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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 631 |
| AccB1I | GGYRCC | 3 cut(s) | 575, 611, 707 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 621, 814 |
| AccBSI | CCGCTC | 2 cut(s) | 319, 331 |
| AccII | CGCG | 1 cut(s) | 498 |
| AclWI | GGATC | 2 cut(s) | 406, 865 |
| AcoI | YGGCCR | 4 cut(s) | 75, 303, 387, 582 |
| AcuI | CTGAAG | 4 cut(s) | 264, 401, 918, 933 |
| AcyI | GRCGYC | 2 cut(s) | 612, 632 |
| AfaI | GTAC | 2 cut(s) | 524, 826 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 840 |
| AjiI | CACGTC | 1 cut(s) | 61 |
| AjnI | CCWGG | 4 cut(s) | 228, 324, 579, 813 |
| AleI | CACNNNNGTG | 1 cut(s) | 480 |
| AluBI | AGCT | 2 cut(s) | 656, 714 |
| AluI | AGCT | 2 cut(s) | 656, 714 |
| Alw21I | GWGCWC | 1 cut(s) | 186 |
| Alw26I | GTCTC | 1 cut(s) | 827 |
| AlwI | GGATC | 2 cut(s) | 406, 865 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 107, 896 |
| Ama87I | CYCGRG | 3 cut(s) | 168, 715, 838 |
| ApaI | GGGCCC | 1 cut(s) | 25 |
| ApeKI | GCWGC | 7 cut(s) | 101, 133, 529, 598, 601, 649, 674 |
| AspLEI | GCGC | 3 cut(s) | 500, 614, 737 |
| AspS9I | GGNCC | 6 cut(s) | 21, 22, 226, 322, 689, 805 |
| AsuHPI | GGTGA | 1 cut(s) | 476 |
| AvaI | CYCGRG | 3 cut(s) | 168, 715, 838 |
| AvaII | GGWCC | 1 cut(s) | 322 |
| BaeGI | GKGCMC | 2 cut(s) | 25, 580 |
| BalI | TGGCCA | 1 cut(s) | 584 |
| BanI | GGYRCC | 3 cut(s) | 575, 611, 707 |
| BanII | GRGCYC | 1 cut(s) | 25 |
| BauI | CACGAG | 1 cut(s) | 79 |
| Bbv12I | GWGCWC | 1 cut(s) | 186 |
| BbvCI | CCTCAGC | 2 cut(s) | 444, 486 |
| BbvI | GCAGC | 7 cut(s) | 113, 120, 541, 585, 613, 661, 686 |
| BccI | CCATC | 3 cut(s) | 512, 698, 815 |
| BceAI | ACGGC | 1 cut(s) | 290 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 260, 294 |
| BciT130I | CCWGG | 4 cut(s) | 230, 326, 581, 815 |
| BcoDI | GTCTC | 1 cut(s) | 827 |
| BfaI | CTAG | 1 cut(s) | 89 |
| BfmI | CTRYAG | 1 cut(s) | 599 |
| BfoI | RGCGCY | 2 cut(s) | 615, 738 |
| BfuAI | ACCTGC | 1 cut(s) | 631 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 440 |
| Bme1390I | CCNGG | 4 cut(s) | 230, 326, 581, 815 |
| Bme18I | GGWCC | 1 cut(s) | 322 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 840 |
| BmeT110I | CYCGRG | 3 cut(s) | 168, 715, 838 |
| BmgBI | CACGTC | 1 cut(s) | 61 |
| BmgT120I | GGNCC | 6 cut(s) | 21, 22, 226, 322, 689, 805 |
| BmiI | GGNNCC | 9 cut(s) | 22, 23, 51, 323, 494, 577, 613, 691, 709 |
| BmrFI | CCNGG | 4 cut(s) | 230, 326, 581, 815 |
| BmrI | ACTGGG | 2 cut(s) | 631, 766 |
| BmsI | GCATC | 5 cut(s) | 164, 268, 277, 652, 898 |
| BmuI | ACTGGG | 2 cut(s) | 631, 766 |
| BpmI | CTGGAG | 1 cut(s) | 347 |
| Bpu10I | CCTNAGC | 3 cut(s) | 444, 486, 657 |
| BsaHI | GRCGYC | 2 cut(s) | 612, 632 |
| BsaI | GGTCTC | 1 cut(s) | 827 |
| BsaJI | CCNNGG | 7 cut(s) | 6, 167, 228, 393, 579, 813, 853 |
| Bse118I | RCCGGY | 2 cut(s) | 532, 572 |
| Bse1I | ACTGG | 2 cut(s) | 626, 772 |
| BseBI | CCWGG | 4 cut(s) | 230, 326, 581, 815 |
| BseDI | CCNNGG | 7 cut(s) | 6, 167, 228, 393, 579, 813, 853 |
| BseGI | GGATG | 3 cut(s) | 292, 667, 754 |
| BseMII | CTCAG | 4 cut(s) | 435, 470, 477, 710 |
| BseNI | ACTGG | 2 cut(s) | 626, 772 |
| BseRI | GAGGAG | 1 cut(s) | 206 |
| BseSI | GKGCMC | 2 cut(s) | 25, 580 |
| BseXI | GCAGC | 7 cut(s) | 113, 120, 541, 585, 613, 661, 686 |
| BseYI | CCCAGC | 2 cut(s) | 756, 791 |
| BsgI | GTGCAG | 1 cut(s) | 119 |
| Bsh1236I | CGCG | 1 cut(s) | 498 |
| BshNI | GGYRCC | 3 cut(s) | 575, 611, 707 |
| BsiHKAI | GWGCWC | 1 cut(s) | 186 |
| BsiHKCI | CYCGRG | 3 cut(s) | 168, 715, 838 |
| BsiSI | CCGG | 2 cut(s) | 533, 573 |
| BslFI | GGGAC | 4 cut(s) | 227, 335, 352, 769 |
| BsmAI | GTCTC | 1 cut(s) | 827 |
| BsmFI | GGGAC | 4 cut(s) | 227, 335, 352, 769 |
| Bso31I | GGTCTC | 1 cut(s) | 827 |
| BsoBI | CYCGRG | 3 cut(s) | 168, 715, 838 |
| Bsp120I | GGGCCC | 1 cut(s) | 21 |
| Bsp1286I | GDGCHC | 3 cut(s) | 25, 186, 580 |
| Bsp143I | GATC | 5 cut(s) | 12, 337, 379, 411, 857 |
| BspCNI | CTCAG | 4 cut(s) | 436, 471, 478, 709 |
| BspFNI | CGCG | 1 cut(s) | 498 |
| BspLI | GGNNCC | 9 cut(s) | 22, 23, 51, 323, 494, 577, 613, 691, 709 |
| BspMAI | CTGCAG | 1 cut(s) | 603 |
| BspMI | ACCTGC | 1 cut(s) | 631 |
| BspPI | GGATC | 2 cut(s) | 406, 865 |
| BspT107I | GGYRCC | 3 cut(s) | 575, 611, 707 |
| BspTNI | GGTCTC | 1 cut(s) | 827 |
| BsrBI | CCGCTC | 2 cut(s) | 319, 331 |
| BsrFI | RCCGGY | 2 cut(s) | 532, 572 |
| BsrI | ACTGG | 2 cut(s) | 626, 772 |
| BssAI | RCCGGY | 2 cut(s) | 532, 572 |
| BssECI | CCNNGG | 7 cut(s) | 6, 167, 228, 393, 579, 813, 853 |
| BssMI | GATC | 5 cut(s) | 12, 337, 379, 411, 857 |
| BssNI | GRCGYC | 2 cut(s) | 612, 632 |
| BssSI | CACGAG | 1 cut(s) | 79 |
| BssT1I | CCWWGG | 1 cut(s) | 393 |
| Bst2BI | CACGAG | 1 cut(s) | 79 |
| Bst2UI | CCWGG | 4 cut(s) | 230, 326, 581, 815 |
| Bst4CI | ACNGT | 2 cut(s) | 275, 456 |
| BstACI | GRCGYC | 2 cut(s) | 612, 632 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 107, 287, 646 |
| BstC8I | GCNNGC | 9 cut(s) | 25, 29, 292, 534, 654, 712, 739, 805, 891 |
| BstDEI | CTNAG | 6 cut(s) | 264, 444, 479, 486, 657, 696 |
| BstDSI | CCRYGG | 2 cut(s) | 6, 853 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 263 |
| BstF5I | GGATG | 3 cut(s) | 292, 667, 754 |
| BstFNI | CGCG | 1 cut(s) | 498 |
| BstH2I | RGCGCY | 2 cut(s) | 615, 738 |
| BstHHI | GCGC | 3 cut(s) | 500, 614, 737 |
| BstKTI | GATC | 5 cut(s) | 15, 340, 382, 414, 860 |
| BstMAI | GTCTC | 1 cut(s) | 827 |
| BstMBI | GATC | 5 cut(s) | 12, 337, 379, 411, 857 |
| BstNI | CCWGG | 4 cut(s) | 230, 326, 581, 815 |
| BstSCI | CCNGG | 4 cut(s) | 228, 324, 579, 813 |
| BstSFI | CTRYAG | 1 cut(s) | 599 |
| BstSLI | GKGCMC | 2 cut(s) | 25, 580 |
| BstUI | CGCG | 1 cut(s) | 498 |
| BstV1I | GCAGC | 7 cut(s) | 113, 120, 541, 585, 613, 661, 686 |
| BstX2I | RGATCY | 2 cut(s) | 411, 857 |
| BstYI | RGATCY | 2 cut(s) | 411, 857 |
| BtgI | CCRYGG | 2 cut(s) | 6, 853 |
| BtgZI | GCGATG | 1 cut(s) | 490 |
| BtrI | CACGTC | 1 cut(s) | 61 |
| BtsCI | GGATG | 3 cut(s) | 292, 667, 754 |
| BtsI | GCAGTG | 2 cut(s) | 105, 288 |
| BtsIMutI | CAGTG | 2 cut(s) | 105, 288 |
| BveI | ACCTGC | 1 cut(s) | 631 |
| Cac8I | GCNNGC | 9 cut(s) | 25, 29, 292, 534, 654, 712, 739, 805, 891 |
| CaiI | CAGNNNCTG | 2 cut(s) | 107, 896 |
| CfoI | GCGC | 3 cut(s) | 500, 614, 737 |
| Cfr10I | RCCGGY | 2 cut(s) | 532, 572 |
| Cfr13I | GGNCC | 6 cut(s) | 21, 22, 226, 322, 689, 805 |
| CseI | GACGC | 1 cut(s) | 621 |
| Csp6I | GTAC | 2 cut(s) | 523, 825 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 94, 129 |
| CviAII | CATG | 1 cut(s) | 646 |
| CviQI | GTAC | 2 cut(s) | 523, 825 |
| DdeI | CTNAG | 6 cut(s) | 264, 444, 479, 486, 657, 696 |
| DinI | GGCGCC | 1 cut(s) | 613 |
| DpnI | GATC | 5 cut(s) | 14, 339, 381, 413, 859 |
| DpnII | GATC | 5 cut(s) | 12, 337, 379, 411, 857 |
| DriI | GACNNNNNGTC | 1 cut(s) | 840 |
| EaeI | YGGCCR | 4 cut(s) | 75, 303, 387, 582 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 840 |
| EciI | GGCGGA | 1 cut(s) | 551 |
| Eco130I | CCWWGG | 1 cut(s) | 393 |
| Eco24I | GRGCYC | 1 cut(s) | 25 |
| Eco31I | GGTCTC | 1 cut(s) | 827 |
| Eco47I | GGWCC | 1 cut(s) | 322 |
| Eco57I | CTGAAG | 4 cut(s) | 264, 401, 918, 933 |
| Eco88I | CYCGRG | 3 cut(s) | 168, 715, 838 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 263 |
| EcoO109I | RGGNCCY | 2 cut(s) | 21, 322 |
| EcoRII | CCWGG | 4 cut(s) | 228, 324, 579, 813 |
| EcoT14I | CCWWGG | 1 cut(s) | 393 |
| EcoT38I | GRGCYC | 1 cut(s) | 25 |
| EgeI | GGCGCC | 1 cut(s) | 613 |
| EheI | GGCGCC | 1 cut(s) | 613 |
| ErhI | CCWWGG | 1 cut(s) | 393 |
| FaeI | CATG | 1 cut(s) | 649 |
| FaiI | YATR | 5 cut(s) | 143, 365, 543, 647, 810 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 721, 753 |
| FaqI | GGGAC | 4 cut(s) | 227, 335, 352, 769 |
| FatI | CATG | 1 cut(s) | 645 |
| FauI | CCCGC | 5 cut(s) | 32, 312, 414, 716, 796 |
| FokI | GGATG | 3 cut(s) | 299, 674, 761 |
| FriOI | GRGCYC | 1 cut(s) | 25 |
| FspBI | CTAG | 1 cut(s) | 89 |
| GlaI | GCGC | 3 cut(s) | 499, 613, 736 |
| GsaI | CCCAGC | 2 cut(s) | 760, 795 |
| GsuI | CTGGAG | 1 cut(s) | 347 |
| HaeII | RGCGCY | 2 cut(s) | 615, 738 |
| HapII | CCGG | 2 cut(s) | 533, 573 |
| HgaI | GACGC | 1 cut(s) | 621 |
| HhaI | GCGC | 3 cut(s) | 500, 614, 737 |
| Hin1I | GRCGYC | 2 cut(s) | 612, 632 |
| Hin1II | CATG | 1 cut(s) | 649 |
| Hin6I | GCGC | 3 cut(s) | 498, 612, 735 |
| HinP1I | GCGC | 3 cut(s) | 498, 612, 735 |
| HincII | GTYRAC | 2 cut(s) | 555, 636 |
| HindII | GTYRAC | 2 cut(s) | 555, 636 |
| HinfI | GANTC | 6 cut(s) | 92, 425, 518, 752, 763, 841 |
| HpaII | CCGG | 2 cut(s) | 533, 573 |
| HphI | GGTGA | 1 cut(s) | 476 |
| Hpy166II | GTNNAC | 2 cut(s) | 555, 636 |
| Hpy188I | TCNGA | 1 cut(s) | 778 |
| Hpy8I | GTNNAC | 2 cut(s) | 555, 636 |
| Hpy99I | CGWCG | 1 cut(s) | 673 |
| HpyAV | CCTTC | 7 cut(s) | 31, 397, 425, 541, 562, 893, 908 |
| HpyCH4III | ACNGT | 2 cut(s) | 275, 456 |
| HpyCH4IV | ACGT | 1 cut(s) | 60 |
| HpyCH4V | TGCA | 7 cut(s) | 110, 136, 208, 281, 376, 601, 649 |
| HpyF3I | CTNAG | 6 cut(s) | 264, 444, 479, 486, 657, 696 |
| HpySE526I | ACGT | 1 cut(s) | 60 |
| Hsp92I | GRCGYC | 2 cut(s) | 612, 632 |
| Hsp92II | CATG | 1 cut(s) | 649 |
| HspAI | GCGC | 3 cut(s) | 498, 612, 735 |
| KasI | GGCGCC | 1 cut(s) | 611 |
| KroI | GCCGGC | 1 cut(s) | 532 |
| KroNI | GCCGGC | 1 cut(s) | 534 |
| Kzo9I | GATC | 5 cut(s) | 12, 337, 379, 411, 857 |
| LmnI | GCTCC | 4 cut(s) | 181, 328, 492, 670 |
| Lsp1109I | GCAGC | 7 cut(s) | 113, 120, 541, 585, 613, 661, 686 |
| LweI | GCATC | 5 cut(s) | 164, 268, 277, 652, 898 |
| MaeI | CTAG | 1 cut(s) | 89 |
| MaeII | ACGT | 1 cut(s) | 60 |
| MalI | GATC | 5 cut(s) | 14, 339, 381, 413, 859 |
| MbiI | CCGCTC | 2 cut(s) | 319, 331 |
| MboI | GATC | 5 cut(s) | 12, 337, 379, 411, 857 |
| MboII | GAAGA | 1 cut(s) | 46 |
| MflI | RGATCY | 2 cut(s) | 411, 857 |
| MhlI | GDGCHC | 3 cut(s) | 25, 186, 580 |
| MlsI | TGGCCA | 1 cut(s) | 584 |
| MluCI | AATT | 2 cut(s) | 341, 350 |
| MluNI | TGGCCA | 1 cut(s) | 584 |
| Mly113I | GGCGCC | 1 cut(s) | 612 |
| MlyI | GAGTC | 6 cut(s) | 86, 434, 527, 746, 757, 850 |
| MmeI | TCCRAC | 2 cut(s) | 438, 756 |
| Mox20I | TGGCCA | 1 cut(s) | 584 |
| MroNI | GCCGGC | 1 cut(s) | 532 |
| MscI | TGGCCA | 1 cut(s) | 584 |
| MseI | TTAA | 1 cut(s) | 450 |
| MslI | CAYNNNNRTG | 1 cut(s) | 480 |
| Msp20I | TGGCCA | 1 cut(s) | 584 |
| MspA1I | CMGCKG | 4 cut(s) | 294, 421, 512, 760 |
| MspI | CCGG | 2 cut(s) | 533, 573 |
| MspR9I | CCNGG | 4 cut(s) | 230, 326, 581, 815 |
| MvaI | CCWGG | 4 cut(s) | 230, 326, 581, 815 |
| MvnI | CGCG | 1 cut(s) | 498 |
| NaeI | GCCGGC | 1 cut(s) | 534 |
| NarI | GGCGCC | 1 cut(s) | 612 |
| NdeII | GATC | 5 cut(s) | 12, 337, 379, 411, 857 |
| NgoMIV | GCCGGC | 1 cut(s) | 532 |
| NlaIII | CATG | 1 cut(s) | 649 |
| NlaIV | GGNNCC | 9 cut(s) | 22, 23, 51, 323, 494, 577, 613, 691, 709 |
| OliI | CACNNNNGTG | 1 cut(s) | 480 |
| PdiI | GCCGGC | 1 cut(s) | 534 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 621, 814 |
| PleI | GAGTC | 6 cut(s) | 86, 433, 526, 746, 757, 849 |
| PluTI | GGCGCC | 1 cut(s) | 615 |
| PpsI | GAGTC | 6 cut(s) | 86, 433, 526, 746, 757, 849 |
| PpuMI | RGGWCCY | 1 cut(s) | 322 |
| Psp5II | RGGWCCY | 1 cut(s) | 322 |
| Psp6I | CCWGG | 4 cut(s) | 228, 324, 579, 813 |
| PspFI | CCCAGC | 2 cut(s) | 756, 791 |
| PspGI | CCWGG | 4 cut(s) | 228, 324, 579, 813 |
| PspN4I | GGNNCC | 9 cut(s) | 22, 23, 51, 323, 494, 577, 613, 691, 709 |
| PspOMI | GGGCCC | 1 cut(s) | 21 |
| PspPI | GGNCC | 6 cut(s) | 21, 22, 226, 322, 689, 805 |
| PspPPI | RGGWCCY | 1 cut(s) | 322 |
| PstI | CTGCAG | 1 cut(s) | 603 |
| PstNI | CAGNNNCTG | 2 cut(s) | 107, 896 |
| PsuI | RGATCY | 2 cut(s) | 411, 857 |
| RsaI | GTAC | 2 cut(s) | 524, 826 |
| RsaNI | GTAC | 2 cut(s) | 523, 825 |
| RseI | CAYNNNNRTG | 1 cut(s) | 480 |
| SaqAI | TTAA | 1 cut(s) | 450 |
| Sau3AI | GATC | 5 cut(s) | 12, 337, 379, 411, 857 |
| Sau96I | GGNCC | 6 cut(s) | 21, 22, 226, 322, 689, 805 |
| SchI | GAGTC | 6 cut(s) | 86, 434, 527, 746, 757, 850 |
| ScrFI | CCNGG | 4 cut(s) | 230, 326, 581, 815 |
| SduI | GDGCHC | 3 cut(s) | 25, 186, 580 |
| SfaNI | GCATC | 5 cut(s) | 164, 268, 277, 652, 898 |
| SfcI | CTRYAG | 1 cut(s) | 599 |
| SfoI | GGCGCC | 1 cut(s) | 613 |
| SinI | GGWCC | 1 cut(s) | 322 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 480 |
| Sse9I | AATT | 2 cut(s) | 341, 350 |
| SspDI | GGCGCC | 1 cut(s) | 611 |
| SspMI | CTAG | 1 cut(s) | 89 |
| StyD4I | CCNGG | 4 cut(s) | 228, 324, 579, 813 |
| StyI | CCWWGG | 1 cut(s) | 393 |
| TaaI | ACNGT | 2 cut(s) | 275, 456 |
| TaiI | ACGT | 1 cut(s) | 63 |
| TaqI | TCGA | 2 cut(s) | 43, 158 |
| TaqII | GACCGA | 1 cut(s) | 572 |
| TasI | AATT | 2 cut(s) | 341, 350 |
| TauI | GCSGC | 9 cut(s) | 77, 155, 297, 392, 434, 498, 512, 876, 889 |
| Tru1I | TTAA | 1 cut(s) | 450 |
| Tru9I | TTAA | 1 cut(s) | 450 |
| TscAI | CASTG | 2 cut(s) | 112, 288 |
| TseI | GCWGC | 7 cut(s) | 101, 133, 529, 598, 601, 649, 674 |
| TspGWI | ACGGA | 1 cut(s) | 657 |
| TspRI | CASTG | 2 cut(s) | 112, 288 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 621, 814 |
| VpaK11BI | GGWCC | 1 cut(s) | 322 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 263 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 298, 511 |
| XspI | CTAG | 1 cut(s) | 89 |