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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 12 |
| Acc36I | ACCTGC | 1 cut(s) | 765 |
| Acc65I | GGTACC | 1 cut(s) | 523 |
| AccB1I | GGYRCC | 6 cut(s) | 335, 523, 1276, 2057, 2093, 2186 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 159, 541, 588, 2103 |
| AccBSI | CCGCTC | 4 cut(s) | 1495, 1660, 1801, 1813 |
| AccI | GTMKAC | 1 cut(s) | 1559 |
| AccIII | TCCGGA | 1 cut(s) | 38 |
| AclWI | GGATC | 3 cut(s) | 49, 1888, 2344 |
| AcoI | YGGCCR | 2 cut(s) | 3, 1869 |
| AcsI | RAATTY | 1 cut(s) | 537 |
| AcuI | CTGAAG | 6 cut(s) | 66, 300, 410, 1567, 1883, 2061 |
| AcyI | GRCGYC | 5 cut(s) | 9, 1059, 1738, 2094, 2114 |
| AfaI | GTAC | 7 cut(s) | 181, 525, 683, 1115, 1469, 1554, 2305 |
| AgsI | TTSAA | 5 cut(s) | 24, 1028, 1691, 1837, 2008 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2319 |
| AjiI | CACGTC | 1 cut(s) | 1729 |
| AjnI | CCWGG | 6 cut(s) | 729, 1101, 1539, 1710, 1806, 1959 |
| AluBI | AGCT | 8 cut(s) | 247, 424, 745, 884, 987, 1525, 1666, 2138 |
| AluI | AGCT | 8 cut(s) | 247, 424, 745, 884, 987, 1525, 1666, 2138 |
| Alw21I | GWGCWC | 1 cut(s) | 486 |
| Alw26I | GTCTC | 4 cut(s) | 980, 1100, 2268, 2306 |
| AlwI | GGATC | 3 cut(s) | 49, 1888, 2344 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 508 |
| Ama87I | CYCGRG | 4 cut(s) | 1441, 1650, 2194, 2292 |
| Aor13HI | TCCGGA | 1 cut(s) | 38 |
| ApoI | RAATTY | 1 cut(s) | 537 |
| AscI | GGCGCGCC | 1 cut(s) | 1373 |
| Asp718I | GGTACC | 1 cut(s) | 523 |
| AspS9I | GGNCC | 9 cut(s) | 641, 786, 828, 1078, 1438, 1684, 1708, 1732, 1804 |
| AsuC2I | CCSGG | 8 cut(s) | 411, 1038, 1123, 1651, 1652, 1927, 2293, 2294 |
| AsuHPI | GGTGA | 6 cut(s) | 430, 1159, 1502, 1502, 1958, 2345 |
| AsuNHI | GCTAGC | 1 cut(s) | 247 |
| AvaI | CYCGRG | 4 cut(s) | 1441, 1650, 2194, 2292 |
| AvaII | GGWCC | 6 cut(s) | 641, 786, 828, 1078, 1732, 1804 |
| BaeGI | GKGCMC | 4 cut(s) | 711, 1602, 2062, 2191 |
| BanI | GGYRCC | 6 cut(s) | 335, 523, 1276, 2057, 2093, 2186 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2155, 2187 |
| BauI | CACGAG | 2 cut(s) | 485, 2265 |
| BbsI | GAAGAC | 2 cut(s) | 316, 1145 |
| Bbv12I | GWGCWC | 1 cut(s) | 486 |
| BbvCI | CCTCAGC | 1 cut(s) | 1968 |
| BccI | CCATC | 4 cut(s) | 804, 1224, 2177, 2294 |
| BceAI | ACGGC | 8 cut(s) | 349, 362, 1007, 1038, 1226, 1322, 1605, 2353 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1742, 1768, 1776, 1802 |
| BciT130I | CCWGG | 6 cut(s) | 731, 1103, 1541, 1712, 1808, 1961 |
| BciVI | GTATCC | 1 cut(s) | 944 |
| BclI | TGATCA | 1 cut(s) | 1003 |
| BcnI | CCSGG | 8 cut(s) | 411, 1038, 1123, 1651, 1652, 1927, 2293, 2294 |
| BcoDI | GTCTC | 4 cut(s) | 980, 1100, 2268, 2306 |
| BfaI | CTAG | 9 cut(s) | 122, 131, 201, 248, 984, 1451, 1917, 2063, 2309 |
| BfmI | CTRYAG | 1 cut(s) | 2081 |
| BfoI | RGCGCY | 7 cut(s) | 608, 694, 740, 1169, 1298, 2036, 2097 |
| BfuAI | ACCTGC | 1 cut(s) | 765 |
| BfuI | GTATCC | 1 cut(s) | 944 |
| BlpI | GCTNAGC | 1 cut(s) | 1169 |
| Bme18I | GGWCC | 6 cut(s) | 641, 786, 828, 1078, 1732, 1804 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2319 |
| BmeT110I | CYCGRG | 4 cut(s) | 1441, 1650, 2194, 2292 |
| BmgBI | CACGTC | 1 cut(s) | 1729 |
| BmgT120I | GGNCC | 9 cut(s) | 641, 786, 828, 1078, 1438, 1684, 1708, 1732, 1804 |
| BmrI | ACTGGG | 2 cut(s) | 1377, 2245 |
| BmsI | GCATC | 7 cut(s) | 295, 588, 1750, 1759, 2067, 2134, 2377 |
| BmtI | GCTAGC | 1 cut(s) | 251 |
| BmuI | ACTGGG | 2 cut(s) | 1377, 2245 |
| BpiI | GAAGAC | 2 cut(s) | 316, 1145 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 437, 469 |
| BpmI | CTGGAG | 3 cut(s) | 1124, 1562, 1829 |
| Bpu10I | CCTNAGC | 4 cut(s) | 1667, 1875, 1968, 2139 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1169 |
| BpuEI | CTTGAG | 1 cut(s) | 739 |
| BpuMI | CCSGG | 8 cut(s) | 411, 1038, 1123, 1651, 1652, 1927, 2293, 2294 |
| BsaAI | YACGTR | 3 cut(s) | 685, 712, 932 |
| BsaHI | GRCGYC | 5 cut(s) | 9, 1059, 1738, 2094, 2114 |
| BsaWI | WCCGGW | 2 cut(s) | 38, 402 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 516, 546, 833, 863, 1097, 1127 |
| Bse118I | RCCGGY | 3 cut(s) | 384, 2054, 2152 |
| Bse1I | ACTGG | 6 cut(s) | 267, 782, 1261, 1372, 2164, 2251 |
| BseAI | TCCGGA | 1 cut(s) | 38 |
| BseBI | CCWGG | 6 cut(s) | 731, 1103, 1541, 1712, 1808, 1961 |
| BseMII | CTCAG | 6 cut(s) | 300, 1077, 1148, 1170, 1959, 2189 |
| BseNI | ACTGG | 6 cut(s) | 267, 782, 1261, 1372, 2164, 2251 |
| BsePI | GCGCGC | 1 cut(s) | 1373 |
| BseRI | GAGGAG | 4 cut(s) | 458, 668, 1023, 1688 |
| BseSI | GKGCMC | 4 cut(s) | 711, 1602, 2062, 2191 |
| BseYI | CCCAGC | 6 cut(s) | 884, 987, 1336, 1525, 2235, 2270 |
| BsgI | GTGCAG | 3 cut(s) | 282, 647, 1601 |
| Bsh1285I | CGRYCG | 3 cut(s) | 1559, 1563, 2127 |
| BshNI | GGYRCC | 6 cut(s) | 335, 523, 1276, 2057, 2093, 2186 |
| BsiEI | CGRYCG | 3 cut(s) | 1559, 1563, 2127 |
| BsiHKAI | GWGCWC | 1 cut(s) | 486 |
| BsiHKCI | CYCGRG | 4 cut(s) | 1441, 1650, 2194, 2292 |
| BslFI | GGGAC | 6 cut(s) | 176, 519, 654, 799, 1817, 1834 |
| BsmAI | GTCTC | 4 cut(s) | 980, 1100, 2268, 2306 |
| BsmBI | CGTCTC | 1 cut(s) | 980 |
| BsmFI | GGGAC | 6 cut(s) | 176, 519, 654, 799, 1817, 1834 |
| BsoBI | CYCGRG | 4 cut(s) | 1441, 1650, 2194, 2292 |
| Bsp1286I | GDGCHC | 5 cut(s) | 486, 711, 1602, 2062, 2191 |
| Bsp13I | TCCGGA | 1 cut(s) | 38 |
| Bsp143I | GATC | 8 cut(s) | 41, 747, 1003, 1089, 1362, 1861, 1893, 2336 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1169 |
| Bsp19I | CCATGG | 1 cut(s) | 1074 |
| Bsp68I | TCGCGA | 1 cut(s) | 909 |
| BspCNI | CTCAG | 6 cut(s) | 301, 1078, 1147, 1171, 1960, 2188 |
| BspEI | TCCGGA | 1 cut(s) | 38 |
| BspMAI | CTGCAG | 1 cut(s) | 2085 |
| BspMI | ACCTGC | 1 cut(s) | 765 |
| BspOI | GCTAGC | 1 cut(s) | 251 |
| BspPI | GGATC | 3 cut(s) | 49, 1888, 2344 |
| BspQI | GCTCTTC | 1 cut(s) | 234 |
| BspT107I | GGYRCC | 6 cut(s) | 335, 523, 1276, 2057, 2093, 2186 |
| BsrBI | CCGCTC | 4 cut(s) | 1495, 1660, 1801, 1813 |
| BsrFI | RCCGGY | 3 cut(s) | 384, 2054, 2152 |
| BsrI | ACTGG | 6 cut(s) | 267, 782, 1261, 1372, 2164, 2251 |
| BssAI | RCCGGY | 3 cut(s) | 384, 2054, 2152 |
| BssHII | GCGCGC | 1 cut(s) | 1373 |
| BssMI | GATC | 8 cut(s) | 41, 747, 1003, 1089, 1362, 1861, 1893, 2336 |
| BssNI | GRCGYC | 5 cut(s) | 9, 1059, 1738, 2094, 2114 |
| BssSI | CACGAG | 2 cut(s) | 485, 2265 |
| BssT1I | CCWWGG | 4 cut(s) | 694, 937, 1074, 1407 |
| Bst2BI | CACGAG | 2 cut(s) | 485, 2265 |
| Bst2UI | CCWGG | 6 cut(s) | 731, 1103, 1541, 1712, 1808, 1961 |
| Bst6I | CTCTTC | 2 cut(s) | 234, 909 |
| BstACI | GRCGYC | 5 cut(s) | 9, 1059, 1738, 2094, 2114 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1769 |
| BstBAI | YACGTR | 3 cut(s) | 685, 712, 932 |
| BstDSI | CCRYGG | 5 cut(s) | 158, 1074, 1188, 1774, 2332 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1745 |
| BstH2I | RGCGCY | 7 cut(s) | 608, 694, 740, 1169, 1298, 2036, 2097 |
| BstKTI | GATC | 8 cut(s) | 44, 750, 1006, 1092, 1365, 1864, 1896, 2339 |
| BstMAI | GTCTC | 4 cut(s) | 980, 1100, 2268, 2306 |
| BstMBI | GATC | 8 cut(s) | 41, 747, 1003, 1089, 1362, 1861, 1893, 2336 |
| BstMCI | CGRYCG | 3 cut(s) | 1559, 1563, 2127 |
| BstNI | CCWGG | 6 cut(s) | 731, 1103, 1541, 1712, 1808, 1961 |
| BstSFI | CTRYAG | 1 cut(s) | 2081 |
| BstSLI | GKGCMC | 4 cut(s) | 711, 1602, 2062, 2191 |
| BstV2I | GAAGAC | 2 cut(s) | 316, 1145 |
| BstX2I | RGATCY | 3 cut(s) | 41, 1893, 2336 |
| BstYI | RGATCY | 3 cut(s) | 41, 1893, 2336 |
| BsuI | GTATCC | 1 cut(s) | 944 |
| BtgI | CCRYGG | 5 cut(s) | 158, 1074, 1188, 1774, 2332 |
| BtrI | CACGTC | 1 cut(s) | 1729 |
| BtsI | GCAGTG | 3 cut(s) | 34, 116, 1770 |
| BtsIMutI | CAGTG | 6 cut(s) | 34, 116, 274, 1335, 1365, 1770 |
| BtuMI | TCGCGA | 1 cut(s) | 909 |
| BveI | ACCTGC | 1 cut(s) | 765 |
| CaiI | CAGNNNCTG | 1 cut(s) | 508 |
| Cfr10I | RCCGGY | 3 cut(s) | 384, 2054, 2152 |
| Cfr13I | GGNCC | 9 cut(s) | 641, 786, 828, 1078, 1438, 1684, 1708, 1732, 1804 |
| Cfr42I | CCGCGG | 2 cut(s) | 1777, 2335 |
| Cfr9I | CCCGGG | 2 cut(s) | 1650, 2292 |
| CseI | GACGC | 6 cut(s) | 80, 176, 416, 1067, 1746, 2103 |
| Csp6I | GTAC | 7 cut(s) | 180, 524, 682, 1114, 1468, 1553, 2304 |
| CviAII | CATG | 6 cut(s) | 318, 329, 769, 1019, 1075, 1201 |
| CviQI | GTAC | 7 cut(s) | 180, 524, 682, 1114, 1468, 1553, 2304 |
| DinI | GGCGCC | 1 cut(s) | 2095 |
| DpnI | GATC | 8 cut(s) | 43, 749, 1005, 1091, 1364, 1863, 1895, 2338 |
| DpnII | GATC | 8 cut(s) | 41, 747, 1003, 1089, 1362, 1861, 1893, 2336 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2319 |
| EaeI | YGGCCR | 2 cut(s) | 3, 1869 |
| Eam1104I | CTCTTC | 2 cut(s) | 234, 909 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2319 |
| EarI | CTCTTC | 2 cut(s) | 234, 909 |
| EciI | GGCGGA | 6 cut(s) | 80, 420, 964, 2139, 2312, 2352 |
| Eco130I | CCWWGG | 4 cut(s) | 694, 937, 1074, 1407 |
| Eco147I | AGGCCT | 1 cut(s) | 452 |
| Eco47I | GGWCC | 6 cut(s) | 641, 786, 828, 1078, 1732, 1804 |
| Eco57I | CTGAAG | 6 cut(s) | 66, 300, 410, 1567, 1883, 2061 |
| Eco88I | CYCGRG | 4 cut(s) | 1441, 1650, 2194, 2292 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1745 |
| EcoO109I | RGGNCCY | 2 cut(s) | 786, 1804 |
| EcoRII | CCWGG | 6 cut(s) | 729, 1101, 1539, 1710, 1806, 1959 |
| EcoT14I | CCWWGG | 4 cut(s) | 694, 937, 1074, 1407 |
| EgeI | GGCGCC | 1 cut(s) | 2095 |
| EheI | GGCGCC | 1 cut(s) | 2095 |
| ErhI | CCWWGG | 4 cut(s) | 694, 937, 1074, 1407 |
| Esp3I | CGTCTC | 1 cut(s) | 980 |
| FaeI | CATG | 6 cut(s) | 321, 332, 772, 1022, 1078, 1204 |
| FaqI | GGGAC | 6 cut(s) | 176, 519, 654, 799, 1817, 1834 |
| FatI | CATG | 6 cut(s) | 317, 328, 768, 1018, 1074, 1200 |
| FauNDI | CATATG | 1 cut(s) | 587 |
| FbaI | TGATCA | 1 cut(s) | 1003 |
| FblI | GTMKAC | 1 cut(s) | 1559 |
| FspBI | CTAG | 9 cut(s) | 122, 131, 201, 248, 984, 1451, 1917, 2063, 2309 |
| GsaI | CCCAGC | 6 cut(s) | 888, 991, 1340, 1529, 2239, 2274 |
| GsuI | CTGGAG | 3 cut(s) | 1124, 1562, 1829 |
| HaeII | RGCGCY | 7 cut(s) | 608, 694, 740, 1169, 1298, 2036, 2097 |
| HgaI | GACGC | 6 cut(s) | 80, 176, 416, 1067, 1746, 2103 |
| Hin1I | GRCGYC | 5 cut(s) | 9, 1059, 1738, 2094, 2114 |
| Hin1II | CATG | 6 cut(s) | 321, 332, 772, 1022, 1078, 1204 |
| HincII | GTYRAC | 3 cut(s) | 382, 1560, 1570 |
| HindII | GTYRAC | 3 cut(s) | 382, 1560, 1570 |
| HphI | GGTGA | 6 cut(s) | 430, 1159, 1502, 1502, 1958, 2345 |
| Hpy166II | GTNNAC | 9 cut(s) | 382, 682, 715, 1150, 1254, 1560, 1570, 1732, 2306 |
| Hpy188I | TCNGA | 7 cut(s) | 46, 865, 881, 1137, 1180, 1474, 2341 |
| Hpy188III | TCNNGA | 6 cut(s) | 39, 191, 751, 908, 1247, 1480 |
| Hpy8I | GTNNAC | 9 cut(s) | 382, 682, 715, 1150, 1254, 1560, 1570, 1732, 2306 |
| Hpy99I | CGWCG | 9 cut(s) | 11, 439, 808, 1490, 1568, 1642, 1740, 1793, 2227 |
| HpyCH4IV | ACGT | 7 cut(s) | 9, 165, 684, 711, 931, 1422, 1728 |
| HpySE526I | ACGT | 7 cut(s) | 9, 165, 684, 711, 931, 1422, 1728 |
| Hsp92I | GRCGYC | 5 cut(s) | 9, 1059, 1738, 2094, 2114 |
| Hsp92II | CATG | 6 cut(s) | 321, 332, 772, 1022, 1078, 1204 |
| KasI | GGCGCC | 1 cut(s) | 2093 |
| Kpn2I | TCCGGA | 1 cut(s) | 38 |
| KpnI | GGTACC | 1 cut(s) | 527 |
| KroI | GCCGGC | 1 cut(s) | 2152 |
| KroNI | GCCGGC | 1 cut(s) | 2154 |
| Ksp22I | TGATCA | 1 cut(s) | 1003 |
| KspI | CCGCGG | 2 cut(s) | 1777, 2335 |
| Kzo9I | GATC | 8 cut(s) | 41, 747, 1003, 1089, 1362, 1861, 1893, 2336 |
| LguI | GCTCTTC | 1 cut(s) | 234 |
| LmnI | GCTCC | 7 cut(s) | 734, 841, 1417, 1663, 1810, 1974, 2152 |
| LweI | GCATC | 7 cut(s) | 295, 588, 1750, 1759, 2067, 2134, 2377 |
| MaeI | CTAG | 9 cut(s) | 122, 131, 201, 248, 984, 1451, 1917, 2063, 2309 |
| MaeII | ACGT | 7 cut(s) | 9, 165, 684, 711, 931, 1422, 1728 |
| MaeIII | GTNAC | 3 cut(s) | 1055, 1226, 2351 |
| MalI | GATC | 8 cut(s) | 43, 749, 1005, 1091, 1364, 1863, 1895, 2338 |
| MbiI | CCGCTC | 4 cut(s) | 1495, 1660, 1801, 1813 |
| MboI | GATC | 8 cut(s) | 41, 747, 1003, 1089, 1362, 1861, 1893, 2336 |
| MboII | GAAGA | 7 cut(s) | 251, 316, 452, 923, 926, 1150, 1396 |
| MflI | RGATCY | 3 cut(s) | 41, 1893, 2336 |
| MhlI | GDGCHC | 5 cut(s) | 486, 711, 1602, 2062, 2191 |
| MluCI | AATT | 4 cut(s) | 537, 674, 1816, 1823 |
| Mly113I | GGCGCC | 1 cut(s) | 2094 |
| MlyI | GAGTC | 7 cut(s) | 320, 898, 1009, 1448, 1916, 2009, 2236 |
| MmeI | TCCRAC | 4 cut(s) | 843, 855, 1920, 2235 |
| MroI | TCCGGA | 1 cut(s) | 38 |
| MroNI | GCCGGC | 1 cut(s) | 2152 |
| MseI | TTAA | 2 cut(s) | 858, 1932 |
| MspA1I | CMGCKG | 9 cut(s) | 467, 520, 1340, 1525, 1776, 1903, 1994, 2239, 2334 |
| MvaI | CCWGG | 6 cut(s) | 731, 1103, 1541, 1712, 1808, 1961 |
| NaeI | GCCGGC | 1 cut(s) | 2154 |
| NarI | GGCGCC | 1 cut(s) | 2094 |
| NciI | CCSGG | 8 cut(s) | 411, 1038, 1123, 1651, 1652, 1927, 2293, 2294 |
| NcoI | CCATGG | 1 cut(s) | 1074 |
| NdeI | CATATG | 1 cut(s) | 587 |
| NdeII | GATC | 8 cut(s) | 41, 747, 1003, 1089, 1362, 1861, 1893, 2336 |
| NgoMIV | GCCGGC | 1 cut(s) | 2152 |
| NheI | GCTAGC | 1 cut(s) | 247 |
| NlaIII | CATG | 6 cut(s) | 321, 332, 772, 1022, 1078, 1204 |
| NmeAIII | GCCGAG | 1 cut(s) | 505 |
| NmuCI | GTSAC | 3 cut(s) | 1055, 1226, 2351 |
| NruI | TCGCGA | 1 cut(s) | 909 |
| PalAI | GGCGCGCC | 1 cut(s) | 1373 |
| PauI | GCGCGC | 1 cut(s) | 1373 |
| PceI | AGGCCT | 1 cut(s) | 452 |
| PciSI | GCTCTTC | 1 cut(s) | 234 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 184, 339 |
| PdiI | GCCGGC | 1 cut(s) | 2154 |
| PfeI | GAWTC | 5 cut(s) | 35, 457, 764, 952, 2231 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 159, 541, 588, 2103 |
| PfoI | TCCNGGA | 2 cut(s) | 1036, 1101 |
| PleI | GAGTC | 7 cut(s) | 319, 898, 1009, 1448, 1915, 2008, 2236 |
| PluTI | GGCGCC | 1 cut(s) | 2097 |
| PpsI | GAGTC | 7 cut(s) | 319, 898, 1009, 1448, 1915, 2008, 2236 |
| Ppu21I | YACGTR | 3 cut(s) | 685, 712, 932 |
| PpuMI | RGGWCCY | 2 cut(s) | 786, 1804 |
| Psp5II | RGGWCCY | 2 cut(s) | 786, 1804 |
| Psp6I | CCWGG | 6 cut(s) | 729, 1101, 1539, 1710, 1806, 1959 |
| PspFI | CCCAGC | 6 cut(s) | 884, 987, 1336, 1525, 2235, 2270 |
| PspGI | CCWGG | 6 cut(s) | 729, 1101, 1539, 1710, 1806, 1959 |
| PspPI | GGNCC | 9 cut(s) | 641, 786, 828, 1078, 1438, 1684, 1708, 1732, 1804 |
| PspPPI | RGGWCCY | 2 cut(s) | 786, 1804 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1460, 1492 |
| PstI | CTGCAG | 1 cut(s) | 2085 |
| PstNI | CAGNNNCTG | 1 cut(s) | 508 |
| PsuI | RGATCY | 3 cut(s) | 41, 1893, 2336 |
| PteI | GCGCGC | 1 cut(s) | 1373 |
| PvuII | CAGCTG | 1 cut(s) | 1525 |
| RruI | TCGCGA | 1 cut(s) | 909 |
| RsaI | GTAC | 7 cut(s) | 181, 525, 683, 1115, 1469, 1554, 2305 |
| RsaNI | GTAC | 7 cut(s) | 180, 524, 682, 1114, 1468, 1553, 2304 |
| SacII | CCGCGG | 2 cut(s) | 1777, 2335 |
| SalI | GTCGAC | 1 cut(s) | 1558 |
| SapI | GCTCTTC | 1 cut(s) | 234 |
| SaqAI | TTAA | 2 cut(s) | 858, 1932 |
| Sau3AI | GATC | 8 cut(s) | 41, 747, 1003, 1089, 1362, 1861, 1893, 2336 |
| Sau96I | GGNCC | 9 cut(s) | 641, 786, 828, 1078, 1438, 1684, 1708, 1732, 1804 |
| SchI | GAGTC | 7 cut(s) | 320, 898, 1009, 1448, 1916, 2009, 2236 |
| SduI | GDGCHC | 5 cut(s) | 486, 711, 1602, 2062, 2191 |
| SfaNI | GCATC | 7 cut(s) | 295, 588, 1750, 1759, 2067, 2134, 2377 |
| SfcI | CTRYAG | 1 cut(s) | 2081 |
| SfoI | GGCGCC | 1 cut(s) | 2095 |
| Sfr303I | CCGCGG | 2 cut(s) | 1777, 2335 |
| SgrBI | CCGCGG | 2 cut(s) | 1777, 2335 |
| SgsI | GGCGCGCC | 1 cut(s) | 1373 |
| SinI | GGWCC | 6 cut(s) | 641, 786, 828, 1078, 1732, 1804 |
| SmaI | CCCGGG | 2 cut(s) | 1652, 2294 |
| SmlI | CTYRAG | 1 cut(s) | 718 |
| SmoI | CTYRAG | 1 cut(s) | 718 |
| Sse9I | AATT | 4 cut(s) | 537, 674, 1816, 1823 |
| SseBI | AGGCCT | 1 cut(s) | 452 |
| SspDI | GGCGCC | 1 cut(s) | 2093 |
| SspMI | CTAG | 9 cut(s) | 122, 131, 201, 248, 984, 1451, 1917, 2063, 2309 |
| StuI | AGGCCT | 1 cut(s) | 452 |
| StyI | CCWWGG | 4 cut(s) | 694, 937, 1074, 1407 |
| TaiI | ACGT | 7 cut(s) | 12, 168, 687, 714, 934, 1425, 1731 |
| TaqI | TCGA | 4 cut(s) | 455, 750, 1092, 1559 |
| TaqII | GACCGA | 1 cut(s) | 1749 |
| TasI | AATT | 4 cut(s) | 537, 674, 1816, 1823 |
| TfiI | GAWTC | 5 cut(s) | 35, 457, 764, 952, 2231 |
| Tru1I | TTAA | 2 cut(s) | 858, 1932 |
| Tru9I | TTAA | 2 cut(s) | 858, 1932 |
| TscAI | CASTG | 6 cut(s) | 34, 123, 274, 1335, 1372, 1770 |
| TseFI | GTSAC | 3 cut(s) | 1055, 1226, 2351 |
| Tsp45I | GTSAC | 3 cut(s) | 1055, 1226, 2351 |
| TspGWI | ACGGA | 3 cut(s) | 84, 488, 2240 |
| TspMI | CCCGGG | 2 cut(s) | 1650, 2292 |
| TspRI | CASTG | 6 cut(s) | 34, 123, 274, 1335, 1372, 1770 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 159, 541, 588, 2103 |
| VpaK11BI | GGWCC | 6 cut(s) | 641, 786, 828, 1078, 1732, 1804 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1745 |
| XapI | RAATTY | 1 cut(s) | 537 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1217 |
| XmaI | CCCGGG | 2 cut(s) | 1650, 2292 |
| XmiI | GTMKAC | 1 cut(s) | 1559 |
| XspI | CTAG | 9 cut(s) | 122, 131, 201, 248, 984, 1451, 1917, 2063, 2309 |
| ZraI | GACGTC | 1 cut(s) | 10 |