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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 865 |
| Acc36I | ACCTGC | 1 cut(s) | 429 |
| AccB1I | GGYRCC | 3 cut(s) | 970, 1544, 1757 |
| AccBSI | CCGCTC | 4 cut(s) | 299, 721, 1033, 1315 |
| AccI | GTMKAC | 1 cut(s) | 417 |
| AccII | CGCG | 5 cut(s) | 339, 465, 1227, 1301, 1817 |
| AclWI | GGATC | 2 cut(s) | 356, 690 |
| AcoI | YGGCCR | 5 cut(s) | 672, 702, 1242, 1374, 1437 |
| AcsI | RAATTY | 1 cut(s) | 505 |
| AcuI | CTGAAG | 1 cut(s) | 1553 |
| AcvI | CACGTG | 1 cut(s) | 1723 |
| AcyI | GRCGYC | 3 cut(s) | 971, 1088, 1565 |
| AfaI | GTAC | 6 cut(s) | 98, 233, 311, 524, 1429, 1639 |
| AfeI | AGCGCT | 1 cut(s) | 697 |
| AgeI | ACCGGT | 1 cut(s) | 398 |
| AgsI | TTSAA | 4 cut(s) | 761, 1451, 1459, 1832 |
| AhdI | GACNNNNNGTC | 3 cut(s) | 184, 1680, 1773 |
| AjiI | CACGTC | 2 cut(s) | 1276, 1579 |
| AjnI | CCWGG | 3 cut(s) | 785, 933, 1257 |
| AluBI | AGCT | 6 cut(s) | 160, 1117, 1339, 1418, 1631, 1784 |
| AluI | AGCT | 6 cut(s) | 160, 1117, 1339, 1418, 1631, 1784 |
| Alw21I | GWGCWC | 2 cut(s) | 1119, 1275 |
| Alw26I | GTCTC | 9 cut(s) | 465, 560, 627, 873, 1142, 1162, 1282, 1601, 1760 |
| AlwI | GGATC | 2 cut(s) | 356, 690 |
| Ama87I | CYCGRG | 5 cut(s) | 563, 1101, 1512, 1746, 1785 |
| Aor51HI | AGCGCT | 1 cut(s) | 697 |
| ApaI | GGGCCC | 2 cut(s) | 913, 1513 |
| ApoI | RAATTY | 1 cut(s) | 505 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1028, 1060 |
| AsiGI | ACCGGT | 1 cut(s) | 398 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 75 |
| AsuHPI | GGTGA | 4 cut(s) | 455, 613, 644, 1409 |
| AsuNHI | GCTAGC | 1 cut(s) | 535 |
| AvaI | CYCGRG | 5 cut(s) | 563, 1101, 1512, 1746, 1785 |
| AvaII | GGWCC | 8 cut(s) | 201, 487, 663, 743, 816, 1255, 1682, 1791 |
| BaeGI | GKGCMC | 2 cut(s) | 913, 1513 |
| BanI | GGYRCC | 3 cut(s) | 970, 1544, 1757 |
| BanII | GRGCYC | 4 cut(s) | 584, 913, 1119, 1513 |
| BbrPI | CACGTG | 1 cut(s) | 1723 |
| BbsI | GAAGAC | 1 cut(s) | 1487 |
| Bbv12I | GWGCWC | 2 cut(s) | 1119, 1275 |
| BbvCI | CCTCAGC | 1 cut(s) | 1419 |
| BccI | CCATC | 4 cut(s) | 478, 632, 1253, 1366 |
| BceAI | ACGGC | 6 cut(s) | 5, 687, 876, 962, 1430, 1771 |
| BciT130I | CCWGG | 3 cut(s) | 787, 935, 1259 |
| BcoDI | GTCTC | 9 cut(s) | 465, 560, 627, 873, 1142, 1162, 1282, 1601, 1760 |
| BfaI | CTAG | 1 cut(s) | 536 |
| BfmI | CTRYAG | 3 cut(s) | 552, 1307, 1632 |
| BfoI | RGCGCY | 7 cut(s) | 109, 155, 578, 699, 842, 856, 974 |
| BfuAI | ACCTGC | 1 cut(s) | 429 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 935 |
| BlpI | GCTNAGC | 1 cut(s) | 578 |
| Bme18I | GGWCC | 8 cut(s) | 201, 487, 663, 743, 816, 1255, 1682, 1791 |
| BmeRI | GACNNNNNGTC | 3 cut(s) | 184, 1680, 1773 |
| BmeT110I | CYCGRG | 5 cut(s) | 563, 1101, 1512, 1746, 1785 |
| BmgBI | CACGTC | 2 cut(s) | 1276, 1579 |
| BmrI | ACTGGG | 1 cut(s) | 1767 |
| BmsI | GCATC | 3 cut(s) | 594, 600, 714 |
| BmtI | GCTAGC | 1 cut(s) | 539 |
| BmuI | ACTGGG | 1 cut(s) | 1767 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1613 |
| BpiI | GAAGAC | 1 cut(s) | 1487 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1022, 1054, 1262, 1294 |
| BpmI | CTGGAG | 4 cut(s) | 863, 1124, 1280, 1756 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1118, 1419 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 578 |
| BpuEI | CTTGAG | 1 cut(s) | 154 |
| BsaAI | YACGTR | 2 cut(s) | 100, 1723 |
| BsaHI | GRCGYC | 3 cut(s) | 971, 1088, 1565 |
| BsaI | GGTCTC | 3 cut(s) | 873, 1142, 1760 |
| BsaWI | WCCGGW | 2 cut(s) | 398, 595 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 506, 536, 879, 909, 1169, 1199 |
| Bse118I | RCCGGY | 5 cut(s) | 141, 398, 674, 763, 1585 |
| Bse1I | ACTGG | 5 cut(s) | 197, 619, 800, 1176, 1773 |
| BseBI | CCWGG | 3 cut(s) | 787, 935, 1259 |
| BseGI | GGATG | 5 cut(s) | 643, 729, 1245, 1377, 1669 |
| BseMII | CTCAG | 5 cut(s) | 270, 569, 1132, 1403, 1410 |
| BseNI | ACTGG | 5 cut(s) | 197, 619, 800, 1176, 1773 |
| BseSI | GKGCMC | 2 cut(s) | 913, 1513 |
| BseX3I | CGGCCG | 3 cut(s) | 672, 702, 1437 |
| BseYI | CCCAGC | 7 cut(s) | 543, 824, 863, 1390, 1627, 1685, 1697 |
| BsgI | GTGCAG | 2 cut(s) | 674, 1370 |
| Bsh1236I | CGCG | 5 cut(s) | 339, 465, 1227, 1301, 1817 |
| Bsh1285I | CGRYCG | 6 cut(s) | 675, 705, 1440, 1590, 1811, 1815 |
| BshNI | GGYRCC | 3 cut(s) | 970, 1544, 1757 |
| BshTI | ACCGGT | 1 cut(s) | 398 |
| BsiEI | CGRYCG | 6 cut(s) | 675, 705, 1440, 1590, 1811, 1815 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1119, 1275 |
| BsiHKCI | CYCGRG | 5 cut(s) | 563, 1101, 1512, 1746, 1785 |
| BslFI | GGGAC | 8 cut(s) | 191, 214, 315, 676, 1049, 1268, 1583, 1668 |
| BsmAI | GTCTC | 9 cut(s) | 465, 560, 627, 873, 1142, 1162, 1282, 1601, 1760 |
| BsmBI | CGTCTC | 2 cut(s) | 560, 1282 |
| BsmFI | GGGAC | 8 cut(s) | 191, 214, 315, 676, 1049, 1268, 1583, 1668 |
| BsmI | GAATGC | 1 cut(s) | 253 |
| Bso31I | GGTCTC | 3 cut(s) | 873, 1142, 1760 |
| BsoBI | CYCGRG | 5 cut(s) | 563, 1101, 1512, 1746, 1785 |
| Bsp120I | GGGCCC | 2 cut(s) | 909, 1509 |
| Bsp1286I | GDGCHC | 5 cut(s) | 584, 913, 1119, 1275, 1513 |
| Bsp143I | GATC | 8 cut(s) | 162, 242, 348, 682, 985, 1296, 1795, 1808 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 578 |
| Bsp68I | TCGCGA | 1 cut(s) | 465 |
| BspCNI | CTCAG | 5 cut(s) | 271, 570, 1131, 1404, 1411 |
| BspFNI | CGCG | 5 cut(s) | 339, 465, 1227, 1301, 1817 |
| BspHI | TCATGA | 1 cut(s) | 1017 |
| BspMAI | CTGCAG | 1 cut(s) | 1311 |
| BspMI | ACCTGC | 1 cut(s) | 429 |
| BspOI | GCTAGC | 1 cut(s) | 539 |
| BspPI | GGATC | 2 cut(s) | 356, 690 |
| BspQI | GCTCTTC | 1 cut(s) | 1107 |
| BspT107I | GGYRCC | 3 cut(s) | 970, 1544, 1757 |
| BspTNI | GGTCTC | 3 cut(s) | 873, 1142, 1760 |
| BsrBI | CCGCTC | 4 cut(s) | 299, 721, 1033, 1315 |
| BsrFI | RCCGGY | 5 cut(s) | 141, 398, 674, 763, 1585 |
| BsrI | ACTGG | 5 cut(s) | 197, 619, 800, 1176, 1773 |
| BssAI | RCCGGY | 5 cut(s) | 141, 398, 674, 763, 1585 |
| BssMI | GATC | 8 cut(s) | 162, 242, 348, 682, 985, 1296, 1795, 1808 |
| BssNI | GRCGYC | 3 cut(s) | 971, 1088, 1565 |
| BssT1I | CCWWGG | 1 cut(s) | 118 |
| Bst2UI | CCWGG | 3 cut(s) | 787, 935, 1259 |
| Bst4CI | ACNGT | 5 cut(s) | 64, 224, 553, 652, 958 |
| Bst6I | CTCTTC | 3 cut(s) | 324, 876, 1107 |
| BstACI | GRCGYC | 3 cut(s) | 971, 1088, 1565 |
| BstBAI | YACGTR | 2 cut(s) | 100, 1723 |
| BstDEI | CTNAG | 6 cut(s) | 173, 279, 578, 1118, 1412, 1419 |
| BstDSI | CCRYGG | 2 cut(s) | 63, 1225 |
| BstEII | GGTNACC | 1 cut(s) | 1402 |
| BstF5I | GGATG | 5 cut(s) | 643, 729, 1245, 1377, 1669 |
| BstFNI | CGCG | 5 cut(s) | 339, 465, 1227, 1301, 1817 |
| BstH2I | RGCGCY | 7 cut(s) | 109, 155, 578, 699, 842, 856, 974 |
| BstKTI | GATC | 8 cut(s) | 165, 245, 351, 685, 988, 1299, 1798, 1811 |
| BstMAI | GTCTC | 9 cut(s) | 465, 560, 627, 873, 1142, 1162, 1282, 1601, 1760 |
| BstMBI | GATC | 8 cut(s) | 162, 242, 348, 682, 985, 1296, 1795, 1808 |
| BstMCI | CGRYCG | 6 cut(s) | 675, 705, 1440, 1590, 1811, 1815 |
| BstNI | CCWGG | 3 cut(s) | 787, 935, 1259 |
| BstNSI | RCATGY | 1 cut(s) | 1531 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1613 |
| BstPI | GGTNACC | 1 cut(s) | 1402 |
| BstSFI | CTRYAG | 3 cut(s) | 552, 1307, 1632 |
| BstSLI | GKGCMC | 2 cut(s) | 913, 1513 |
| BstUI | CGCG | 5 cut(s) | 339, 465, 1227, 1301, 1817 |
| BstV2I | GAAGAC | 1 cut(s) | 1487 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 740 |
| BstZI | CGGCCG | 3 cut(s) | 672, 702, 1437 |
| BtgI | CCRYGG | 2 cut(s) | 63, 1225 |
| BtgZI | GCGATG | 1 cut(s) | 497 |
| BtrI | CACGTC | 2 cut(s) | 1276, 1579 |
| BtsCI | GGATG | 5 cut(s) | 643, 729, 1245, 1377, 1669 |
| BtsIMutI | CAGTG | 2 cut(s) | 807, 988 |
| BtuMI | TCGCGA | 1 cut(s) | 465 |
| BveI | ACCTGC | 1 cut(s) | 429 |
| CciI | TCATGA | 1 cut(s) | 1017 |
| CciNI | GCGGCCGC | 1 cut(s) | 1437 |
| Cfr10I | RCCGGY | 5 cut(s) | 141, 398, 674, 763, 1585 |
| Cfr42I | CCGCGG | 1 cut(s) | 1228 |
| Cfr9I | CCCGGG | 3 cut(s) | 1101, 1512, 1746 |
| CseI | GACGC | 4 cut(s) | 476, 577, 1077, 1554 |
| Csp6I | GTAC | 6 cut(s) | 97, 232, 310, 523, 1428, 1638 |
| CspAI | ACCGGT | 1 cut(s) | 398 |
| CviAII | CATG | 4 cut(s) | 520, 740, 1018, 1528 |
| CviQI | GTAC | 6 cut(s) | 97, 232, 310, 523, 1428, 1638 |
| DdeI | CTNAG | 6 cut(s) | 173, 279, 578, 1118, 1412, 1419 |
| DinI | GGCGCC | 1 cut(s) | 972 |
| DpnI | GATC | 8 cut(s) | 164, 244, 350, 684, 987, 1298, 1797, 1810 |
| DpnII | GATC | 8 cut(s) | 162, 242, 348, 682, 985, 1296, 1795, 1808 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 865 |
| DriI | GACNNNNNGTC | 3 cut(s) | 184, 1680, 1773 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 865 |
| EaeI | YGGCCR | 5 cut(s) | 672, 702, 1242, 1374, 1437 |
| EagI | CGGCCG | 3 cut(s) | 672, 702, 1437 |
| Eam1104I | CTCTTC | 3 cut(s) | 324, 876, 1107 |
| Eam1105I | GACNNNNNGTC | 3 cut(s) | 184, 1680, 1773 |
| EarI | CTCTTC | 3 cut(s) | 324, 876, 1107 |
| Ecl136II | GAGCTC | 1 cut(s) | 1117 |
| EclXI | CGGCCG | 3 cut(s) | 672, 702, 1437 |
| Eco130I | CCWWGG | 1 cut(s) | 118 |
| Eco24I | GRGCYC | 4 cut(s) | 584, 913, 1119, 1513 |
| Eco31I | GGTCTC | 3 cut(s) | 873, 1142, 1760 |
| Eco47I | GGWCC | 8 cut(s) | 201, 487, 663, 743, 816, 1255, 1682, 1791 |
| Eco47III | AGCGCT | 1 cut(s) | 697 |
| Eco52I | CGGCCG | 3 cut(s) | 672, 702, 1437 |
| Eco53kI | GAGCTC | 1 cut(s) | 1117 |
| Eco57I | CTGAAG | 1 cut(s) | 1553 |
| Eco72I | CACGTG | 1 cut(s) | 1723 |
| Eco88I | CYCGRG | 5 cut(s) | 563, 1101, 1512, 1746, 1785 |
| Eco91I | GGTNACC | 1 cut(s) | 1402 |
| EcoICRI | GAGCTC | 1 cut(s) | 1117 |
| EcoO109I | RGGNCCY | 7 cut(s) | 56, 201, 663, 909, 1255, 1509, 1682 |
| EcoO65I | GGTNACC | 1 cut(s) | 1402 |
| EcoRII | CCWGG | 3 cut(s) | 785, 933, 1257 |
| EcoT14I | CCWWGG | 1 cut(s) | 118 |
| EcoT38I | GRGCYC | 4 cut(s) | 584, 913, 1119, 1513 |
| EgeI | GGCGCC | 1 cut(s) | 972 |
| EheI | GGCGCC | 1 cut(s) | 972 |
| ErhI | CCWWGG | 1 cut(s) | 118 |
| Esp3I | CGTCTC | 2 cut(s) | 560, 1282 |
| FaeI | CATG | 4 cut(s) | 523, 743, 1021, 1531 |
| FaqI | GGGAC | 8 cut(s) | 191, 214, 315, 676, 1049, 1268, 1583, 1668 |
| FatI | CATG | 4 cut(s) | 519, 739, 1017, 1527 |
| FblI | GTMKAC | 1 cut(s) | 417 |
| FokI | GGATG | 5 cut(s) | 650, 736, 1232, 1384, 1656 |
| FriOI | GRGCYC | 4 cut(s) | 584, 913, 1119, 1513 |
| FspBI | CTAG | 1 cut(s) | 536 |
| GsaI | CCCAGC | 7 cut(s) | 547, 828, 867, 1394, 1631, 1689, 1701 |
| GsuI | CTGGAG | 4 cut(s) | 863, 1124, 1280, 1756 |
| HaeII | RGCGCY | 7 cut(s) | 109, 155, 578, 699, 842, 856, 974 |
| HgaI | GACGC | 4 cut(s) | 476, 577, 1077, 1554 |
| Hin1I | GRCGYC | 3 cut(s) | 971, 1088, 1565 |
| Hin1II | CATG | 4 cut(s) | 523, 743, 1021, 1531 |
| HincII | GTYRAC | 1 cut(s) | 418 |
| HindII | GTYRAC | 1 cut(s) | 418 |
| HinfI | GANTC | 8 cut(s) | 136, 169, 179, 449, 992, 1037, 1220, 1358 |
| HphI | GGTGA | 4 cut(s) | 455, 613, 644, 1409 |
| Hpy166II | GTNNAC | 6 cut(s) | 25, 97, 130, 312, 418, 559 |
| Hpy188I | TCNGA | 8 cut(s) | 280, 589, 687, 1133, 1674, 1713, 1779, 1795 |
| Hpy188III | TCNNGA | 9 cut(s) | 166, 464, 872, 989, 1018, 1141, 1591, 1600, 1735 |
| Hpy8I | GTNNAC | 6 cut(s) | 25, 97, 130, 312, 418, 559 |
| Hpy99I | CGWCG | 8 cut(s) | 224, 470, 814, 958, 1093, 1606, 1678, 1713 |
| HpyAV | CCTTC | 8 cut(s) | 214, 248, 472, 709, 919, 1019, 1534, 1673 |
| HpyCH4III | ACNGT | 5 cut(s) | 64, 224, 553, 652, 958 |
| HpyCH4IV | ACGT | 5 cut(s) | 99, 320, 1275, 1578, 1722 |
| HpyCH4V | TGCA | 3 cut(s) | 655, 1309, 1351 |
| HpyF3I | CTNAG | 6 cut(s) | 173, 279, 578, 1118, 1412, 1419 |
| HpySE526I | ACGT | 5 cut(s) | 99, 320, 1275, 1578, 1722 |
| Hsp92I | GRCGYC | 3 cut(s) | 971, 1088, 1565 |
| Hsp92II | CATG | 4 cut(s) | 523, 743, 1021, 1531 |
| KasI | GGCGCC | 1 cut(s) | 970 |
| KflI | GGGWCCC | 1 cut(s) | 663 |
| KroI | GCCGGC | 2 cut(s) | 141, 674 |
| KroNI | GCCGGC | 2 cut(s) | 143, 676 |
| KspI | CCGCGG | 1 cut(s) | 1228 |
| Kzo9I | GATC | 8 cut(s) | 162, 242, 348, 682, 985, 1296, 1795, 1808 |
| LguI | GCTCTTC | 1 cut(s) | 1107 |
| LmnI | GCTCC | 7 cut(s) | 149, 440, 718, 943, 1030, 1288, 1312 |
| LweI | GCATC | 3 cut(s) | 594, 600, 714 |
| MaeI | CTAG | 1 cut(s) | 536 |
| MaeII | ACGT | 5 cut(s) | 99, 320, 1275, 1578, 1722 |
| MaeIII | GTNAC | 4 cut(s) | 781, 1402, 1566, 1718 |
| MalI | GATC | 8 cut(s) | 164, 244, 350, 684, 987, 1298, 1797, 1810 |
| MbiI | CCGCTC | 4 cut(s) | 299, 721, 1033, 1315 |
| MboI | GATC | 8 cut(s) | 162, 242, 348, 682, 985, 1296, 1795, 1808 |
| MboII | GAAGA | 7 cut(s) | 338, 341, 782, 893, 934, 1124, 1492 |
| MhlI | GDGCHC | 5 cut(s) | 584, 913, 1119, 1275, 1513 |
| MluCI | AATT | 1 cut(s) | 505 |
| Mly113I | GGCGCC | 1 cut(s) | 971 |
| MlyI | GAGTC | 5 cut(s) | 145, 173, 986, 1031, 1367 |
| MmeI | TCCRAC | 5 cut(s) | 310, 1266, 1691, 1697, 1802 |
| MroNI | GCCGGC | 2 cut(s) | 141, 674 |
| MroXI | GAANNNNTTC | 1 cut(s) | 75 |
| MseI | TTAA | 3 cut(s) | 273, 1236, 1476 |
| MslI | CAYNNNNRTG | 2 cut(s) | 630, 1346 |
| MspA1I | CMGCKG | 8 cut(s) | 824, 1227, 1354, 1433, 1442, 1631, 1653, 1857 |
| Mva1269I | GAATGC | 1 cut(s) | 253 |
| MvaI | CCWGG | 3 cut(s) | 787, 935, 1259 |
| MvnI | CGCG | 5 cut(s) | 339, 465, 1227, 1301, 1817 |
| NaeI | GCCGGC | 2 cut(s) | 143, 676 |
| NarI | GGCGCC | 1 cut(s) | 971 |
| NdeII | GATC | 8 cut(s) | 162, 242, 348, 682, 985, 1296, 1795, 1808 |
| NgoMIV | GCCGGC | 2 cut(s) | 141, 674 |
| NheI | GCTAGC | 1 cut(s) | 535 |
| NlaIII | CATG | 4 cut(s) | 523, 743, 1021, 1531 |
| NmeAIII | GCCGAG | 4 cut(s) | 134, 553, 1019, 1027 |
| NmuCI | GTSAC | 3 cut(s) | 781, 1566, 1718 |
| NotI | GCGGCCGC | 1 cut(s) | 1437 |
| NruI | TCGCGA | 1 cut(s) | 465 |
| NspI | RCATGY | 1 cut(s) | 1531 |
| PaeR7I | CTCGAG | 1 cut(s) | 1785 |
| PagI | TCATGA | 1 cut(s) | 1017 |
| PciSI | GCTCTTC | 1 cut(s) | 1107 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1077 |
| PctI | GAATGC | 1 cut(s) | 253 |
| PdiI | GCCGGC | 2 cut(s) | 143, 676 |
| PdmI | GAANNNNTTC | 1 cut(s) | 75 |
| PfeI | GAWTC | 3 cut(s) | 169, 449, 1220 |
| PflFI | GACNNNGTC | 1 cut(s) | 1707 |
| PinAI | ACCGGT | 1 cut(s) | 398 |
| Ple19I | CGATCG | 1 cut(s) | 1811 |
| PleI | GAGTC | 5 cut(s) | 144, 173, 986, 1031, 1366 |
| PluTI | GGCGCC | 1 cut(s) | 974 |
| PmaCI | CACGTG | 1 cut(s) | 1723 |
| PmlI | CACGTG | 1 cut(s) | 1723 |
| PpsI | GAGTC | 5 cut(s) | 144, 173, 986, 1031, 1366 |
| Ppu21I | YACGTR | 2 cut(s) | 100, 1723 |
| PpuMI | RGGWCCY | 4 cut(s) | 201, 663, 1255, 1682 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1613 |
| Psp124BI | GAGCTC | 1 cut(s) | 1119 |
| Psp5II | RGGWCCY | 4 cut(s) | 201, 663, 1255, 1682 |
| Psp6I | CCWGG | 3 cut(s) | 785, 933, 1257 |
| PspCI | CACGTG | 1 cut(s) | 1723 |
| PspEI | GGTNACC | 1 cut(s) | 1402 |
| PspFI | CCCAGC | 7 cut(s) | 543, 824, 863, 1390, 1627, 1685, 1697 |
| PspGI | CCWGG | 3 cut(s) | 785, 933, 1257 |
| PspOMI | GGGCCC | 2 cut(s) | 909, 1509 |
| PspPPI | RGGWCCY | 4 cut(s) | 201, 663, 1255, 1682 |
| PspXI | VCTCGAGB | 1 cut(s) | 1785 |
| PstI | CTGCAG | 1 cut(s) | 1311 |
| PsyI | GACNNNGTC | 1 cut(s) | 1707 |
| PvuI | CGATCG | 1 cut(s) | 1811 |
| PvuII | CAGCTG | 1 cut(s) | 1631 |
| RruI | TCGCGA | 1 cut(s) | 465 |
| RsaI | GTAC | 6 cut(s) | 98, 233, 311, 524, 1429, 1639 |
| RsaNI | GTAC | 6 cut(s) | 97, 232, 310, 523, 1428, 1638 |
| RseI | CAYNNNNRTG | 2 cut(s) | 630, 1346 |
| SacI | GAGCTC | 1 cut(s) | 1119 |
| SacII | CCGCGG | 1 cut(s) | 1228 |
| SalI | GTCGAC | 1 cut(s) | 416 |
| SapI | GCTCTTC | 1 cut(s) | 1107 |
| SaqAI | TTAA | 3 cut(s) | 273, 1236, 1476 |
| Sau3AI | GATC | 8 cut(s) | 162, 242, 348, 682, 985, 1296, 1795, 1808 |
| SchI | GAGTC | 5 cut(s) | 145, 173, 986, 1031, 1367 |
| SduI | GDGCHC | 5 cut(s) | 584, 913, 1119, 1275, 1513 |
| SfaNI | GCATC | 3 cut(s) | 594, 600, 714 |
| SfcI | CTRYAG | 3 cut(s) | 552, 1307, 1632 |
| SfoI | GGCGCC | 1 cut(s) | 972 |
| Sfr274I | CTCGAG | 1 cut(s) | 1785 |
| Sfr303I | CCGCGG | 1 cut(s) | 1228 |
| SgrBI | CCGCGG | 1 cut(s) | 1228 |
| SinI | GGWCC | 8 cut(s) | 201, 487, 663, 743, 816, 1255, 1682, 1791 |
| SlaI | CTCGAG | 1 cut(s) | 1785 |
| SmaI | CCCGGG | 3 cut(s) | 1103, 1514, 1748 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 630, 1346 |
| SmlI | CTYRAG | 2 cut(s) | 133, 1785 |
| SmoI | CTYRAG | 2 cut(s) | 133, 1785 |
| SrfI | GCCCGGGC | 1 cut(s) | 1514 |
| Sse9I | AATT | 1 cut(s) | 505 |
| SspDI | GGCGCC | 1 cut(s) | 970 |
| SspMI | CTAG | 1 cut(s) | 536 |
| SstI | GAGCTC | 1 cut(s) | 1119 |
| StyI | CCWWGG | 1 cut(s) | 118 |
| TaaI | ACNGT | 5 cut(s) | 64, 224, 553, 652, 958 |
| TaiI | ACGT | 5 cut(s) | 102, 323, 1278, 1581, 1725 |
| TaqI | TCGA | 9 cut(s) | 165, 245, 295, 417, 1091, 1182, 1590, 1786, 1845 |
| TaqII | GACCGA | 2 cut(s) | 1505, 1801 |
| TasI | AATT | 1 cut(s) | 505 |
| TfiI | GAWTC | 3 cut(s) | 169, 449, 1220 |
| Tru1I | TTAA | 3 cut(s) | 273, 1236, 1476 |
| Tru9I | TTAA | 3 cut(s) | 273, 1236, 1476 |
| TscAI | CASTG | 2 cut(s) | 807, 988 |
| TseFI | GTSAC | 3 cut(s) | 781, 1566, 1718 |
| Tsp45I | GTSAC | 3 cut(s) | 781, 1566, 1718 |
| TspDTI | ATGAA | 3 cut(s) | 68, 1006, 1397 |
| TspGWI | ACGGA | 2 cut(s) | 1619, 1691 |
| TspMI | CCCGGG | 3 cut(s) | 1101, 1512, 1746 |
| TspRI | CASTG | 2 cut(s) | 807, 988 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1707 |
| VpaK11BI | GGWCC | 8 cut(s) | 201, 487, 663, 743, 816, 1255, 1682, 1791 |
| XapI | RAATTY | 1 cut(s) | 505 |
| XceI | RCATGY | 1 cut(s) | 1531 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 626 |
| XhoI | CTCGAG | 1 cut(s) | 1785 |
| XmaI | CCCGGG | 3 cut(s) | 1101, 1512, 1746 |
| XmiI | GTMKAC | 1 cut(s) | 417 |
| XmnI | GAANNNNTTC | 1 cut(s) | 75 |
| XspI | CTAG | 1 cut(s) | 536 |