | CCNNGG | 4 cut(s) | 9, 668, 793, 1080 |
| BsaWI | WCCGGW | 1 cut(s) | 76 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 360, 390, 503, 533 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 31, 70, 306, 819, 936, 1202, 1247, 1282 |
| Bse118I | RCCGGY | 3 cut(s) | 155, 244, 1153 |
| Bse1I | ACTGG | 4 cut(s) | 64, 100, 281, 744 |
| BseBI | CCWGG | 1 cut(s) | 1304 |
| BseCI | ATCGAT | 1 cut(s) | 1382 |
| BseDI | CCNNGG | 4 cut(s) | 9, 668, 793, 1080 |
| BseGI | GGATG | 5 cut(s) | 124, 210, 945, 1237, 1330 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 31, 70, 306, 819, 936, 1202, 1247, 1282 |
| BseMII | CTCAG | 6 cut(s) | 50, 60, 336, 700, 971, 1149 |
| BseNI | ACTGG | 4 cut(s) | 64, 100, 281, 744 |
| BseSI | GKGCMC | 2 cut(s) | 394, 1081 |
| BseX3I | CGGCCG | 2 cut(s) | 153, 1319 |
| BseXI | GCAGC | 6 cut(s) | 166, 353, 676, 931, 1186, 1230 |
| BseYI | CCCAGC | 9 cut(s) | 24, 185, 305, 544, 958, 1073, 1195, 1254, 1266 |
| BsgI | GTGCAG | 2 cut(s) | 155, 938 |
| Bsh1236I | CGCG | 6 cut(s) | 574, 795, 843, 893, 1004, 1357 |
| Bsh1285I | CGRYCG | 2 cut(s) | 156, 1322 |
| BshNI | GGYRCC | 3 cut(s) | 451, 1112, 1328 |
| BshVI | ATCGAT | 1 cut(s) | 1382 |
| BsiEI | CGRYCG | 2 cut(s) | 156, 1322 |
| BsiHKAI | GWGCWC | 2 cut(s) | 229, 687 |
| BsiHKCI | CYCGRG | 3 cut(s) | 44, 1080, 1213 |
| BsiSI | CCGG | 8 cut(s) | 77, 156, 245, 337, 1081, 1154, 1296, 1322 |
| BslFI | GGGAC | 4 cut(s) | 157, 836, 1151, 1237 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 31, 70, 306, 819, 936, 1202, 1247, 1282 |
| BsmAI | GTCTC | 7 cut(s) | 41, 108, 354, 710, 850, 1169, 1331 |
| BsmBI | CGTCTC | 2 cut(s) | 41, 850 |
| BsmFI | GGGAC | 4 cut(s) | 157, 836, 1151, 1237 |
| Bso31I | GGTCTC | 2 cut(s) | 710, 1331 |
| BsoBI | CYCGRG | 3 cut(s) | 44, 1080, 1213 |
| Bsp119I | TTCGAA | 1 cut(s) | 425 |
| Bsp120I | GGGCCC | 2 cut(s) | 390, 1077 |
| Bsp1286I | GDGCHC | 4 cut(s) | 229, 394, 687, 1081 |
| Bsp143I | GATC | 3 cut(s) | 163, 864, 1379 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 59 |
| BspCNI | CTCAG | 6 cut(s) | 51, 61, 337, 699, 972, 1150 |
| BspDI | ATCGAT | 1 cut(s) | 1382 |
| BspFNI | CGCG | 6 cut(s) | 574, 795, 843, 893, 1004, 1357 |
| BspMAI | CTGCAG | 1 cut(s) | 1204 |
| BspMI | ACCTGC | 1 cut(s) | 1193 |
| BspPI | GGATC | 1 cut(s) | 171 |
| BspT104I | TTCGAA | 1 cut(s) | 425 |
| BspT107I | GGYRCC | 3 cut(s) | 451, 1112, 1328 |
| BspTNI | GGTCTC | 2 cut(s) | 710, 1331 |
| BsrBI | CCGCTC | 5 cut(s) | 202, 514, 541, 754, 883 |
| BsrFI | RCCGGY | 3 cut(s) | 155, 244, 1153 |
| BsrI | ACTGG | 4 cut(s) | 64, 100, 281, 744 |
| BssAI | RCCGGY | 3 cut(s) | 155, 244, 1153 |
| BssECI | CCNNGG | 4 cut(s) | 9, 668, 793, 1080 |
| BssMI | GATC | 3 cut(s) | 163, 864, 1379 |
| BssNI | GRCGYC | 5 cut(s) | 452, 656, 789, 1113, 1133 |
| Bst2UI | CCWGG | 1 cut(s) | 1304 |
| Bst4CI | ACNGT | 3 cut(s) | 34, 133, 495 |
| Bst6I | CTCTTC | 2 cut(s) | 357, 530 |
| BstACI | GRCGYC | 5 cut(s) | 452, 656, 789, 1113, 1133 |
| BstBAI | YACGTR | 1 cut(s) | 1292 |
| BstBI | TTCGAA | 1 cut(s) | 425 |
| BstDEI | CTNAG | 6 cut(s) | 59, 69, 345, 686, 980, 1158 |
| BstDSI | CCRYGG | 2 cut(s) | 668, 793 |
| BstEII | GGTNACC | 1 cut(s) | 970 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 934, 1280 |
| BstF5I | GGATG | 5 cut(s) | 124, 210, 945, 1237, 1330 |
| BstFNI | CGCG | 6 cut(s) | 574, 795, 843, 893, 1004, 1357 |
| BstH2I | RGCGCY | 6 cut(s) | 59, 180, 323, 337, 455, 1116 |
| BstHHI | GCGC | 9 cut(s) | 58, 179, 322, 336, 454, 576, 1115, 1312, 1357 |
| BstKTI | GATC | 3 cut(s) | 166, 867, 1382 |
| BstMAI | GTCTC | 7 cut(s) | 41, 108, 354, 710, 850, 1169, 1331 |
| BstMBI | GATC | 3 cut(s) | 163, 864, 1379 |
| BstMCI | CGRYCG | 2 cut(s) | 156, 1322 |
| BstNI | CCWGG | 1 cut(s) | 1304 |
| BstNSI | RCATGY | 1 cut(s) | 1099 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1181 |
| BstPI | GGTNACC | 1 cut(s) | 970 |
| BstSCI | CCNGG | 4 cut(s) | 336, 1079, 1080, 1302 |
| BstSFI | CTRYAG | 3 cut(s) | 129, 875, 1200 |
| BstSLI | GKGCMC | 2 cut(s) | 394, 1081 |
| BstUI | CGCG | 6 cut(s) | 574, 795, 843, 893, 1004, 1357 |
| BstV1I | GCAGC | 6 cut(s) | 166, 353, 676, 931, 1186, 1230 |
| BstV2I | GAAGAC | 2 cut(s) | 434, 1055 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 221 |
| BstZI | CGGCCG | 2 cut(s) | 153, 1319 |
| Bsu15I | ATCGAT | 1 cut(s) | 1382 |
| BsuTUI | ATCGAT | 1 cut(s) | 1382 |
| BtgI | CCRYGG | 2 cut(s) | 668, 793 |
| BtsCI | GGATG | 5 cut(s) | 124, 210, 945, 1237, 1330 |
| BtsI | GCAGTG | 1 cut(s) | 869 |
| BtsIMutI | CAGTG | 5 cut(s) | 138, 288, 469, 869, 1052 |
| BveI | ACCTGC | 1 cut(s) | 1193 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1276 |
| CfoI | GCGC | 9 cut(s) | 58, 179, 322, 336, 454, 576, 1115, 1312, 1357 |
| Cfr10I | RCCGGY | 3 cut(s) | 155, 244, 1153 |
| Cfr42I | CCGCGG | 1 cut(s) | 796 |
| Cfr9I | CCCGGG | 1 cut(s) | 1080 |
| ClaI | ATCGAT | 1 cut(s) | 1382 |
| CseI | GACGC | 5 cut(s) | 645, 797, 832, 993, 1122 |
| Csp6I | GTAC | 4 cut(s) | 996, 1148, 1206, 1329 |
| CviAII | CATG | 2 cut(s) | 638, 1096 |
| CviQI | GTAC | 4 cut(s) | 996, 1148, 1206, 1329 |
| DdeI | CTNAG | 6 cut(s) | 59, 69, 345, 686, 980, 1158 |
| DinI | GGCGCC | 2 cut(s) | 453, 1114 |
| DpnI | GATC | 3 cut(s) | 165, 866, 1381 |
| DpnII | GATC | 3 cut(s) | 163, 864, 1379 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1249 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1249 |
| EaeI | YGGCCR | 4 cut(s) | 153, 810, 942, 1319 |
| EagI | CGGCCG | 2 cut(s) | 153, 1319 |
| Eam1104I | CTCTTC | 2 cut(s) | 357, 530 |
| EarI | CTCTTC | 2 cut(s) | 357, 530 |
| EciI | GGCGGA | 5 cut(s) | 263, 737, 758, 785, 997 |
| Ecl136II | GAGCTC | 1 cut(s) | 685 |
| EclXI | CGGCCG | 2 cut(s) | 153, 1319 |
| Eco24I | GRGCYC | 3 cut(s) | 394, 687, 1081 |
| Eco31I | GGTCTC | 2 cut(s) | 710, 1331 |
| Eco32I | GATATC | 1 cut(s) | 570 |
| Eco47I | GGWCC | 3 cut(s) | 144, 297, 1251 |
| Eco47III | AGCGCT | 1 cut(s) | 178 |
| Eco52I | CGGCCG | 2 cut(s) | 153, 1319 |
| Eco53kI | GAGCTC | 1 cut(s) | 685 |
| Eco57I | CTGAAG | 2 cut(s) | 586, 1008 |
| Eco72I | CACGTG | 1 cut(s) | 1292 |
| Eco88I | CYCGRG | 3 cut(s) | 44, 1080, 1213 |
| Eco91I | GGTNACC | 1 cut(s) | 970 |
| EcoICRI | GAGCTC | 1 cut(s) | 685 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 934, 1280 |
| EcoO109I | RGGNCCY | 4 cut(s) | 144, 390, 1077, 1251 |
| EcoO65I | GGTNACC | 1 cut(s) | 970 |
| EcoRII | CCWGG | 1 cut(s) | 1302 |
| EcoRV | GATATC | 1 cut(s) | 570 |
| EcoT38I | GRGCYC | 3 cut(s) | 394, 687, 1081 |
| EgeI | GGCGCC | 2 cut(s) | 453, 1114 |
| EheI | GGCGCC | 2 cut(s) | 453, 1114 |
| Esp3I | CGTCTC | 2 cut(s) | 41, 850 |
| FaeI | CATG | 2 cut(s) | 641, 1099 |
| FaqI | GGGAC | 4 cut(s) | 157, 836, 1151, 1237 |
| FatI | CATG | 2 cut(s) | 637, 1095 |
| FokI | GGATG | 5 cut(s) | 131, 217, 952, 1224, 1337 |
| FriOI | GRGCYC | 3 cut(s) | 394, 687, 1081 |
| FspBI | CTAG | 2 cut(s) | 323, 470 |
| GlaI | GCGC | 9 cut(s) | 57, 178, 321, 335, 453, 575, 1114, 1311, 1356 |
| GsaI | CCCAGC | 9 cut(s) | 28, 189, 309, 548, 962, 1077, 1199, 1258, 1270 |
| GsuI | CTGGAG | 2 cut(s) | 692, 1325 |
| HaeII | RGCGCY | 6 cut(s) | 59, 180, 323, 337, 455, 1116 |
| HapII | CCGG | 8 cut(s) | 77, 156, 245, 337, 1081, 1154, 1296, 1322 |
| HgaI | GACGC | 5 cut(s) | 645, 797, 832, 993, 1122 |
| HhaI | GCGC | 9 cut(s) | 58, 179, 322, 336, 454, 576, 1115, 1312, 1357 |
| Hin1I | GRCGYC | 5 cut(s) | 452, 656, 789, 1113, 1133 |
| Hin1II | CATG | 2 cut(s) | 641, 1099 |
| Hin6I | GCGC | 9 cut(s) | 56, 177, 320, 334, 452, 574, 1113, 1310, 1355 |
| HinP1I | GCGC | 9 cut(s) | 56, 177, 320, 334, 452, 574, 1113, 1310, 1355 |
| HindIII | AAGCTT | 1 cut(s) | 800 |
| HinfI | GANTC | 5 cut(s) | 347, 473, 926, 1261, 1299 |
| HpaII | CCGG | 8 cut(s) | 77, 156, 245, 337, 1081, 1154, 1296, 1322 |
| HphI | GGTGA | 6 cut(s) | 49, 94, 125, 588, 788, 977 |
| Hpy166II | GTNNAC | 1 cut(s) | 40 |
| Hpy188I | TCNGA | 9 cut(s) | 70, 168, 402, 701, 934, 1242, 1282, 1350, 1366 |
| Hpy188III | TCNNGA | 2 cut(s) | 353, 709 |
| Hpy8I | GTNNAC | 1 cut(s) | 40 |
| Hpy99I | CGWCG | 2 cut(s) | 661, 1246 |
| HpyCH4III | ACNGT | 3 cut(s) | 34, 133, 495 |
| HpyCH4IV | ACGT | 4 cut(s) | 50, 1146, 1291, 1413 |
| HpyCH4V | TGCA | 5 cut(s) | 136, 491, 919, 1127, 1202 |
| HpyF3I | CTNAG | 6 cut(s) | 59, 69, 345, 686, 980, 1158 |
| HpySE526I | ACGT | 4 cut(s) | 50, 1146, 1291, 1413 |
| Hsp92I | GRCGYC | 5 cut(s) | 452, 656, 789, 1113, 1133 |
| Hsp92II | CATG | 2 cut(s) | 641, 1099 |
| HspAI | GCGC | 9 cut(s) | 56, 177, 320, 334, 452, 574, 1113, 1310, 1355 |
| KasI | GGCGCC | 2 cut(s) | 451, 1112 |
| KflI | GGGWCCC | 2 cut(s) | 144, 1251 |
| KpnI | GGTACC | 1 cut(s) | 1332 |
| KroI | GCCGGC | 2 cut(s) | 155, 1153 |
| KroNI | GCCGGC | 2 cut(s) | 157, 1155 |
| KspI | CCGCGG | 1 cut(s) | 796 |
| Kzo9I | GATC | 3 cut(s) | 163, 864, 1379 |
| LmnI | GCTCC | 5 cut(s) | 199, 424, 511, 856, 880 |
| Lsp1109I | GCAGC | 6 cut(s) | 166, 353, 676, 931, 1186, 1230 |
| LweI | GCATC | 3 cut(s) | 75, 81, 195 |
| MaeI | CTAG | 2 cut(s) | 323, 470 |
| MaeII | ACGT | 4 cut(s) | 50, 1146, 1291, 1413 |
| MaeIII | GTNAC | 5 cut(s) | 262, 776, 970, 1134, 1287 |
| MalI | GATC | 3 cut(s) | 165, 866, 1381 |
| MbiI | CCGCTC | 5 cut(s) | 202, 514, 541, 754, 883 |
| MboI | GATC | 3 cut(s) | 163, 864, 1379 |
| MboII | GAAGA | 7 cut(s) | 263, 374, 415, 439, 517, 704, 1060 |
| MfeI | CAATTG | 1 cut(s) | 585 |
| MhlI | GDGCHC | 4 cut(s) | 229, 394, 687, 1081 |
| MluCI | AATT | 1 cut(s) | 585 |
| MluI | ACGCGT | 1 cut(s) | 841 |
| Mly113I | GGCGCC | 2 cut(s) | 452, 1113 |
| MlyI | GAGTC | 4 cut(s) | 356, 467, 935, 1255 |
| MmeI | TCCRAC | 5 cut(s) | 834, 957, 1260, 1265, 1373 |
| MroNI | GCCGGC | 2 cut(s) | 155, 1153 |
| MseI | TTAA | 2 cut(s) | 804, 1044 |
| MslI | CAYNNNNRTG | 2 cut(s) | 111, 219 |
| MspA1I | CMGCKG | 7 cut(s) | 305, 344, 795, 922, 1013, 1199, 1221 |
| MspI | CCGG | 8 cut(s) | 77, 156, 245, 337, 1081, 1154, 1296, 1322 |
| MspR9I | CCNGG | 4 cut(s) | 338, 1081, 1082, 1304 |
| MunI | CAATTG | 1 cut(s) | 585 |
| MvaI | CCWGG | 1 cut(s) | 1304 |
| MvnI | CGCG | 6 cut(s) | 574, 795, 843, 893, 1004, 1357 |
| NaeI | GCCGGC | 2 cut(s) | 157, 1155 |
| NarI | GGCGCC | 2 cut(s) | 452, 1113 |
| NciI | CCSGG | 3 cut(s) | 338, 1081, 1082 |
| NdeII | GATC | 3 cut(s) | 163, 864, 1379 |
| NgoMIV | GCCGGC | 2 cut(s) | 155, 1153 |
| NlaIII | CATG | 2 cut(s) | 641, 1099 |
| NmeAIII | GCCGAG | 4 cut(s) | 34, 508, 587, 1297 |
| NmuCI | GTSAC | 4 cut(s) | 262, 776, 1134, 1287 |
| NspI | RCATGY | 1 cut(s) | 1099 |
| NspV | TTCGAA | 1 cut(s) | 425 |
| OliI | CACNNNNGTG | 1 cut(s) | 219 |
| PciI | ACATGT | 1 cut(s) | 1095 |
| PdiI | GCCGGC | 2 cut(s) | 157, 1155 |
| PfeI | GAWTC | 1 cut(s) | 1299 |
| PflFI | GACNNNGTC | 1 cut(s) | 1276 |
| PfoI | TCCNGGA | 1 cut(s) | 1302 |
| PleI | GAGTC | 4 cut(s) | 355, 467, 934, 1255 |
| PluTI | GGCGCC | 2 cut(s) | 455, 1116 |
| PmaCI | CACGTG | 1 cut(s) | 1292 |
| PmlI | CACGTG | 1 cut(s) | 1292 |
| PpsI | GAGTC | 4 cut(s) | 355, 467, 934, 1255 |
| Ppu21I | YACGTR | 1 cut(s) | 1292 |
| PpuMI | RGGWCCY | 2 cut(s) | 144, 1251 |
| PscI | ACATGT | 1 cut(s) | 1095 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1181 |
| Psp124BI | GAGCTC | 1 cut(s) | 687 |
| Psp5II | RGGWCCY | 2 cut(s) | 144, 1251 |
| Psp6I | CCWGG | 1 cut(s) | 1302 |
| PspCI | CACGTG | 1 cut(s) | 1292 |
| PspEI | GGTNACC | 1 cut(s) | 970 |
| PspFI | CCCAGC | 9 cut(s) | 24, 185, 305, 544, 958, 1073, 1195, 1254, 1266 |
| PspGI | CCWGG | 1 cut(s) | 1302 |
| PspOMI | GGGCCC | 2 cut(s) | 390, 1077 |
| PspPPI | RGGWCCY | 2 cut(s) | 144, 1251 |
| PstI | CTGCAG | 1 cut(s) | 1204 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1276 |
| PsyI | GACNNNGTC | 1 cut(s) | 1276 |
| PvuII | CAGCTG | 2 cut(s) | 344, 1199 |
| RsaI | GTAC | 4 cut(s) | 997, 1149, 1207, 1330 |
| RsaNI | GTAC | 4 cut(s) | 996, 1148, 1206, 1329 |
| RseI | CAYNNNNRTG | 2 cut(s) | 111, 219 |
| SacI | GAGCTC | 1 cut(s) | 687 |
| SacII | CCGCGG | 1 cut(s) | 796 |
| SaqAI | TTAA | 2 cut(s) | 804, 1044 |
| Sau3AI | GATC | 3 cut(s) | 163, 864, 1379 |
| SchI | GAGTC | 4 cut(s) | 356, 467, 935, 1255 |
| ScrFI | CCNGG | 4 cut(s) | 338, 1081, 1082, 1304 |
| SduI | GDGCHC | 4 cut(s) | 229, 394, 687, 1081 |
| SfaNI | GCATC | 3 cut(s) | 75, 81, 195 |
| SfcI | CTRYAG | 3 cut(s) | 129, 875, 1200 |
| SfoI | GGCGCC | 2 cut(s) | 453, 1114 |
| Sfr303I | CCGCGG | 1 cut(s) | 796 |
| SfuI | TTCGAA | 1 cut(s) | 425 |
| SgrBI | CCGCGG | 1 cut(s) | 796 |
| SinI | GGWCC | 3 cut(s) | 144, 297, 1251 |
| SmaI | CCCGGG | 1 cut(s) | 1082 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 111, 219 |
| SrfI | GCCCGGGC | 1 cut(s) | 1082 |
| Sse9I | AATT | 1 cut(s) | 585 |
| SspDI | GGCGCC | 2 cut(s) | 451, 1112 |
| SspMI | CTAG | 2 cut(s) | 323, 470 |
| SstI | GAGCTC | 1 cut(s) | 687 |
| StyD4I | CCNGG | 4 cut(s) | 336, 1079, 1080, 1302 |
| TaaI | ACNGT | 3 cut(s) | 34, 133, 495 |
| TaiI | ACGT | 4 cut(s) | 53, 1149, 1294, 1416 |
| TaqI | TCGA | 4 cut(s) | 293, 425, 659, 1382 |
| TaqII | GACCGA | 1 cut(s) | 1073 |
| TasI | AATT | 1 cut(s) | 585 |
| TfiI | GAWTC | 1 cut(s) | 1299 |
| Tru1I | TTAA | 2 cut(s) | 804, 1044 |
| Tru9I | TTAA | 2 cut(s) | 804, 1044 |
| TscAI | CASTG | 5 cut(s) | 138, 288, 469, 876, 1059 |
| TseFI | GTSAC | 4 cut(s) | 262, 776, 1134, 1287 |
| TseI | GCWGC | 6 cut(s) | 179, 341, 664, 919, 1199, 1218 |
| Tsp45I | GTSAC | 4 cut(s) | 262, 776, 1134, 1287 |
| TspDTI | ATGAA | 1 cut(s) | 852 |
| TspGWI | ACGGA | 2 cut(s) | 685, 1259 |
| TspMI | CCCGGG | 1 cut(s) | 1080 |
| TspRI | CASTG | 5 cut(s) | 138, 288, 469, 876, 1059 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1276 |
| VpaK11BI | GGWCC | 3 cut(s) | 144, 297, 1251 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 934, 1280 |
| XceI | RCATGY | 1 cut(s) | 1099 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 107 |
| XmaI | CCCGGG | 1 cut(s) | 1080 |
| XspI | CTAG | 2 cut(s) | 323, 470 |