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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 119 |
| AccBSI | CCGCTC | 1 cut(s) | 42 |
| AciI | CCGC | 9 cut(s) | 42, 51, 198, 224, 251, 318, 348, 365, 382 |
| AcuI | CTGAAG | 1 cut(s) | 426 |
| AcyI | GRCGYC | 2 cut(s) | 120, 254 |
| AfaI | GTAC | 1 cut(s) | 300 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 320, 527 |
| AgsI | TTSAA | 2 cut(s) | 64, 139 |
| AjnI | CCWGG | 4 cut(s) | 11, 97, 325, 504 |
| AluBI | AGCT | 1 cut(s) | 6 |
| AluI | AGCT | 1 cut(s) | 6 |
| Alw21I | GWGCWC | 2 cut(s) | 272, 341 |
| Alw26I | GTCTC | 2 cut(s) | 261, 530 |
| Ama87I | CYCGRG | 1 cut(s) | 414 |
| AoxI | GGCC | 4 cut(s) | 35, 95, 311, 417 |
| ApeKI | GCWGC | 3 cut(s) | 194, 292, 542 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 68 |
| AspLEI | GCGC | 1 cut(s) | 122 |
| AspS9I | GGNCC | 7 cut(s) | 114, 311, 323, 384, 417, 453, 490 |
| AsuC2I | CCSGG | 4 cut(s) | 74, 163, 415, 416 |
| AvaI | CYCGRG | 1 cut(s) | 414 |
| AvaII | GGWCC | 5 cut(s) | 114, 323, 384, 453, 490 |
| BaeGI | GKGCMC | 1 cut(s) | 396 |
| BanI | GGYRCC | 1 cut(s) | 119 |
| BanII | GRGCYC | 1 cut(s) | 473 |
| BauI | CACGAG | 1 cut(s) | 480 |
| BbsI | GAAGAC | 1 cut(s) | 61 |
| Bbv12I | GWGCWC | 2 cut(s) | 272, 341 |
| BbvCI | CCTCAGC | 2 cut(s) | 153, 378 |
| BbvI | GCAGC | 3 cut(s) | 206, 304, 529 |
| BccI | CCATC | 4 cut(s) | 238, 443, 464, 520 |
| BceAI | ACGGC | 1 cut(s) | 185 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 11, 45, 521, 555 |
| BciT130I | CCWGG | 4 cut(s) | 13, 99, 327, 506 |
| BciVI | GTATCC | 1 cut(s) | 421 |
| BclI | TGATCA | 1 cut(s) | 358 |
| BcnI | CCSGG | 4 cut(s) | 74, 163, 415, 416 |
| BcoDI | GTCTC | 2 cut(s) | 261, 530 |
| BfoI | RGCGCY | 1 cut(s) | 123 |
| BfuI | GTATCC | 1 cut(s) | 421 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 206 |
| BisI | GCNGC | 6 cut(s) | 43, 195, 198, 252, 293, 543 |
| BlsI | GCNGC | 6 cut(s) | 44, 196, 199, 253, 294, 544 |
| Bme1390I | CCNGG | 8 cut(s) | 13, 74, 99, 163, 327, 415, 416, 506 |
| Bme18I | GGWCC | 5 cut(s) | 114, 323, 384, 453, 490 |
| BmeT110I | CYCGRG | 1 cut(s) | 414 |
| BmgT120I | GGNCC | 7 cut(s) | 114, 311, 323, 384, 417, 453, 490 |
| BmiI | GGNNCC | 3 cut(s) | 121, 386, 454 |
| BmrFI | CCNGG | 8 cut(s) | 13, 74, 99, 163, 327, 415, 416, 506 |
| BmsI | GCATC | 1 cut(s) | 423 |
| BpiI | GAAGAC | 1 cut(s) | 61 |
| BpmI | CTGGAG | 1 cut(s) | 34 |
| Bpu10I | CCTNAGC | 2 cut(s) | 153, 378 |
| BpuMI | CCSGG | 4 cut(s) | 74, 163, 415, 416 |
| BsaHI | GRCGYC | 2 cut(s) | 120, 254 |
| BsaJI | CCNNGG | 3 cut(s) | 73, 123, 414 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 239, 269 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 320, 527 |
| Bse118I | RCCGGY | 1 cut(s) | 116 |
| Bse1I | ACTGG | 1 cut(s) | 498 |
| BseBI | CCWGG | 4 cut(s) | 13, 99, 327, 506 |
| BseDI | CCNNGG | 3 cut(s) | 73, 123, 414 |
| BseGI | GGATG | 1 cut(s) | 376 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 320, 527 |
| BseMII | CTCAG | 8 cut(s) | 106, 144, 158, 165, 180, 272, 392, 413 |
| BseNI | ACTGG | 1 cut(s) | 498 |
| BseSI | GKGCMC | 1 cut(s) | 396 |
| BseXI | GCAGC | 3 cut(s) | 206, 304, 529 |
| BsgI | GTGCAG | 1 cut(s) | 311 |
| BshFI | GGCC | 4 cut(s) | 37, 97, 313, 419 |
| BshNI | GGYRCC | 1 cut(s) | 119 |
| BsiHKAI | GWGCWC | 2 cut(s) | 272, 341 |
| BsiHKCI | CYCGRG | 1 cut(s) | 414 |
| BsiSI | CCGG | 4 cut(s) | 73, 117, 163, 415 |
| BslFI | GGGAC | 1 cut(s) | 466 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 320, 527 |
| BsmAI | GTCTC | 2 cut(s) | 261, 530 |
| BsmBI | CGTCTC | 1 cut(s) | 261 |
| BsmFI | GGGAC | 1 cut(s) | 466 |
| BsnI | GGCC | 4 cut(s) | 37, 97, 313, 419 |
| BsoBI | CYCGRG | 1 cut(s) | 414 |
| Bsp1286I | GDGCHC | 4 cut(s) | 272, 341, 396, 473 |
| Bsp143I | GATC | 2 cut(s) | 181, 358 |
| BspACI | CCGC | 9 cut(s) | 42, 51, 198, 224, 251, 318, 348, 365, 382 |
| BspANI | GGCC | 4 cut(s) | 37, 97, 313, 419 |
| BspCNI | CTCAG | 8 cut(s) | 105, 145, 159, 166, 181, 271, 391, 412 |
| BspHI | TCATGA | 1 cut(s) | 459 |
| BspLI | GGNNCC | 3 cut(s) | 121, 386, 454 |
| BspT107I | GGYRCC | 1 cut(s) | 119 |
| BsrBI | CCGCTC | 1 cut(s) | 42 |
| BsrFI | RCCGGY | 1 cut(s) | 116 |
| BsrI | ACTGG | 1 cut(s) | 498 |
| BssAI | RCCGGY | 1 cut(s) | 116 |
| BssECI | CCNNGG | 3 cut(s) | 73, 123, 414 |
| BssMI | GATC | 2 cut(s) | 181, 358 |
| BssNI | GRCGYC | 2 cut(s) | 120, 254 |
| BssSI | CACGAG | 1 cut(s) | 480 |
| BssT1I | CCWWGG | 1 cut(s) | 123 |
| Bst2BI | CACGAG | 1 cut(s) | 480 |
| Bst2UI | CCWGG | 4 cut(s) | 13, 99, 327, 506 |
| Bst6I | CTCTTC | 1 cut(s) | 528 |
| BstACI | GRCGYC | 2 cut(s) | 120, 254 |
| BstC8I | GCNNGC | 1 cut(s) | 237 |
| BstDEI | CTNAG | 8 cut(s) | 92, 153, 167, 174, 189, 258, 378, 399 |
| BstF5I | GGATG | 1 cut(s) | 376 |
| BstH2I | RGCGCY | 1 cut(s) | 123 |
| BstHHI | GCGC | 1 cut(s) | 122 |
| BstKTI | GATC | 2 cut(s) | 184, 361 |
| BstMAI | GTCTC | 2 cut(s) | 261, 530 |
| BstMBI | GATC | 2 cut(s) | 181, 358 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 48, 158, 206, 289, 345 |
| BstNI | CCWGG | 4 cut(s) | 13, 99, 327, 506 |
| BstSCI | CCNGG | 8 cut(s) | 11, 72, 97, 161, 325, 413, 414, 504 |
| BstSLI | GKGCMC | 1 cut(s) | 396 |
| BstV1I | GCAGC | 3 cut(s) | 206, 304, 529 |
| BstV2I | GAAGAC | 1 cut(s) | 61 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 105, 427, 505 |
| BsuI | GTATCC | 1 cut(s) | 421 |
| BsuRI | GGCC | 4 cut(s) | 37, 97, 313, 419 |
| BtgZI | GCGATG | 1 cut(s) | 446 |
| BtsCI | GGATG | 1 cut(s) | 376 |
| BtsI | GCAGTG | 1 cut(s) | 474 |
| BtsIMutI | CAGTG | 2 cut(s) | 186, 474 |
| Cac8I | GCNNGC | 1 cut(s) | 237 |
| CciI | TCATGA | 1 cut(s) | 459 |
| CfoI | GCGC | 1 cut(s) | 122 |
| Cfr10I | RCCGGY | 1 cut(s) | 116 |
| Cfr13I | GGNCC | 7 cut(s) | 114, 311, 323, 384, 417, 453, 490 |
| Cfr9I | CCCGGG | 1 cut(s) | 414 |
| CseI | GACGC | 1 cut(s) | 243 |
| Csp6I | GTAC | 1 cut(s) | 299 |
| CviAII | CATG | 3 cut(s) | 241, 362, 460 |
| CviQI | GTAC | 1 cut(s) | 299 |
| DdeI | CTNAG | 8 cut(s) | 92, 153, 167, 174, 189, 258, 378, 399 |
| DinI | GGCGCC | 1 cut(s) | 121 |
| DpnI | GATC | 2 cut(s) | 183, 360 |
| DpnII | GATC | 2 cut(s) | 181, 358 |
| Eam1104I | CTCTTC | 1 cut(s) | 528 |
| EarI | CTCTTC | 1 cut(s) | 528 |
| Eco130I | CCWWGG | 1 cut(s) | 123 |
| Eco24I | GRGCYC | 1 cut(s) | 473 |
| Eco47I | GGWCC | 5 cut(s) | 114, 323, 384, 453, 490 |
| Eco57I | CTGAAG | 1 cut(s) | 426 |
| Eco88I | CYCGRG | 1 cut(s) | 414 |
| EcoO109I | RGGNCCY | 1 cut(s) | 311 |
| EcoRII | CCWGG | 4 cut(s) | 11, 97, 325, 504 |
| EcoT14I | CCWWGG | 1 cut(s) | 123 |
| EcoT38I | GRGCYC | 1 cut(s) | 473 |
| EgeI | GGCGCC | 1 cut(s) | 121 |
| EheI | GGCGCC | 1 cut(s) | 121 |
| ErhI | CCWWGG | 1 cut(s) | 123 |
| Esp3I | CGTCTC | 1 cut(s) | 261 |
| FaeI | CATG | 3 cut(s) | 244, 365, 463 |
| FaiI | YATR | 3 cut(s) | 242, 363, 461 |
| FaqI | GGGAC | 1 cut(s) | 466 |
| FatI | CATG | 3 cut(s) | 240, 361, 459 |
| FauI | CCCGC | 1 cut(s) | 44 |
| FbaI | TGATCA | 1 cut(s) | 358 |
| Fnu4HI | GCNGC | 6 cut(s) | 43, 195, 198, 252, 293, 543 |
| FokI | GGATG | 1 cut(s) | 383 |
| FriOI | GRGCYC | 1 cut(s) | 473 |
| Fsp4HI | GCNGC | 6 cut(s) | 43, 195, 198, 252, 293, 543 |
| GlaI | GCGC | 1 cut(s) | 121 |
| GluI | GCNGC | 6 cut(s) | 43, 195, 198, 252, 293, 543 |
| GsuI | CTGGAG | 1 cut(s) | 34 |
| HaeII | RGCGCY | 1 cut(s) | 123 |
| HaeIII | GGCC | 4 cut(s) | 37, 97, 313, 419 |
| HapII | CCGG | 4 cut(s) | 73, 117, 163, 415 |
| HgaI | GACGC | 1 cut(s) | 243 |
| HhaI | GCGC | 1 cut(s) | 122 |
| Hin1I | GRCGYC | 2 cut(s) | 120, 254 |
| Hin1II | CATG | 3 cut(s) | 244, 365, 463 |
| Hin6I | GCGC | 1 cut(s) | 120 |
| HinP1I | GCGC | 1 cut(s) | 120 |
| HinfI | GANTC | 1 cut(s) | 277 |
| HpaII | CCGG | 4 cut(s) | 73, 117, 163, 415 |
| Hpy188I | TCNGA | 4 cut(s) | 33, 406, 490, 525 |
| Hpy188III | TCNNGA | 2 cut(s) | 460, 554 |
| HpyAV | CCTTC | 2 cut(s) | 58, 324 |
| HpyCH4V | TGCA | 3 cut(s) | 22, 292, 436 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 48, 158, 206, 289, 345 |
| HpyF3I | CTNAG | 8 cut(s) | 92, 153, 167, 174, 189, 258, 378, 399 |
| Hsp92I | GRCGYC | 2 cut(s) | 120, 254 |
| Hsp92II | CATG | 3 cut(s) | 244, 365, 463 |
| HspAI | GCGC | 1 cut(s) | 120 |
| KasI | GGCGCC | 1 cut(s) | 119 |
| Ksp22I | TGATCA | 1 cut(s) | 358 |
| Kzo9I | GATC | 2 cut(s) | 181, 358 |
| Lsp1109I | GCAGC | 3 cut(s) | 206, 304, 529 |
| LweI | GCATC | 1 cut(s) | 423 |
| MaeIII | GTNAC | 1 cut(s) | 127 |
| MalI | GATC | 2 cut(s) | 183, 360 |
| MbiI | CCGCTC | 1 cut(s) | 42 |
| MboI | GATC | 2 cut(s) | 181, 358 |
| MboII | GAAGA | 2 cut(s) | 61, 545 |
| MhlI | GDGCHC | 4 cut(s) | 272, 341, 396, 473 |
| Mly113I | GGCGCC | 1 cut(s) | 120 |
| MlyI | GAGTC | 1 cut(s) | 286 |
| MmeI | TCCRAC | 2 cut(s) | 11, 126 |
| MroXI | GAANNNNTTC | 1 cut(s) | 68 |
| MseI | TTAA | 1 cut(s) | 213 |
| MspA1I | CMGCKG | 2 cut(s) | 320, 382 |
| MspI | CCGG | 4 cut(s) | 73, 117, 163, 415 |
| MspR9I | CCNGG | 8 cut(s) | 13, 74, 99, 163, 327, 415, 416, 506 |
| MvaI | CCWGG | 4 cut(s) | 13, 99, 327, 506 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 48, 158, 206, 289, 345 |
| NarI | GGCGCC | 1 cut(s) | 120 |
| NciI | CCSGG | 4 cut(s) | 74, 163, 415, 416 |
| NdeII | GATC | 2 cut(s) | 181, 358 |
| NlaIII | CATG | 3 cut(s) | 244, 365, 463 |
| NlaIV | GGNNCC | 3 cut(s) | 121, 386, 454 |
| NmeAIII | GCCGAG | 1 cut(s) | 63 |
| NmuCI | GTSAC | 1 cut(s) | 127 |
| PagI | TCATGA | 1 cut(s) | 459 |
| PdmI | GAANNNNTTC | 1 cut(s) | 68 |
| PfoI | TCCNGGA | 1 cut(s) | 11 |
| PkrI | GCNGC | 6 cut(s) | 44, 196, 199, 253, 294, 544 |
| PleI | GAGTC | 1 cut(s) | 285 |
| PluTI | GGCGCC | 1 cut(s) | 123 |
| PpsI | GAGTC | 1 cut(s) | 285 |
| Psp6I | CCWGG | 4 cut(s) | 11, 97, 325, 504 |
| PspGI | CCWGG | 4 cut(s) | 11, 97, 325, 504 |
| PspN4I | GGNNCC | 3 cut(s) | 121, 386, 454 |
| PspPI | GGNCC | 7 cut(s) | 114, 311, 323, 384, 417, 453, 490 |
| RsaI | GTAC | 1 cut(s) | 300 |
| RsaNI | GTAC | 1 cut(s) | 299 |
| SaqAI | TTAA | 1 cut(s) | 213 |
| SatI | GCNGC | 6 cut(s) | 43, 195, 198, 252, 293, 543 |
| Sau3AI | GATC | 2 cut(s) | 181, 358 |
| Sau96I | GGNCC | 7 cut(s) | 114, 311, 323, 384, 417, 453, 490 |
| SchI | GAGTC | 1 cut(s) | 286 |
| ScrFI | CCNGG | 8 cut(s) | 13, 74, 99, 163, 327, 415, 416, 506 |
| SduI | GDGCHC | 4 cut(s) | 272, 341, 396, 473 |
| SetI | ASST | 7 cut(s) | 8, 20, 69, 129, 159, 289, 331 |
| SfaNI | GCATC | 1 cut(s) | 423 |
| SfoI | GGCGCC | 1 cut(s) | 121 |
| SinI | GGWCC | 5 cut(s) | 114, 323, 384, 453, 490 |
| SmaI | CCCGGG | 1 cut(s) | 416 |
| SsiI | CCGC | 9 cut(s) | 42, 51, 198, 224, 251, 318, 348, 365, 382 |
| SspDI | GGCGCC | 1 cut(s) | 119 |
| StyD4I | CCNGG | 8 cut(s) | 11, 72, 97, 161, 325, 413, 414, 504 |
| StyI | CCWWGG | 1 cut(s) | 123 |
| TaqI | TCGA | 1 cut(s) | 467 |
| TauI | GCSGC | 3 cut(s) | 45, 200, 254 |
| Tru1I | TTAA | 1 cut(s) | 213 |
| Tru9I | TTAA | 1 cut(s) | 213 |
| TscAI | CASTG | 2 cut(s) | 193, 481 |
| TseFI | GTSAC | 1 cut(s) | 127 |
| TseI | GCWGC | 3 cut(s) | 194, 292, 542 |
| Tsp45I | GTSAC | 1 cut(s) | 127 |
| TspGWI | ACGGA | 1 cut(s) | 146 |
| TspMI | CCCGGG | 1 cut(s) | 414 |
| TspRI | CASTG | 2 cut(s) | 193, 481 |
| VpaK11BI | GGWCC | 5 cut(s) | 114, 323, 384, 453, 490 |
| XmaI | CCCGGG | 1 cut(s) | 414 |
| XmnI | GAANNNNTTC | 1 cut(s) | 68 |