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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 37 |
| AccII | CGCG | 1 cut(s) | 426 |
| AclWI | GGATC | 2 cut(s) | 49, 62 |
| AcyI | GRCGYC | 1 cut(s) | 14 |
| AfaI | GTAC | 1 cut(s) | 376 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 328 |
| AgsI | TTSAA | 1 cut(s) | 251 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 390 |
| AjnI | CCWGG | 5 cut(s) | 6, 27, 57, 113, 348 |
| AluBI | AGCT | 3 cut(s) | 22, 164, 461 |
| AluI | AGCT | 3 cut(s) | 22, 164, 461 |
| Alw21I | GWGCWC | 1 cut(s) | 259 |
| Alw26I | GTCTC | 1 cut(s) | 377 |
| AlwI | GGATC | 2 cut(s) | 49, 62 |
| Ama87I | CYCGRG | 3 cut(s) | 262, 363, 402 |
| AoxI | GGCC | 2 cut(s) | 234, 354 |
| ApeKI | GCWGC | 2 cut(s) | 22, 164 |
| AspLEI | GCGC | 1 cut(s) | 428 |
| AspS9I | GGNCC | 3 cut(s) | 172, 235, 355 |
| AsuHPI | GGTGA | 3 cut(s) | 139, 235, 308 |
| AvaI | CYCGRG | 3 cut(s) | 262, 363, 402 |
| AvaII | GGWCC | 1 cut(s) | 172 |
| BamHI | GGATCC | 1 cut(s) | 54 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 223, 255 |
| Bbv12I | GWGCWC | 1 cut(s) | 259 |
| BbvI | GCAGC | 2 cut(s) | 9, 151 |
| BciT130I | CCWGG | 5 cut(s) | 8, 29, 59, 115, 350 |
| BcoDI | GTCTC | 1 cut(s) | 377 |
| BfmI | CTRYAG | 1 cut(s) | 165 |
| BisI | GCNGC | 7 cut(s) | 12, 23, 111, 165, 354, 424, 437 |
| BlsI | GCNGC | 7 cut(s) | 13, 24, 112, 166, 355, 425, 438 |
| Bme1390I | CCNGG | 5 cut(s) | 8, 29, 59, 115, 350 |
| Bme18I | GGWCC | 1 cut(s) | 172 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 390 |
| BmeT110I | CYCGRG | 3 cut(s) | 262, 363, 402 |
| BmgT120I | GGNCC | 3 cut(s) | 172, 235, 355 |
| BmiI | GGNNCC | 3 cut(s) | 56, 173, 237 |
| BmrFI | CCNGG | 5 cut(s) | 8, 29, 59, 115, 350 |
| BmrI | ACTGGG | 1 cut(s) | 316 |
| BmuI | ACTGGG | 1 cut(s) | 316 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 266, 298, 268, 300 |
| BpmI | CTGGAG | 1 cut(s) | 186 |
| BpuEI | CTTGAG | 1 cut(s) | 86 |
| BsaHI | GRCGYC | 1 cut(s) | 14 |
| BsaJI | CCNNGG | 3 cut(s) | 27, 58, 403 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 328 |
| Bse118I | RCCGGY | 2 cut(s) | 220, 289 |
| Bse1I | ACTGG | 2 cut(s) | 141, 322 |
| BseBI | CCWGG | 5 cut(s) | 8, 29, 59, 115, 350 |
| BseDI | CCNNGG | 3 cut(s) | 27, 58, 403 |
| BseGI | GGATG | 1 cut(s) | 430 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 328 |
| BseMII | CTCAG | 2 cut(s) | 58, 149 |
| BseNI | ACTGG | 2 cut(s) | 141, 322 |
| BseRI | GAGGAG | 2 cut(s) | 137, 303 |
| BseXI | GCAGC | 2 cut(s) | 9, 151 |
| BseYI | CCCAGC | 1 cut(s) | 303 |
| Bsh1236I | CGCG | 1 cut(s) | 426 |
| BshFI | GGCC | 2 cut(s) | 236, 356 |
| BsiHKAI | GWGCWC | 1 cut(s) | 259 |
| BsiHKCI | CYCGRG | 3 cut(s) | 262, 363, 402 |
| BsiSI | CCGG | 2 cut(s) | 221, 290 |
| BslFI | GGGAC | 3 cut(s) | 185, 200, 319 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 328 |
| BsmAI | GTCTC | 1 cut(s) | 377 |
| BsmFI | GGGAC | 3 cut(s) | 185, 200, 319 |
| BsnI | GGCC | 2 cut(s) | 236, 356 |
| BsoBI | CYCGRG | 3 cut(s) | 262, 363, 402 |
| Bsp1286I | GDGCHC | 1 cut(s) | 259 |
| Bsp1407I | TGTACA | 1 cut(s) | 374 |
| Bsp143I | GATC | 1 cut(s) | 54 |
| BspANI | GGCC | 2 cut(s) | 236, 356 |
| BspCNI | CTCAG | 2 cut(s) | 57, 150 |
| BspFNI | CGCG | 1 cut(s) | 426 |
| BspLI | GGNNCC | 3 cut(s) | 56, 173, 237 |
| BspMAI | CTGCAG | 1 cut(s) | 169 |
| BspPI | GGATC | 2 cut(s) | 49, 62 |
| BsrBI | CCGCTC | 1 cut(s) | 37 |
| BsrFI | RCCGGY | 2 cut(s) | 220, 289 |
| BsrGI | TGTACA | 1 cut(s) | 374 |
| BsrI | ACTGG | 2 cut(s) | 141, 322 |
| BssAI | RCCGGY | 2 cut(s) | 220, 289 |
| BssECI | CCNNGG | 3 cut(s) | 27, 58, 403 |
| BssMI | GATC | 1 cut(s) | 54 |
| BssNI | GRCGYC | 1 cut(s) | 14 |
| Bst2UI | CCWGG | 5 cut(s) | 8, 29, 59, 115, 350 |
| Bst4CI | ACNGT | 2 cut(s) | 187, 374 |
| Bst6I | CTCTTC | 1 cut(s) | 221 |
| BstACI | GRCGYC | 1 cut(s) | 14 |
| BstAUI | TGTACA | 1 cut(s) | 374 |
| BstC8I | GCNNGC | 2 cut(s) | 154, 259 |
| BstDEI | CTNAG | 3 cut(s) | 18, 44, 158 |
| BstEII | GGTNACC | 1 cut(s) | 296 |
| BstF5I | GGATG | 1 cut(s) | 430 |
| BstFNI | CGCG | 1 cut(s) | 426 |
| BstHHI | GCGC | 1 cut(s) | 428 |
| BstKTI | GATC | 1 cut(s) | 57 |
| BstMAI | GTCTC | 1 cut(s) | 377 |
| BstMBI | GATC | 1 cut(s) | 54 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 188 |
| BstNI | CCWGG | 5 cut(s) | 8, 29, 59, 115, 350 |
| BstPI | GGTNACC | 1 cut(s) | 296 |
| BstSCI | CCNGG | 5 cut(s) | 6, 27, 57, 113, 348 |
| BstSFI | CTRYAG | 1 cut(s) | 165 |
| BstUI | CGCG | 1 cut(s) | 426 |
| BstV1I | GCAGC | 2 cut(s) | 9, 151 |
| BstX2I | RGATCY | 1 cut(s) | 54 |
| BstYI | RGATCY | 1 cut(s) | 54 |
| BsuRI | GGCC | 2 cut(s) | 236, 356 |
| BtsCI | GGATG | 1 cut(s) | 430 |
| Cac8I | GCNNGC | 2 cut(s) | 154, 259 |
| CfoI | GCGC | 1 cut(s) | 428 |
| Cfr10I | RCCGGY | 2 cut(s) | 220, 289 |
| Cfr13I | GGNCC | 3 cut(s) | 172, 235, 355 |
| CseI | GACGC | 1 cut(s) | 3 |
| Csp6I | GTAC | 1 cut(s) | 375 |
| CviJI | RGCY | 8 cut(s) | 22, 164, 236, 282, 356, 423, 461, 467 |
| CviKI_1 | RGCY | 8 cut(s) | 22, 164, 236, 282, 356, 423, 461, 467 |
| CviQI | GTAC | 1 cut(s) | 375 |
| DdeI | CTNAG | 3 cut(s) | 18, 44, 158 |
| DpnI | GATC | 1 cut(s) | 56 |
| DpnII | GATC | 1 cut(s) | 54 |
| DriI | GACNNNNNGTC | 1 cut(s) | 390 |
| Eam1104I | CTCTTC | 1 cut(s) | 221 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 390 |
| EarI | CTCTTC | 1 cut(s) | 221 |
| EciI | GGCGGA | 2 cut(s) | 95, 423 |
| Eco47I | GGWCC | 1 cut(s) | 172 |
| Eco88I | CYCGRG | 3 cut(s) | 262, 363, 402 |
| Eco91I | GGTNACC | 1 cut(s) | 296 |
| EcoO65I | GGTNACC | 1 cut(s) | 296 |
| EcoRII | CCWGG | 5 cut(s) | 6, 27, 57, 113, 348 |
| FaiI | YATR | 1 cut(s) | 233 |
| FaqI | GGGAC | 3 cut(s) | 185, 200, 319 |
| FauI | CCCGC | 4 cut(s) | 30, 93, 225, 286 |
| Fnu4HI | GCNGC | 7 cut(s) | 12, 23, 111, 165, 354, 424, 437 |
| FokI | GGATG | 1 cut(s) | 417 |
| Fsp4HI | GCNGC | 7 cut(s) | 12, 23, 111, 165, 354, 424, 437 |
| GlaI | GCGC | 1 cut(s) | 427 |
| GluI | GCNGC | 7 cut(s) | 12, 23, 111, 165, 354, 424, 437 |
| GsaI | CCCAGC | 1 cut(s) | 307 |
| GsuI | CTGGAG | 1 cut(s) | 186 |
| HaeIII | GGCC | 2 cut(s) | 236, 356 |
| HapII | CCGG | 2 cut(s) | 221, 290 |
| HgaI | GACGC | 1 cut(s) | 3 |
| HhaI | GCGC | 1 cut(s) | 428 |
| Hin1I | GRCGYC | 1 cut(s) | 14 |
| Hin6I | GCGC | 1 cut(s) | 426 |
| HinP1I | GCGC | 1 cut(s) | 426 |
| HinfI | GANTC | 3 cut(s) | 104, 310, 385 |
| HpaII | CCGG | 2 cut(s) | 221, 290 |
| HphI | GGTGA | 3 cut(s) | 139, 235, 308 |
| Hpy188I | TCNGA | 2 cut(s) | 328, 412 |
| Hpy188III | TCNNGA | 1 cut(s) | 65 |
| Hpy99I | CGWCG | 1 cut(s) | 191 |
| HpyAV | CCTTC | 2 cut(s) | 245, 249 |
| HpyCH4III | ACNGT | 2 cut(s) | 187, 374 |
| HpyCH4V | TGCA | 1 cut(s) | 167 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 188 |
| HpyF3I | CTNAG | 3 cut(s) | 18, 44, 158 |
| Hsp92I | GRCGYC | 1 cut(s) | 14 |
| HspAI | GCGC | 1 cut(s) | 426 |
| Kzo9I | GATC | 1 cut(s) | 54 |
| Lsp1109I | GCAGC | 2 cut(s) | 9, 151 |
| MaeIII | GTNAC | 1 cut(s) | 296 |
| MalI | GATC | 1 cut(s) | 56 |
| MbiI | CCGCTC | 1 cut(s) | 37 |
| MboI | GATC | 1 cut(s) | 54 |
| MboII | GAAGA | 4 cut(s) | 142, 220, 238, 467 |
| MflI | RGATCY | 1 cut(s) | 54 |
| MhlI | GDGCHC | 1 cut(s) | 259 |
| MlyI | GAGTC | 3 cut(s) | 113, 304, 379 |
| MmeI | TCCRAC | 2 cut(s) | 306, 419 |
| MspA1I | CMGCKG | 1 cut(s) | 307 |
| MspI | CCGG | 2 cut(s) | 221, 290 |
| MspR9I | CCNGG | 5 cut(s) | 8, 29, 59, 115, 350 |
| MvaI | CCWGG | 5 cut(s) | 8, 29, 59, 115, 350 |
| MvnI | CGCG | 1 cut(s) | 426 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 188 |
| NdeII | GATC | 1 cut(s) | 54 |
| NlaIV | GGNNCC | 3 cut(s) | 56, 173, 237 |
| NmuCI | GTSAC | 1 cut(s) | 296 |
| PaeR7I | CTCGAG | 1 cut(s) | 363 |
| PkrI | GCNGC | 7 cut(s) | 13, 24, 112, 166, 355, 425, 438 |
| PleI | GAGTC | 3 cut(s) | 112, 304, 379 |
| PpsI | GAGTC | 3 cut(s) | 112, 304, 379 |
| Psp6I | CCWGG | 5 cut(s) | 6, 27, 57, 113, 348 |
| PspEI | GGTNACC | 1 cut(s) | 296 |
| PspFI | CCCAGC | 1 cut(s) | 303 |
| PspGI | CCWGG | 5 cut(s) | 6, 27, 57, 113, 348 |
| PspN4I | GGNNCC | 3 cut(s) | 56, 173, 237 |
| PspPI | GGNCC | 3 cut(s) | 172, 235, 355 |
| PspXI | VCTCGAGB | 1 cut(s) | 363 |
| PstI | CTGCAG | 1 cut(s) | 169 |
| PsuI | RGATCY | 1 cut(s) | 54 |
| RsaI | GTAC | 1 cut(s) | 376 |
| RsaNI | GTAC | 1 cut(s) | 375 |
| SatI | GCNGC | 7 cut(s) | 12, 23, 111, 165, 354, 424, 437 |
| Sau3AI | GATC | 1 cut(s) | 54 |
| Sau96I | GGNCC | 3 cut(s) | 172, 235, 355 |
| SchI | GAGTC | 3 cut(s) | 113, 304, 379 |
| ScrFI | CCNGG | 5 cut(s) | 8, 29, 59, 115, 350 |
| SduI | GDGCHC | 1 cut(s) | 259 |
| SetI | ASST | 7 cut(s) | 24, 98, 129, 166, 256, 333, 463 |
| SfcI | CTRYAG | 1 cut(s) | 165 |
| Sfr274I | CTCGAG | 1 cut(s) | 363 |
| SgrAI | CRCCGGYG | 1 cut(s) | 220 |
| SinI | GGWCC | 1 cut(s) | 172 |
| SlaI | CTCGAG | 1 cut(s) | 363 |
| SmlI | CTYRAG | 2 cut(s) | 65, 363 |
| SmoI | CTYRAG | 2 cut(s) | 65, 363 |
| StyD4I | CCNGG | 5 cut(s) | 6, 27, 57, 113, 348 |
| TaaI | ACNGT | 2 cut(s) | 187, 374 |
| TaqI | TCGA | 1 cut(s) | 364 |
| TatI | WGTACW | 1 cut(s) | 374 |
| TauI | GCSGC | 5 cut(s) | 14, 113, 356, 426, 439 |
| TseFI | GTSAC | 1 cut(s) | 296 |
| TseI | GCWGC | 2 cut(s) | 22, 164 |
| Tsp45I | GTSAC | 1 cut(s) | 296 |
| VpaK11BI | GGWCC | 1 cut(s) | 172 |
| XhoI | CTCGAG | 1 cut(s) | 363 |