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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 210 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 239 |
| AccBSI | CCGCTC | 2 cut(s) | 55, 449 |
| AccII | CGCG | 1 cut(s) | 441 |
| AclI | AACGTT | 1 cut(s) | 360 |
| AcoI | YGGCCR | 2 cut(s) | 221, 444 |
| AcuI | CTGAAG | 2 cut(s) | 8, 363 |
| AfaI | GTAC | 1 cut(s) | 106 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 28, 109, 166, 239, 378 |
| AgsI | TTSAA | 1 cut(s) | 133 |
| AjnI | CCWGG | 1 cut(s) | 377 |
| AluBI | AGCT | 1 cut(s) | 403 |
| AluI | AGCT | 1 cut(s) | 403 |
| Alw26I | GTCTC | 1 cut(s) | 352 |
| AoxI | GGCC | 4 cut(s) | 217, 221, 380, 444 |
| ApeKI | GCWGC | 4 cut(s) | 170, 188, 251, 368 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 346, 378 |
| AspS9I | GGNCC | 5 cut(s) | 199, 299, 321, 354, 390 |
| AsuC2I | CCSGG | 1 cut(s) | 82 |
| AsuHPI | GGTGA | 1 cut(s) | 104 |
| AvaII | GGWCC | 5 cut(s) | 199, 299, 321, 354, 390 |
| BanII | GRGCYC | 1 cut(s) | 410 |
| BbvI | GCAGC | 4 cut(s) | 175, 182, 238, 380 |
| BccI | CCATC | 2 cut(s) | 380, 401 |
| BceAI | ACGGC | 2 cut(s) | 23, 87 |
| BciT130I | CCWGG | 1 cut(s) | 379 |
| BclI | TGATCA | 1 cut(s) | 292 |
| BcnI | CCSGG | 1 cut(s) | 82 |
| BcoDI | GTCTC | 1 cut(s) | 352 |
| BfuAI | ACCTGC | 1 cut(s) | 210 |
| BlpI | GCTNAGC | 1 cut(s) | 404 |
| Bme1390I | CCNGG | 2 cut(s) | 82, 379 |
| Bme18I | GGWCC | 5 cut(s) | 199, 299, 321, 354, 390 |
| BmgT120I | GGNCC | 5 cut(s) | 199, 299, 321, 354, 390 |
| BmiI | GGNNCC | 2 cut(s) | 323, 391 |
| BmrFI | CCNGG | 2 cut(s) | 82, 379 |
| BmrI | ACTGGG | 1 cut(s) | 331 |
| BmuI | ACTGGG | 1 cut(s) | 331 |
| BpmI | CTGGAG | 1 cut(s) | 282 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 404 |
| BpuMI | CCSGG | 1 cut(s) | 82 |
| BsaJI | CCNNGG | 1 cut(s) | 120 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 28, 109, 166, 239, 378 |
| Bse118I | RCCGGY | 1 cut(s) | 219 |
| Bse1I | ACTGG | 2 cut(s) | 265, 337 |
| BseBI | CCWGG | 1 cut(s) | 379 |
| BseDI | CCNNGG | 1 cut(s) | 120 |
| BseGI | GGATG | 2 cut(s) | 18, 313 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 28, 109, 166, 239, 378 |
| BseMII | CTCAG | 3 cut(s) | 237, 269, 395 |
| BseNI | ACTGG | 2 cut(s) | 265, 337 |
| BseRI | GAGGAG | 1 cut(s) | 65 |
| BseX3I | CGGCCG | 1 cut(s) | 221 |
| BseXI | GCAGC | 4 cut(s) | 175, 182, 238, 380 |
| BseYI | CCCAGC | 2 cut(s) | 85, 315 |
| Bsh1236I | CGCG | 1 cut(s) | 441 |
| Bsh1285I | CGRYCG | 1 cut(s) | 224 |
| BshFI | GGCC | 4 cut(s) | 219, 223, 382, 446 |
| BsiEI | CGRYCG | 1 cut(s) | 224 |
| BsiSI | CCGG | 3 cut(s) | 82, 220, 302 |
| BslFI | GGGAC | 1 cut(s) | 403 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 28, 109, 166, 239, 378 |
| BsmAI | GTCTC | 1 cut(s) | 352 |
| BsmFI | GGGAC | 1 cut(s) | 403 |
| BsnI | GGCC | 4 cut(s) | 219, 223, 382, 446 |
| Bsp1286I | GDGCHC | 1 cut(s) | 410 |
| Bsp143I | GATC | 1 cut(s) | 292 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 404 |
| Bsp19I | CCATGG | 1 cut(s) | 120 |
| BspANI | GGCC | 4 cut(s) | 219, 223, 382, 446 |
| BspCNI | CTCAG | 3 cut(s) | 238, 268, 396 |
| BspFNI | CGCG | 1 cut(s) | 441 |
| BspHI | TCATGA | 1 cut(s) | 396 |
| BspLI | GGNNCC | 2 cut(s) | 323, 391 |
| BspMI | ACCTGC | 1 cut(s) | 210 |
| BspQI | GCTCTTC | 1 cut(s) | 92 |
| BsrBI | CCGCTC | 2 cut(s) | 55, 449 |
| BsrFI | RCCGGY | 1 cut(s) | 219 |
| BsrI | ACTGG | 2 cut(s) | 265, 337 |
| BssAI | RCCGGY | 1 cut(s) | 219 |
| BssECI | CCNNGG | 1 cut(s) | 120 |
| BssMI | GATC | 1 cut(s) | 292 |
| BssT1I | CCWWGG | 1 cut(s) | 120 |
| Bst2UI | CCWGG | 1 cut(s) | 379 |
| Bst6I | CTCTTC | 1 cut(s) | 92 |
| BstC8I | GCNNGC | 2 cut(s) | 156, 221 |
| BstDEI | CTNAG | 3 cut(s) | 246, 255, 404 |
| BstDSI | CCRYGG | 1 cut(s) | 120 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 164, 376 |
| BstF5I | GGATG | 2 cut(s) | 18, 313 |
| BstFNI | CGCG | 1 cut(s) | 441 |
| BstKTI | GATC | 1 cut(s) | 295 |
| BstMAI | GTCTC | 1 cut(s) | 352 |
| BstMBI | GATC | 1 cut(s) | 292 |
| BstMCI | CGRYCG | 1 cut(s) | 224 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 229 |
| BstNI | CCWGG | 1 cut(s) | 379 |
| BstSCI | CCNGG | 2 cut(s) | 80, 377 |
| BstUI | CGCG | 1 cut(s) | 441 |
| BstV1I | GCAGC | 4 cut(s) | 175, 182, 238, 380 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 364 |
| BstZI | CGGCCG | 1 cut(s) | 221 |
| BsuRI | GGCC | 4 cut(s) | 219, 223, 382, 446 |
| BtgI | CCRYGG | 1 cut(s) | 120 |
| BtsCI | GGATG | 2 cut(s) | 18, 313 |
| BtsIMutI | CAGTG | 1 cut(s) | 286 |
| BveI | ACCTGC | 1 cut(s) | 210 |
| Cac8I | GCNNGC | 2 cut(s) | 156, 221 |
| CciI | TCATGA | 1 cut(s) | 396 |
| Cfr10I | RCCGGY | 1 cut(s) | 219 |
| Cfr13I | GGNCC | 5 cut(s) | 199, 299, 321, 354, 390 |
| Csp6I | GTAC | 1 cut(s) | 105 |
| CspCI | CAANNNNNGTGG | 1 cut(s) | 423 |
| CviAII | CATG | 3 cut(s) | 121, 296, 397 |
| CviQI | GTAC | 1 cut(s) | 105 |
| DdeI | CTNAG | 3 cut(s) | 246, 255, 404 |
| DpnI | GATC | 1 cut(s) | 294 |
| DpnII | GATC | 1 cut(s) | 292 |
| EaeI | YGGCCR | 2 cut(s) | 221, 444 |
| EagI | CGGCCG | 1 cut(s) | 221 |
| Eam1104I | CTCTTC | 1 cut(s) | 92 |
| EarI | CTCTTC | 1 cut(s) | 92 |
| EciI | GGCGGA | 1 cut(s) | 320 |
| EclXI | CGGCCG | 1 cut(s) | 221 |
| Eco130I | CCWWGG | 1 cut(s) | 120 |
| Eco24I | GRGCYC | 1 cut(s) | 410 |
| Eco47I | GGWCC | 5 cut(s) | 199, 299, 321, 354, 390 |
| Eco52I | CGGCCG | 1 cut(s) | 221 |
| Eco57I | CTGAAG | 2 cut(s) | 8, 363 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 164, 376 |
| EcoRII | CCWGG | 1 cut(s) | 377 |
| EcoT14I | CCWWGG | 1 cut(s) | 120 |
| EcoT38I | GRGCYC | 1 cut(s) | 410 |
| ErhI | CCWWGG | 1 cut(s) | 120 |
| FaeI | CATG | 3 cut(s) | 124, 299, 400 |
| FaiI | YATR | 6 cut(s) | 122, 148, 150, 297, 375, 398 |
| FaqI | GGGAC | 1 cut(s) | 403 |
| FatI | CATG | 3 cut(s) | 120, 295, 396 |
| FauI | CCCGC | 1 cut(s) | 21 |
| FbaI | TGATCA | 1 cut(s) | 292 |
| FokI | GGATG | 2 cut(s) | 5, 320 |
| FriOI | GRGCYC | 1 cut(s) | 410 |
| FseI | GGCCGGCC | 1 cut(s) | 223 |
| GsaI | CCCAGC | 2 cut(s) | 89, 319 |
| GsuI | CTGGAG | 1 cut(s) | 282 |
| HaeIII | GGCC | 4 cut(s) | 219, 223, 382, 446 |
| HapII | CCGG | 3 cut(s) | 82, 220, 302 |
| Hin1II | CATG | 3 cut(s) | 124, 299, 400 |
| HincII | GTYRAC | 1 cut(s) | 16 |
| HindII | GTYRAC | 1 cut(s) | 16 |
| HinfI | GANTC | 3 cut(s) | 32, 125, 311 |
| HpaII | CCGG | 3 cut(s) | 82, 220, 302 |
| HphI | GGTGA | 1 cut(s) | 104 |
| Hpy166II | GTNNAC | 1 cut(s) | 16 |
| Hpy188I | TCNGA | 5 cut(s) | 247, 258, 343, 354, 427 |
| Hpy188III | TCNNGA | 2 cut(s) | 43, 397 |
| Hpy8I | GTNNAC | 1 cut(s) | 16 |
| HpyAV | CCTTC | 3 cut(s) | 32, 139, 209 |
| HpyCH4IV | ACGT | 1 cut(s) | 360 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 229 |
| HpyF3I | CTNAG | 3 cut(s) | 246, 255, 404 |
| HpySE526I | ACGT | 1 cut(s) | 360 |
| Hsp92II | CATG | 3 cut(s) | 124, 299, 400 |
| KroI | GCCGGC | 1 cut(s) | 219 |
| KroNI | GCCGGC | 1 cut(s) | 221 |
| Ksp22I | TGATCA | 1 cut(s) | 292 |
| Kzo9I | GATC | 1 cut(s) | 292 |
| LguI | GCTCTTC | 1 cut(s) | 92 |
| LmnI | GCTCC | 1 cut(s) | 52 |
| Lsp1109I | GCAGC | 4 cut(s) | 175, 182, 238, 380 |
| MaeII | ACGT | 1 cut(s) | 360 |
| MalI | GATC | 1 cut(s) | 294 |
| MbiI | CCGCTC | 2 cut(s) | 55, 449 |
| MboI | GATC | 1 cut(s) | 292 |
| MboII | GAAGA | 3 cut(s) | 70, 109, 224 |
| MhlI | GDGCHC | 1 cut(s) | 410 |
| MluCI | AATT | 1 cut(s) | 193 |
| MlyI | GAGTC | 2 cut(s) | 41, 305 |
| MmeI | TCCRAC | 1 cut(s) | 45 |
| MnlI | CCTC | 7 cut(s) | 43, 61, 67, 83, 103, 160, 241 |
| MroNI | GCCGGC | 1 cut(s) | 219 |
| MspA1I | CMGCKG | 2 cut(s) | 28, 319 |
| MspI | CCGG | 3 cut(s) | 82, 220, 302 |
| MspR9I | CCNGG | 2 cut(s) | 82, 379 |
| MvaI | CCWGG | 1 cut(s) | 379 |
| MvnI | CGCG | 1 cut(s) | 441 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 229 |
| NaeI | GCCGGC | 1 cut(s) | 221 |
| NciI | CCSGG | 1 cut(s) | 82 |
| NcoI | CCATGG | 1 cut(s) | 120 |
| NdeII | GATC | 1 cut(s) | 292 |
| NgoMIV | GCCGGC | 1 cut(s) | 219 |
| NlaIII | CATG | 3 cut(s) | 124, 299, 400 |
| NlaIV | GGNNCC | 2 cut(s) | 323, 391 |
| PagI | TCATGA | 1 cut(s) | 396 |
| PciSI | GCTCTTC | 1 cut(s) | 92 |
| PdiI | GCCGGC | 1 cut(s) | 221 |
| PfeI | GAWTC | 1 cut(s) | 125 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 239 |
| PleI | GAGTC | 2 cut(s) | 40, 305 |
| PpsI | GAGTC | 2 cut(s) | 40, 305 |
| Psp1406I | AACGTT | 1 cut(s) | 360 |
| Psp6I | CCWGG | 1 cut(s) | 377 |
| PspFI | CCCAGC | 2 cut(s) | 85, 315 |
| PspGI | CCWGG | 1 cut(s) | 377 |
| PspN4I | GGNNCC | 2 cut(s) | 323, 391 |
| PspPI | GGNCC | 5 cut(s) | 199, 299, 321, 354, 390 |
| RigI | GGCCGGCC | 1 cut(s) | 223 |
| RsaI | GTAC | 1 cut(s) | 106 |
| RsaNI | GTAC | 1 cut(s) | 105 |
| SapI | GCTCTTC | 1 cut(s) | 92 |
| Sau3AI | GATC | 1 cut(s) | 292 |
| Sau96I | GGNCC | 5 cut(s) | 199, 299, 321, 354, 390 |
| SchI | GAGTC | 2 cut(s) | 41, 305 |
| ScrFI | CCNGG | 2 cut(s) | 82, 379 |
| SduI | GDGCHC | 1 cut(s) | 410 |
| SetI | ASST | 7 cut(s) | 15, 78, 94, 114, 204, 363, 405 |
| SinI | GGWCC | 5 cut(s) | 199, 299, 321, 354, 390 |
| Sse9I | AATT | 1 cut(s) | 193 |
| StyD4I | CCNGG | 2 cut(s) | 80, 377 |
| StyI | CCWWGG | 1 cut(s) | 120 |
| TaiI | ACGT | 1 cut(s) | 363 |
| TasI | AATT | 1 cut(s) | 193 |
| TauI | GCSGC | 6 cut(s) | 119, 146, 226, 416, 441, 449 |
| TfiI | GAWTC | 1 cut(s) | 125 |
| TscAI | CASTG | 1 cut(s) | 286 |
| TseI | GCWGC | 4 cut(s) | 170, 188, 251, 368 |
| TspDTI | ATGAA | 1 cut(s) | 413 |
| TspRI | CASTG | 1 cut(s) | 286 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 239 |
| VpaK11BI | GGWCC | 5 cut(s) | 199, 299, 321, 354, 390 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 164, 376 |