Putative gypsy type transposon
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 12 |
| Acc36I | ACCTGC | 1 cut(s) | 700 |
| AccB1I | GGYRCC | 3 cut(s) | 335, 1252, 1958 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 159, 588, 1978 |
| AccBSI | CCGCTC | 5 cut(s) | 244, 1486, 1513, 1651, 1965 |
| AccI | GTMKAC | 2 cut(s) | 724, 1550 |
| AccII | CGCG | 5 cut(s) | 187, 900, 907, 1059, 2019 |
| AccIII | TCCGGA | 1 cut(s) | 38 |
| AclWI | GGATC | 3 cut(s) | 49, 451, 2029 |
| AcoI | YGGCCR | 3 cut(s) | 3, 1428, 1776 |
| AcsI | RAATTY | 2 cut(s) | 73, 537 |
| AcuI | CTGAAG | 5 cut(s) | 66, 300, 410, 1558, 2082 |
| AcyI | GRCGYC | 5 cut(s) | 9, 727, 1035, 1628, 1729 |
| AdeI | CACNNNGTG | 1 cut(s) | 490 |
| AfaI | GTAC | 2 cut(s) | 1091, 1990 |
| AflIII | ACRYGT | 1 cut(s) | 585 |
| AgsI | TTSAA | 3 cut(s) | 24, 536, 1004 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2004 |
| AjiI | CACGTC | 1 cut(s) | 1414 |
| AjnI | CCWGG | 8 cut(s) | 327, 501, 729, 834, 1077, 1164, 1701, 1977 |
| AluBI | AGCT | 6 cut(s) | 424, 745, 1138, 1530, 1657, 1774 |
| AluI | AGCT | 6 cut(s) | 424, 745, 1138, 1530, 1657, 1774 |
| Alw21I | GWGCWC | 4 cut(s) | 327, 486, 1296, 1659 |
| Alw26I | GTCTC | 4 cut(s) | 956, 1076, 1223, 1991 |
| Alw44I | GTGCAC | 2 cut(s) | 482, 1292 |
| AlwI | GGATC | 3 cut(s) | 49, 451, 2029 |
| Ama87I | CYCGRG | 3 cut(s) | 1360, 1397, 1641 |
| Aor13HI | TCCGGA | 1 cut(s) | 38 |
| ApaLI | GTGCAC | 2 cut(s) | 482, 1292 |
| ApeKI | GCWGC | 9 cut(s) | 215, 263, 661, 1210, 1345, 1606, 1636, 1754, 2050 |
| ApoI | RAATTY | 2 cut(s) | 73, 537 |
| AspLEI | GCGC | 9 cut(s) | 607, 693, 739, 907, 1061, 1273, 1287, 1311, 1888 |
| AspS9I | GGNCC | 6 cut(s) | 786, 828, 1054, 1438, 1675, 1699 |
| AsuC2I | CCSGG | 6 cut(s) | 411, 1014, 1099, 1282, 1642, 1643 |
| AsuHPI | GGTGA | 8 cut(s) | 430, 502, 1135, 1214, 1270, 1318, 1493, 1811 |
| AvaI | CYCGRG | 3 cut(s) | 1360, 1397, 1641 |
| AvaII | GGWCC | 3 cut(s) | 828, 1054, 1438 |
| AxyI | CCTNAGG | 1 cut(s) | 1814 |
| BaeGI | GKGCMC | 4 cut(s) | 486, 1296, 1593, 1963 |
| BanI | GGYRCC | 3 cut(s) | 335, 1252, 1958 |
| BanII | GRGCYC | 3 cut(s) | 1361, 1393, 1659 |
| BauI | CACGAG | 5 cut(s) | 485, 993, 1432, 1610, 1966 |
| BbsI | GAAGAC | 1 cut(s) | 1121 |
| Bbv12I | GWGCWC | 4 cut(s) | 327, 486, 1296, 1659 |
| BbvCI | CCTCAGC | 1 cut(s) | 1821 |
| BbvI | GCAGC | 9 cut(s) | 202, 275, 648, 1197, 1357, 1593, 1648, 1766, 2037 |
| BccI | CCATC | 3 cut(s) | 1200, 1949, 1979 |
| BceAI | ACGGC | 7 cut(s) | 349, 362, 983, 1014, 1202, 1541, 1805 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1388, 1422, 1733, 1767 |
| BciT130I | CCWGG | 8 cut(s) | 329, 503, 731, 836, 1079, 1166, 1703, 1979 |
| BcnI | CCSGG | 6 cut(s) | 411, 1014, 1099, 1282, 1642, 1643 |
| BcoDI | GTCTC | 4 cut(s) | 956, 1076, 1223, 1991 |
| BfaI | CTAG | 5 cut(s) | 131, 201, 521, 867, 1442 |
| BfmI | CTRYAG | 1 cut(s) | 1679 |
| BfoI | RGCGCY | 5 cut(s) | 608, 694, 740, 1274, 1889 |
| BfuAI | ACCTGC | 1 cut(s) | 700 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1223 |
| BglII | AGATCT | 1 cut(s) | 573 |
| BlpI | GCTNAGC | 1 cut(s) | 1145 |
| Bme18I | GGWCC | 3 cut(s) | 828, 1054, 1438 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2004 |
| BmeT110I | CYCGRG | 3 cut(s) | 1360, 1397, 1641 |
| BmgBI | CACGTC | 1 cut(s) | 1414 |
| BmgT120I | GGNCC | 6 cut(s) | 786, 828, 1054, 1438, 1675, 1699 |
| BmsI | GCATC | 4 cut(s) | 295, 588, 1750, 1906 |
| BpiI | GAAGAC | 1 cut(s) | 1121 |
| BplI | GAGNNNNNCTC | 3 cut(s) | 437, 469, 2079 |
| BpmI | CTGGAG | 3 cut(s) | 311, 1100, 1814 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1658, 1821, 1911 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1145 |
| BpuMI | CCSGG | 6 cut(s) | 411, 1014, 1099, 1282, 1642, 1643 |
| BsaHI | GRCGYC | 5 cut(s) | 9, 727, 1035, 1628, 1729 |
| BsaI | GGTCTC | 2 cut(s) | 1076, 1991 |
| BsaWI | WCCGGW | 2 cut(s) | 38, 402 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 833, 863, 1073, 1103, 1481, 1511 |
| Bse118I | RCCGGY | 1 cut(s) | 384 |
| Bse1I | ACTGG | 5 cut(s) | 267, 681, 964, 1237, 1274 |
| Bse21I | CCTNAGG | 1 cut(s) | 1814 |
| BseAI | TCCGGA | 1 cut(s) | 38 |
| BseBI | CCWGG | 8 cut(s) | 329, 503, 731, 836, 1079, 1166, 1703, 1979 |
| BseGI | GGATG | 6 cut(s) | 310, 369, 402, 1324, 1921, 1990 |
| BseNI | ACTGG | 5 cut(s) | 267, 681, 964, 1237, 1274 |
| BseRI | GAGGAG | 2 cut(s) | 458, 1679 |
| BseSI | GKGCMC | 4 cut(s) | 486, 1296, 1593, 1963 |
| BseXI | GCAGC | 9 cut(s) | 202, 275, 648, 1197, 1357, 1593, 1648, 1766, 2037 |
| BseYI | CCCAGC | 2 cut(s) | 963, 1312 |
| BsgI | GTGCAG | 2 cut(s) | 282, 1592 |
| Bsh1236I | CGCG | 5 cut(s) | 187, 900, 907, 1059, 2019 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1554, 1842 |
| BshNI | GGYRCC | 3 cut(s) | 335, 1252, 1958 |
| BsiEI | CGRYCG | 2 cut(s) | 1554, 1842 |
| BsiHKAI | GWGCWC | 4 cut(s) | 327, 486, 1296, 1659 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1360, 1397, 1641 |
| BsiSI | CCGG | 9 cut(s) | 39, 385, 403, 411, 1013, 1098, 1282, 1642, 2054 |
| BslFI | GGGAC | 3 cut(s) | 176, 1451, 1700 |
| BsmAI | GTCTC | 4 cut(s) | 956, 1076, 1223, 1991 |
| BsmBI | CGTCTC | 1 cut(s) | 956 |
| BsmFI | GGGAC | 3 cut(s) | 176, 1451, 1700 |
| Bso31I | GGTCTC | 2 cut(s) | 1076, 1991 |
| BsoBI | CYCGRG | 3 cut(s) | 1360, 1397, 1641 |
| Bsp1286I | GDGCHC | 8 cut(s) | 327, 486, 1296, 1361, 1393, 1593, 1659, 1963 |
| Bsp13I | TCCGGA | 1 cut(s) | 38 |
| Bsp143I | GATC | 6 cut(s) | 41, 456, 573, 979, 1065, 2021 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1145 |
| Bsp19I | CCATGG | 1 cut(s) | 1050 |
| BspEI | TCCGGA | 1 cut(s) | 38 |
| BspFNI | CGCG | 5 cut(s) | 187, 900, 907, 1059, 2019 |
| BspMI | ACCTGC | 1 cut(s) | 700 |
| BspPI | GGATC | 3 cut(s) | 49, 451, 2029 |
| BspQI | GCTCTTC | 1 cut(s) | 234 |
| BspT107I | GGYRCC | 3 cut(s) | 335, 1252, 1958 |
| BspTNI | GGTCTC | 2 cut(s) | 1076, 1991 |
| BsrBI | CCGCTC | 5 cut(s) | 244, 1486, 1513, 1651, 1965 |
| BsrFI | RCCGGY | 1 cut(s) | 384 |
| BsrI | ACTGG | 5 cut(s) | 267, 681, 964, 1237, 1274 |
| BssAI | RCCGGY | 1 cut(s) | 384 |
| BssMI | GATC | 6 cut(s) | 41, 456, 573, 979, 1065, 2021 |
| BssNI | GRCGYC | 5 cut(s) | 9, 727, 1035, 1628, 1729 |
| BssSI | CACGAG | 5 cut(s) | 485, 993, 1432, 1610, 1966 |
| BssT1I | CCWWGG | 2 cut(s) | 694, 1050 |
| Bst2BI | CACGAG | 5 cut(s) | 485, 993, 1432, 1610, 1966 |
| Bst2UI | CCWGG | 8 cut(s) | 329, 503, 731, 836, 1079, 1166, 1703, 1979 |
| Bst4CI | ACNGT | 7 cut(s) | 159, 439, 649, 1120, 1306, 1330, 1481 |
| Bst6I | CTCTTC | 2 cut(s) | 234, 885 |
| BstACI | GRCGYC | 5 cut(s) | 9, 727, 1035, 1628, 1729 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1760 |
| BstDSI | CCRYGG | 4 cut(s) | 158, 1050, 1765, 2017 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1736 |
| BstF5I | GGATG | 6 cut(s) | 310, 369, 402, 1324, 1921, 1990 |
| BstFNI | CGCG | 5 cut(s) | 187, 900, 907, 1059, 2019 |
| BstH2I | RGCGCY | 5 cut(s) | 608, 694, 740, 1274, 1889 |
| BstHHI | GCGC | 9 cut(s) | 607, 693, 739, 907, 1061, 1273, 1287, 1311, 1888 |
| BstKTI | GATC | 6 cut(s) | 44, 459, 576, 982, 1068, 2024 |
| BstMAI | GTCTC | 4 cut(s) | 956, 1076, 1223, 1991 |
| BstMBI | GATC | 6 cut(s) | 41, 456, 573, 979, 1065, 2021 |
| BstMCI | CGRYCG | 2 cut(s) | 1554, 1842 |
| BstNI | CCWGG | 8 cut(s) | 329, 503, 731, 836, 1079, 1166, 1703, 1979 |
| BstNSI | RCATGY | 1 cut(s) | 1387 |
| BstSFI | CTRYAG | 1 cut(s) | 1679 |
| BstSLI | GKGCMC | 4 cut(s) | 486, 1296, 1593, 1963 |
| BstUI | CGCG | 5 cut(s) | 187, 900, 907, 1059, 2019 |
| BstV1I | GCAGC | 9 cut(s) | 202, 275, 648, 1197, 1357, 1593, 1648, 1766, 2037 |
| BstV2I | GAAGAC | 1 cut(s) | 1121 |
| BstX2I | RGATCY | 3 cut(s) | 41, 573, 2021 |
| BstYI | RGATCY | 3 cut(s) | 41, 573, 2021 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1814 |
| BtgI | CCRYGG | 4 cut(s) | 158, 1050, 1765, 2017 |
| BtrI | CACGTC | 1 cut(s) | 1414 |
| BtsCI | GGATG | 6 cut(s) | 310, 369, 402, 1324, 1921, 1990 |
| BtsI | GCAGTG | 2 cut(s) | 34, 116 |
| BtsIMutI | CAGTG | 5 cut(s) | 34, 116, 274, 1311, 2058 |
| BveI | ACCTGC | 1 cut(s) | 700 |
| CfoI | GCGC | 9 cut(s) | 607, 693, 739, 907, 1061, 1273, 1287, 1311, 1888 |
| Cfr10I | RCCGGY | 1 cut(s) | 384 |
| Cfr13I | GGNCC | 6 cut(s) | 786, 828, 1054, 1438, 1675, 1699 |
| Cfr42I | CCGCGG | 1 cut(s) | 2020 |
| Cfr9I | CCCGGG | 1 cut(s) | 1641 |
| CseI | GACGC | 6 cut(s) | 80, 176, 735, 1043, 1617, 1737 |
| Csp6I | GTAC | 2 cut(s) | 1090, 1989 |
| CviAII | CATG | 5 cut(s) | 769, 1051, 1087, 1177, 1384 |
| CviQI | GTAC | 2 cut(s) | 1090, 1989 |
| DpnI | GATC | 6 cut(s) | 43, 458, 575, 981, 1067, 2023 |
| DpnII | GATC | 6 cut(s) | 41, 456, 573, 979, 1065, 2021 |
| DraIII | CACNNNGTG | 1 cut(s) | 490 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2004 |
| EaeI | YGGCCR | 3 cut(s) | 3, 1428, 1776 |
| Eam1104I | CTCTTC | 2 cut(s) | 234, 885 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2004 |
| EarI | CTCTTC | 2 cut(s) | 234, 885 |
| EciI | GGCGGA | 9 cut(s) | 368, 420, 488, 668, 940, 999, 1241, 1383, 1886 |
| Ecl136II | GAGCTC | 1 cut(s) | 1657 |
| Eco130I | CCWWGG | 2 cut(s) | 694, 1050 |
| Eco147I | AGGCCT | 2 cut(s) | 452, 1366 |
| Eco24I | GRGCYC | 3 cut(s) | 1361, 1393, 1659 |
| Eco31I | GGTCTC | 2 cut(s) | 1076, 1991 |
| Eco47I | GGWCC | 3 cut(s) | 828, 1054, 1438 |
| Eco53kI | GAGCTC | 1 cut(s) | 1657 |
| Eco57I | CTGAAG | 5 cut(s) | 66, 300, 410, 1558, 2082 |
| Eco81I | CCTNAGG | 1 cut(s) | 1814 |
| Eco88I | CYCGRG | 3 cut(s) | 1360, 1397, 1641 |
| EcoICRI | GAGCTC | 1 cut(s) | 1657 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1736 |
| EcoO109I | RGGNCCY | 2 cut(s) | 786, 1438 |
| EcoRII | CCWGG | 8 cut(s) | 327, 501, 729, 834, 1077, 1164, 1701, 1977 |
| EcoT14I | CCWWGG | 2 cut(s) | 694, 1050 |
| EcoT38I | GRGCYC | 3 cut(s) | 1361, 1393, 1659 |
| ErhI | CCWWGG | 2 cut(s) | 694, 1050 |
| Esp3I | CGTCTC | 1 cut(s) | 956 |
| FaeI | CATG | 5 cut(s) | 772, 1054, 1090, 1180, 1387 |
| FaqI | GGGAC | 3 cut(s) | 176, 1451, 1700 |
| FatI | CATG | 5 cut(s) | 768, 1050, 1086, 1176, 1383 |
| FblI | GTMKAC | 2 cut(s) | 724, 1550 |
| FokI | GGATG | 6 cut(s) | 317, 376, 409, 1331, 1928, 1997 |
| FriOI | GRGCYC | 3 cut(s) | 1361, 1393, 1659 |
| FspBI | CTAG | 5 cut(s) | 131, 201, 521, 867, 1442 |
| GlaI | GCGC | 9 cut(s) | 606, 692, 738, 906, 1060, 1272, 1286, 1310, 1887 |
| GsaI | CCCAGC | 2 cut(s) | 967, 1316 |
| GsuI | CTGGAG | 3 cut(s) | 311, 1100, 1814 |
| HaeII | RGCGCY | 5 cut(s) | 608, 694, 740, 1274, 1889 |
| HapII | CCGG | 9 cut(s) | 39, 385, 403, 411, 1013, 1098, 1282, 1642, 2054 |
| HgaI | GACGC | 6 cut(s) | 80, 176, 735, 1043, 1617, 1737 |
| HhaI | GCGC | 9 cut(s) | 607, 693, 739, 907, 1061, 1273, 1287, 1311, 1888 |
| Hin1I | GRCGYC | 5 cut(s) | 9, 727, 1035, 1628, 1729 |
| Hin1II | CATG | 5 cut(s) | 772, 1054, 1090, 1180, 1387 |
| Hin6I | GCGC | 9 cut(s) | 605, 691, 737, 905, 1059, 1271, 1285, 1309, 1886 |
| HinP1I | GCGC | 9 cut(s) | 605, 691, 737, 905, 1059, 1271, 1285, 1309, 1886 |
| HincII | GTYRAC | 4 cut(s) | 382, 725, 1551, 1561 |
| HindII | GTYRAC | 4 cut(s) | 382, 725, 1551, 1561 |
| HinfI | GANTC | 9 cut(s) | 35, 83, 311, 721, 764, 880, 928, 991, 1853 |
| HpaII | CCGG | 9 cut(s) | 39, 385, 403, 411, 1013, 1098, 1282, 1642, 2054 |
| HphI | GGTGA | 8 cut(s) | 430, 502, 1135, 1214, 1270, 1318, 1493, 1811 |
| Hpy166II | GTNNAC | 7 cut(s) | 382, 484, 725, 1126, 1294, 1551, 1561 |
| Hpy188I | TCNGA | 5 cut(s) | 46, 914, 1113, 1156, 2026 |
| Hpy188III | TCNNGA | 3 cut(s) | 39, 191, 718 |
| Hpy8I | GTNNAC | 7 cut(s) | 382, 484, 725, 1126, 1294, 1551, 1561 |
| Hpy99I | CGWCG | 9 cut(s) | 11, 439, 729, 808, 850, 1354, 1633, 1731, 1927 |
| HpyCH4III | ACNGT | 7 cut(s) | 159, 439, 649, 1120, 1306, 1330, 1481 |
| HpyCH4IV | ACGT | 5 cut(s) | 9, 165, 585, 848, 1413 |
| HpySE526I | ACGT | 5 cut(s) | 9, 165, 585, 848, 1413 |
| Hsp92I | GRCGYC | 5 cut(s) | 9, 727, 1035, 1628, 1729 |
| Hsp92II | CATG | 5 cut(s) | 772, 1054, 1090, 1180, 1387 |
| HspAI | GCGC | 9 cut(s) | 605, 691, 737, 905, 1059, 1271, 1285, 1309, 1886 |
| Kpn2I | TCCGGA | 1 cut(s) | 38 |
| KspI | CCGCGG | 1 cut(s) | 2020 |
| Kzo9I | GATC | 6 cut(s) | 41, 456, 573, 979, 1065, 2021 |
| LguI | GCTCTTC | 1 cut(s) | 234 |
| LmnI | GCTCC | 9 cut(s) | 330, 734, 841, 1342, 1396, 1654, 1723, 1827, 1924 |
| Lsp1109I | GCAGC | 9 cut(s) | 202, 275, 648, 1197, 1357, 1593, 1648, 1766, 2037 |
| LweI | GCATC | 4 cut(s) | 295, 588, 1750, 1906 |
| MaeI | CTAG | 5 cut(s) | 131, 201, 521, 867, 1442 |
| MaeII | ACGT | 5 cut(s) | 9, 165, 585, 848, 1413 |
| MaeIII | GTNAC | 4 cut(s) | 508, 1031, 1202, 1276 |
| MalI | GATC | 6 cut(s) | 43, 458, 575, 981, 1067, 2023 |
| MbiI | CCGCTC | 5 cut(s) | 244, 1486, 1513, 1651, 1965 |
| MboI | GATC | 6 cut(s) | 41, 456, 573, 979, 1065, 2021 |
| MboII | GAAGA | 3 cut(s) | 251, 902, 1126 |
| MflI | RGATCY | 3 cut(s) | 41, 573, 2021 |
| MhlI | GDGCHC | 8 cut(s) | 327, 486, 1296, 1361, 1393, 1593, 1659, 1963 |
| MluCI | AATT | 2 cut(s) | 73, 537 |
| MlyI | GAGTC | 6 cut(s) | 77, 320, 730, 874, 985, 1862 |
| MmeI | TCCRAC | 2 cut(s) | 855, 1320 |
| MroI | TCCGGA | 1 cut(s) | 38 |
| MseI | TTAA | 3 cut(s) | 858, 1544, 1785 |
| MspA1I | CMGCKG | 5 cut(s) | 479, 1316, 1847, 2019, 2050 |
| MspI | CCGG | 9 cut(s) | 39, 385, 403, 411, 1013, 1098, 1282, 1642, 2054 |
| MvaI | CCWGG | 8 cut(s) | 329, 503, 731, 836, 1079, 1166, 1703, 1979 |
| MvnI | CGCG | 5 cut(s) | 187, 900, 907, 1059, 2019 |
| NciI | CCSGG | 6 cut(s) | 411, 1014, 1099, 1282, 1642, 1643 |
| NcoI | CCATGG | 1 cut(s) | 1050 |
| NdeII | GATC | 6 cut(s) | 41, 456, 573, 979, 1065, 2021 |
| NlaIII | CATG | 5 cut(s) | 772, 1054, 1090, 1180, 1387 |
| NmeAIII | GCCGAG | 2 cut(s) | 1489, 1804 |
| NmuCI | GTSAC | 4 cut(s) | 508, 1031, 1202, 1276 |
| NspI | RCATGY | 1 cut(s) | 1387 |
| PaeI | GCATGC | 1 cut(s) | 1387 |
| PaeR7I | CTCGAG | 1 cut(s) | 1360 |
| PceI | AGGCCT | 2 cut(s) | 452, 1366 |
| PciSI | GCTCTTC | 1 cut(s) | 234 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 92, 184, 339, 1358 |
| PfeI | GAWTC | 3 cut(s) | 35, 764, 928 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 159, 588, 1978 |
| PfoI | TCCNGGA | 2 cut(s) | 327, 1077 |
| PleI | GAGTC | 6 cut(s) | 77, 319, 729, 874, 985, 1861 |
| PpsI | GAGTC | 6 cut(s) | 77, 319, 729, 874, 985, 1861 |
| PpuMI | RGGWCCY | 1 cut(s) | 1438 |
| Psp124BI | GAGCTC | 1 cut(s) | 1659 |
| Psp5II | RGGWCCY | 1 cut(s) | 1438 |
| Psp6I | CCWGG | 8 cut(s) | 327, 501, 729, 834, 1077, 1164, 1701, 1977 |
| PspFI | CCCAGC | 2 cut(s) | 963, 1312 |
| PspGI | CCWGG | 8 cut(s) | 327, 501, 729, 834, 1077, 1164, 1701, 1977 |
| PspPI | GGNCC | 6 cut(s) | 786, 828, 1054, 1438, 1675, 1699 |
| PspPPI | RGGWCCY | 1 cut(s) | 1438 |
| PspXI | VCTCGAGB | 1 cut(s) | 1360 |
| PsuI | RGATCY | 3 cut(s) | 41, 573, 2021 |
| RsaI | GTAC | 2 cut(s) | 1091, 1990 |
| RsaNI | GTAC | 2 cut(s) | 1090, 1989 |
| SacI | GAGCTC | 1 cut(s) | 1659 |
| SacII | CCGCGG | 1 cut(s) | 2020 |
| SalI | GTCGAC | 2 cut(s) | 723, 1549 |
| SapI | GCTCTTC | 1 cut(s) | 234 |
| SaqAI | TTAA | 3 cut(s) | 858, 1544, 1785 |
| Sau3AI | GATC | 6 cut(s) | 41, 456, 573, 979, 1065, 2021 |
| Sau96I | GGNCC | 6 cut(s) | 786, 828, 1054, 1438, 1675, 1699 |
| SchI | GAGTC | 6 cut(s) | 77, 320, 730, 874, 985, 1862 |
| SduI | GDGCHC | 8 cut(s) | 327, 486, 1296, 1361, 1393, 1593, 1659, 1963 |
| SfaNI | GCATC | 4 cut(s) | 295, 588, 1750, 1906 |
| SfcI | CTRYAG | 1 cut(s) | 1679 |
| Sfr274I | CTCGAG | 1 cut(s) | 1360 |
| Sfr303I | CCGCGG | 1 cut(s) | 2020 |
| SgrBI | CCGCGG | 1 cut(s) | 2020 |
| SinI | GGWCC | 3 cut(s) | 828, 1054, 1438 |
| SlaI | CTCGAG | 1 cut(s) | 1360 |
| SmaI | CCCGGG | 1 cut(s) | 1643 |
| SmlI | CTYRAG | 1 cut(s) | 1360 |
| SmoI | CTYRAG | 1 cut(s) | 1360 |
| SphI | GCATGC | 1 cut(s) | 1387 |
| Sse9I | AATT | 2 cut(s) | 73, 537 |
| SseBI | AGGCCT | 2 cut(s) | 452, 1366 |
| SspMI | CTAG | 5 cut(s) | 131, 201, 521, 867, 1442 |
| SstI | GAGCTC | 1 cut(s) | 1659 |
| StuI | AGGCCT | 2 cut(s) | 452, 1366 |
| StyI | CCWWGG | 2 cut(s) | 694, 1050 |
| TaaI | ACNGT | 7 cut(s) | 159, 439, 649, 1120, 1306, 1330, 1481 |
| TaiI | ACGT | 5 cut(s) | 12, 168, 588, 851, 1416 |
| TaqI | TCGA | 8 cut(s) | 455, 724, 978, 1068, 1361, 1550, 1631, 2076 |
| TaqII | GACCGA | 1 cut(s) | 1907 |
| TasI | AATT | 2 cut(s) | 73, 537 |
| TfiI | GAWTC | 3 cut(s) | 35, 764, 928 |
| Tru1I | TTAA | 3 cut(s) | 858, 1544, 1785 |
| Tru9I | TTAA | 3 cut(s) | 858, 1544, 1785 |
| TscAI | CASTG | 5 cut(s) | 34, 123, 274, 1311, 2065 |
| TseFI | GTSAC | 4 cut(s) | 508, 1031, 1202, 1276 |
| TseI | GCWGC | 9 cut(s) | 215, 263, 661, 1210, 1345, 1606, 1636, 1754, 2050 |
| Tsp45I | GTSAC | 4 cut(s) | 508, 1031, 1202, 1276 |
| TspGWI | ACGGA | 2 cut(s) | 84, 1911 |
| TspMI | CCCGGG | 1 cut(s) | 1641 |
| TspRI | CASTG | 5 cut(s) | 34, 123, 274, 1311, 2065 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 159, 588, 1978 |
| VneI | GTGCAC | 2 cut(s) | 482, 1292 |
| VpaK11BI | GGWCC | 3 cut(s) | 828, 1054, 1438 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1736 |
| XapI | RAATTY | 2 cut(s) | 73, 537 |
| XceI | RCATGY | 1 cut(s) | 1387 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1193 |
| XhoI | CTCGAG | 1 cut(s) | 1360 |
| XmaI | CCCGGG | 1 cut(s) | 1641 |
| XmiI | GTMKAC | 2 cut(s) | 724, 1550 |
| XspI | CTAG | 5 cut(s) | 131, 201, 521, 867, 1442 |
| ZraI | GACGTC | 1 cut(s) | 10 |