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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 21 |
| AccBSI | CCGCTC | 4 cut(s) | 19, 40, 274, 320 |
| AccII | CGCG | 1 cut(s) | 381 |
| AclWI | GGATC | 1 cut(s) | 106 |
| AcuI | CTGAAG | 1 cut(s) | 101 |
| AfaI | GTAC | 2 cut(s) | 224, 270 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 75, 76, 121, 384, 405, 406 |
| AflIII | ACRYGT | 1 cut(s) | 63 |
| AgsI | TTSAA | 1 cut(s) | 218 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 432 |
| AjnI | CCWGG | 1 cut(s) | 24 |
| AluBI | AGCT | 2 cut(s) | 253, 468 |
| AluI | AGCT | 2 cut(s) | 253, 468 |
| Alw26I | GTCTC | 1 cut(s) | 419 |
| AlwI | GGATC | 1 cut(s) | 106 |
| Ama87I | CYCGRG | 3 cut(s) | 321, 405, 444 |
| AoxI | GGCC | 3 cut(s) | 396, 483, 513 |
| ApeKI | GCWGC | 5 cut(s) | 73, 200, 206, 283, 465 |
| AspLEI | GCGC | 1 cut(s) | 383 |
| AspS9I | GGNCC | 5 cut(s) | 79, 238, 397, 450, 513 |
| AsuC2I | CCSGG | 3 cut(s) | 83, 406, 407 |
| AsuHPI | GGTGA | 2 cut(s) | 97, 176 |
| AvaI | CYCGRG | 3 cut(s) | 321, 405, 444 |
| AvaII | GGWCC | 3 cut(s) | 79, 238, 450 |
| BanI | GGYRCC | 1 cut(s) | 21 |
| BanII | GRGCYC | 1 cut(s) | 318 |
| BbvCI | CCTCAGC | 1 cut(s) | 186 |
| BbvI | GCAGC | 5 cut(s) | 60, 187, 193, 270, 477 |
| BccI | CCATC | 3 cut(s) | 249, 407, 480 |
| BciT130I | CCWGG | 1 cut(s) | 26 |
| BcnI | CCSGG | 3 cut(s) | 83, 406, 407 |
| BcoDI | GTCTC | 1 cut(s) | 419 |
| Bme1390I | CCNGG | 4 cut(s) | 26, 83, 406, 407 |
| Bme18I | GGWCC | 3 cut(s) | 79, 238, 450 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 432 |
| BmeT110I | CYCGRG | 3 cut(s) | 321, 405, 444 |
| BmgT120I | GGNCC | 5 cut(s) | 79, 238, 397, 450, 513 |
| BmiI | GGNNCC | 5 cut(s) | 23, 80, 315, 451, 514 |
| BmrFI | CCNGG | 4 cut(s) | 26, 83, 406, 407 |
| BmrI | ACTGGG | 1 cut(s) | 426 |
| BmuI | ACTGGG | 1 cut(s) | 426 |
| BpmI | CTGGAG | 2 cut(s) | 47, 179 |
| Bpu10I | CCTNAGC | 1 cut(s) | 186 |
| BpuMI | CCSGG | 3 cut(s) | 83, 406, 407 |
| BsaI | GGTCTC | 1 cut(s) | 419 |
| BsaJI | CCNNGG | 5 cut(s) | 48, 245, 300, 405, 445 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 75, 76, 121, 384, 405, 406 |
| Bse1I | ACTGG | 3 cut(s) | 266, 432, 489 |
| Bse3DI | GCAATG | 1 cut(s) | 290 |
| BseBI | CCWGG | 1 cut(s) | 26 |
| BseDI | CCNNGG | 5 cut(s) | 48, 245, 300, 405, 445 |
| BseGI | GGATG | 3 cut(s) | 241, 418, 472 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 75, 76, 121, 384, 405, 406 |
| BseMI | GCAATG | 1 cut(s) | 290 |
| BseMII | CTCAG | 2 cut(s) | 177, 360 |
| BseNI | ACTGG | 3 cut(s) | 266, 432, 489 |
| BseXI | GCAGC | 5 cut(s) | 60, 187, 193, 270, 477 |
| BseYI | CCCAGC | 2 cut(s) | 348, 383 |
| Bsh1236I | CGCG | 1 cut(s) | 381 |
| BshFI | GGCC | 3 cut(s) | 398, 485, 515 |
| BshNI | GGYRCC | 1 cut(s) | 21 |
| BsiHKCI | CYCGRG | 3 cut(s) | 321, 405, 444 |
| BsiSI | CCGG | 2 cut(s) | 82, 406 |
| BslFI | GGGAC | 4 cut(s) | 52, 92, 361, 420 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 75, 76, 121, 384, 405, 406 |
| BsmAI | GTCTC | 1 cut(s) | 419 |
| BsmFI | GGGAC | 4 cut(s) | 52, 92, 361, 420 |
| BsnI | GGCC | 3 cut(s) | 398, 485, 515 |
| Bso31I | GGTCTC | 1 cut(s) | 419 |
| BsoBI | CYCGRG | 3 cut(s) | 321, 405, 444 |
| Bsp1286I | GDGCHC | 1 cut(s) | 318 |
| Bsp143I | GATC | 2 cut(s) | 111, 147 |
| Bsp19I | CCATGG | 1 cut(s) | 300 |
| BspANI | GGCC | 3 cut(s) | 398, 485, 515 |
| BspCNI | CTCAG | 2 cut(s) | 178, 361 |
| BspFNI | CGCG | 1 cut(s) | 381 |
| BspLI | GGNNCC | 5 cut(s) | 23, 80, 315, 451, 514 |
| BspPI | GGATC | 1 cut(s) | 106 |
| BspT107I | GGYRCC | 1 cut(s) | 21 |
| BspTNI | GGTCTC | 1 cut(s) | 419 |
| BsrBI | CCGCTC | 4 cut(s) | 19, 40, 274, 320 |
| BsrDI | GCAATG | 1 cut(s) | 290 |
| BsrI | ACTGG | 3 cut(s) | 266, 432, 489 |
| BssECI | CCNNGG | 5 cut(s) | 48, 245, 300, 405, 445 |
| BssMI | GATC | 2 cut(s) | 111, 147 |
| BssT1I | CCWWGG | 3 cut(s) | 48, 245, 300 |
| Bst2UI | CCWGG | 1 cut(s) | 26 |
| Bst4CI | ACNGT | 1 cut(s) | 366 |
| BstC8I | GCNNGC | 4 cut(s) | 175, 198, 318, 483 |
| BstDEI | CTNAG | 3 cut(s) | 178, 186, 369 |
| BstDSI | CCRYGG | 1 cut(s) | 300 |
| BstF5I | GGATG | 3 cut(s) | 241, 418, 472 |
| BstFNI | CGCG | 1 cut(s) | 381 |
| BstHHI | GCGC | 1 cut(s) | 383 |
| BstKTI | GATC | 2 cut(s) | 114, 150 |
| BstMAI | GTCTC | 1 cut(s) | 419 |
| BstMBI | GATC | 2 cut(s) | 111, 147 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 28, 37, 140, 206, 209, 280, 292, 326, 521 |
| BstNI | CCWGG | 1 cut(s) | 26 |
| BstNSI | RCATGY | 1 cut(s) | 67 |
| BstSCI | CCNGG | 4 cut(s) | 24, 81, 404, 405 |
| BstUI | CGCG | 1 cut(s) | 381 |
| BstV1I | GCAGC | 5 cut(s) | 60, 187, 193, 270, 477 |
| BstX2I | RGATCY | 1 cut(s) | 111 |
| BstYI | RGATCY | 1 cut(s) | 111 |
| BsuRI | GGCC | 3 cut(s) | 398, 485, 515 |
| BtgI | CCRYGG | 1 cut(s) | 300 |
| BtsCI | GGATG | 3 cut(s) | 241, 418, 472 |
| BtsI | GCAGTG | 1 cut(s) | 278 |
| BtsIMutI | CAGTG | 2 cut(s) | 278, 496 |
| Cac8I | GCNNGC | 4 cut(s) | 175, 198, 318, 483 |
| CfoI | GCGC | 1 cut(s) | 383 |
| Cfr13I | GGNCC | 5 cut(s) | 79, 238, 397, 450, 513 |
| Cfr9I | CCCGGG | 1 cut(s) | 405 |
| CseI | GACGC | 1 cut(s) | 364 |
| Csp6I | GTAC | 2 cut(s) | 223, 269 |
| CviAII | CATG | 2 cut(s) | 64, 301 |
| CviQI | GTAC | 2 cut(s) | 223, 269 |
| DdeI | CTNAG | 3 cut(s) | 178, 186, 369 |
| DpnI | GATC | 2 cut(s) | 113, 149 |
| DpnII | GATC | 2 cut(s) | 111, 147 |
| DriI | GACNNNNNGTC | 1 cut(s) | 432 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 432 |
| EciI | GGCGGA | 5 cut(s) | 245, 251, 356, 425, 465 |
| Eco130I | CCWWGG | 3 cut(s) | 48, 245, 300 |
| Eco24I | GRGCYC | 1 cut(s) | 318 |
| Eco31I | GGTCTC | 1 cut(s) | 419 |
| Eco47I | GGWCC | 3 cut(s) | 79, 238, 450 |
| Eco57I | CTGAAG | 1 cut(s) | 101 |
| Eco88I | CYCGRG | 3 cut(s) | 321, 405, 444 |
| EcoRII | CCWGG | 1 cut(s) | 24 |
| EcoT14I | CCWWGG | 3 cut(s) | 48, 245, 300 |
| EcoT38I | GRGCYC | 1 cut(s) | 318 |
| ErhI | CCWWGG | 3 cut(s) | 48, 245, 300 |
| FaeI | CATG | 2 cut(s) | 67, 304 |
| FaiI | YATR | 2 cut(s) | 65, 302 |
| FaqI | GGGAC | 4 cut(s) | 52, 92, 361, 420 |
| FatI | CATG | 2 cut(s) | 63, 300 |
| FauI | CCCGC | 6 cut(s) | 69, 114, 322, 325, 386, 547 |
| FokI | GGATG | 3 cut(s) | 228, 425, 459 |
| FriOI | GRGCYC | 1 cut(s) | 318 |
| GlaI | GCGC | 1 cut(s) | 382 |
| GsaI | CCCAGC | 2 cut(s) | 352, 387 |
| GsuI | CTGGAG | 2 cut(s) | 47, 179 |
| HaeIII | GGCC | 3 cut(s) | 398, 485, 515 |
| HapII | CCGG | 2 cut(s) | 82, 406 |
| HgaI | GACGC | 1 cut(s) | 364 |
| HhaI | GCGC | 1 cut(s) | 383 |
| Hin1II | CATG | 2 cut(s) | 67, 304 |
| Hin6I | GCGC | 1 cut(s) | 381 |
| HinP1I | GCGC | 1 cut(s) | 381 |
| HincII | GTYRAC | 1 cut(s) | 535 |
| HindII | GTYRAC | 1 cut(s) | 535 |
| HinfI | GANTC | 3 cut(s) | 125, 218, 344 |
| HpaII | CCGG | 2 cut(s) | 82, 406 |
| HphI | GGTGA | 2 cut(s) | 97, 176 |
| Hpy166II | GTNNAC | 1 cut(s) | 535 |
| Hpy188I | TCNGA | 2 cut(s) | 370, 454 |
| Hpy188III | TCNNGA | 1 cut(s) | 323 |
| Hpy8I | GTNNAC | 1 cut(s) | 535 |
| HpyAV | CCTTC | 3 cut(s) | 88, 125, 497 |
| HpyCH4III | ACNGT | 1 cut(s) | 366 |
| HpyCH4IV | ACGT | 1 cut(s) | 6 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 28, 37, 140, 206, 209, 280, 292, 326, 521 |
| HpyF3I | CTNAG | 3 cut(s) | 178, 186, 369 |
| HpySE526I | ACGT | 1 cut(s) | 6 |
| Hsp92II | CATG | 2 cut(s) | 67, 304 |
| HspAI | GCGC | 1 cut(s) | 381 |
| Kzo9I | GATC | 2 cut(s) | 111, 147 |
| LmnI | GCTCC | 6 cut(s) | 28, 55, 258, 279, 313, 473 |
| Lsp1109I | GCAGC | 5 cut(s) | 60, 187, 193, 270, 477 |
| MaeII | ACGT | 1 cut(s) | 6 |
| MaeIII | GTNAC | 1 cut(s) | 85 |
| MalI | GATC | 2 cut(s) | 113, 149 |
| MbiI | CCGCTC | 4 cut(s) | 19, 40, 274, 320 |
| MboI | GATC | 2 cut(s) | 111, 147 |
| MboII | GAAGA | 1 cut(s) | 112 |
| MflI | RGATCY | 1 cut(s) | 111 |
| MhlI | GDGCHC | 1 cut(s) | 318 |
| MlyI | GAGTC | 1 cut(s) | 134 |
| MmeI | TCCRAC | 2 cut(s) | 291, 477 |
| MnlI | CCTC | 6 cut(s) | 154, 175, 181, 306, 440, 530 |
| MspA1I | CMGCKG | 3 cut(s) | 121, 212, 352 |
| MspI | CCGG | 2 cut(s) | 82, 406 |
| MspR9I | CCNGG | 4 cut(s) | 26, 83, 406, 407 |
| MvaI | CCWGG | 1 cut(s) | 26 |
| MvnI | CGCG | 1 cut(s) | 381 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 28, 37, 140, 206, 209, 280, 292, 326, 521 |
| NciI | CCSGG | 3 cut(s) | 83, 406, 407 |
| NcoI | CCATGG | 1 cut(s) | 300 |
| NdeII | GATC | 2 cut(s) | 111, 147 |
| NlaIII | CATG | 2 cut(s) | 67, 304 |
| NlaIV | GGNNCC | 5 cut(s) | 23, 80, 315, 451, 514 |
| NmuCI | GTSAC | 1 cut(s) | 85 |
| NspI | RCATGY | 1 cut(s) | 67 |
| PciI | ACATGT | 1 cut(s) | 63 |
| PfeI | GAWTC | 2 cut(s) | 218, 344 |
| PleI | GAGTC | 1 cut(s) | 133 |
| PpsI | GAGTC | 1 cut(s) | 133 |
| PscI | ACATGT | 1 cut(s) | 63 |
| Psp6I | CCWGG | 1 cut(s) | 24 |
| PspFI | CCCAGC | 2 cut(s) | 348, 383 |
| PspGI | CCWGG | 1 cut(s) | 24 |
| PspN4I | GGNNCC | 5 cut(s) | 23, 80, 315, 451, 514 |
| PspPI | GGNCC | 5 cut(s) | 79, 238, 397, 450, 513 |
| PsuI | RGATCY | 1 cut(s) | 111 |
| RsaI | GTAC | 2 cut(s) | 224, 270 |
| RsaNI | GTAC | 2 cut(s) | 223, 269 |
| Sau3AI | GATC | 2 cut(s) | 111, 147 |
| Sau96I | GGNCC | 5 cut(s) | 79, 238, 397, 450, 513 |
| SchI | GAGTC | 1 cut(s) | 134 |
| ScrFI | CCNGG | 4 cut(s) | 26, 83, 406, 407 |
| SduI | GDGCHC | 1 cut(s) | 318 |
| SetI | ASST | 7 cut(s) | 9, 27, 54, 255, 470, 508, 522 |
| SinI | GGWCC | 3 cut(s) | 79, 238, 450 |
| SmaI | CCCGGG | 1 cut(s) | 407 |
| StyD4I | CCNGG | 4 cut(s) | 24, 81, 404, 405 |
| StyI | CCWWGG | 3 cut(s) | 48, 245, 300 |
| TaaI | ACNGT | 1 cut(s) | 366 |
| TaiI | ACGT | 1 cut(s) | 9 |
| TauI | GCSGC | 9 cut(s) | 22, 134, 157, 206, 212, 289, 398, 481, 488 |
| TfiI | GAWTC | 2 cut(s) | 218, 344 |
| TscAI | CASTG | 2 cut(s) | 285, 496 |
| TseFI | GTSAC | 1 cut(s) | 85 |
| TseI | GCWGC | 5 cut(s) | 73, 200, 206, 283, 465 |
| Tsp45I | GTSAC | 1 cut(s) | 85 |
| TspMI | CCCGGG | 1 cut(s) | 405 |
| TspRI | CASTG | 2 cut(s) | 285, 496 |
| VpaK11BI | GGWCC | 3 cut(s) | 79, 238, 450 |
| XceI | RCATGY | 1 cut(s) | 67 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 307 |
| XmaI | CCCGGG | 1 cut(s) | 405 |