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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 529 |
| Acc36I | ACCTGC | 1 cut(s) | 529 |
| Acc65I | GGTACC | 1 cut(s) | 614 |
| AccB1I | GGYRCC | 6 cut(s) | 614, 1123, 1440, 1760, 1796, 1931 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 370, 1806 |
| AccBSI | CCGCTC | 4 cut(s) | 73, 1363, 1438, 1504 |
| AccII | CGCG | 3 cut(s) | 16, 753, 1140 |
| AccIII | TCCGGA | 1 cut(s) | 982 |
| AclWI | GGATC | 7 cut(s) | 280, 651, 664, 915, 974, 1222, 1591 |
| AcoI | YGGCCR | 3 cut(s) | 1166, 1572, 1626 |
| AcuI | CTGAAG | 2 cut(s) | 1376, 1586 |
| AcyI | GRCGYC | 5 cut(s) | 888, 1124, 1340, 1797, 1817 |
| AfaI | GTAC | 7 cut(s) | 512, 616, 647, 944, 1242, 1257, 1867 |
| AflIII | ACRYGT | 2 cut(s) | 169, 414 |
| AgeI | ACCGGT | 1 cut(s) | 213 |
| AgsI | TTSAA | 3 cut(s) | 220, 857, 1711 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1947 |
| AjiI | CACGTC | 1 cut(s) | 1432 |
| AjnI | CCWGG | 9 cut(s) | 558, 882, 950, 1222, 1332, 1413, 1509, 1662, 1919 |
| AluBI | AGCT | 7 cut(s) | 505, 574, 1369, 1402, 1537, 1670, 1841 |
| AluI | AGCT | 7 cut(s) | 505, 574, 1369, 1402, 1537, 1670, 1841 |
| Alw21I | GWGCWC | 1 cut(s) | 1371 |
| Alw26I | GTCTC | 4 cut(s) | 557, 1534, 1557, 1934 |
| AlwI | GGATC | 7 cut(s) | 280, 651, 664, 915, 974, 1222, 1591 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 370, 771 |
| Ama87I | CYCGRG | 2 cut(s) | 1353, 1959 |
| Aor13HI | TCCGGA | 1 cut(s) | 982 |
| ApeKI | GCWGC | 7 cut(s) | 50, 203, 1466, 1558, 1685, 1688, 1910 |
| AsiGI | ACCGGT | 1 cut(s) | 213 |
| Asp718I | GGTACC | 1 cut(s) | 614 |
| AspLEI | GCGC | 7 cut(s) | 258, 522, 723, 997, 1126, 1140, 1799 |
| AspS9I | GGNCC | 9 cut(s) | 4, 151, 188, 470, 796, 1199, 1411, 1507, 1870 |
| AsuC2I | CCSGG | 1 cut(s) | 1135 |
| AsuHPI | GGTGA | 7 cut(s) | 91, 553, 1056, 1174, 1393, 1661, 2021 |
| AsuNHI | GCTAGC | 2 cut(s) | 95, 1423 |
| AvaI | CYCGRG | 2 cut(s) | 1353, 1959 |
| AvaII | GGWCC | 3 cut(s) | 151, 796, 1507 |
| BaeGI | GKGCMC | 3 cut(s) | 307, 1147, 1765 |
| BamHI | GGATCC | 1 cut(s) | 656 |
| BanI | GGYRCC | 6 cut(s) | 614, 1123, 1440, 1760, 1796, 1931 |
| BanII | GRGCYC | 2 cut(s) | 568, 1371 |
| BauI | CACGAG | 3 cut(s) | 735, 846, 1322 |
| BbsI | GAAGAC | 2 cut(s) | 1382, 2019 |
| Bbv12I | GWGCWC | 1 cut(s) | 1371 |
| BbvCI | CCTCAGC | 2 cut(s) | 1208, 1671 |
| BbvI | GCAGC | 7 cut(s) | 37, 190, 1478, 1545, 1672, 1700, 1897 |
| BccI | CCATC | 2 cut(s) | 1922, 2015 |
| BceAI | ACGGC | 7 cut(s) | 191, 648, 836, 1075, 1308, 1481, 1884 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 154, 188 |
| BciT130I | CCWGG | 9 cut(s) | 560, 884, 952, 1224, 1334, 1415, 1511, 1664, 1921 |
| BciVI | GTATCC | 1 cut(s) | 127 |
| BclI | TGATCA | 1 cut(s) | 832 |
| BcnI | CCSGG | 1 cut(s) | 1135 |
| BcoDI | GTCTC | 4 cut(s) | 557, 1534, 1557, 1934 |
| BfaI | CTAG | 4 cut(s) | 96, 506, 1095, 1424 |
| BfmI | CTRYAG | 2 cut(s) | 863, 1686 |
| BfoI | RGCGCY | 4 cut(s) | 523, 998, 1127, 1800 |
| BfuAI | ACCTGC | 1 cut(s) | 529 |
| BfuI | GTATCC | 1 cut(s) | 127 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1625 |
| BlpI | GCTNAGC | 1 cut(s) | 963 |
| Bme18I | GGWCC | 3 cut(s) | 151, 796, 1507 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1947 |
| BmeT110I | CYCGRG | 2 cut(s) | 1353, 1959 |
| BmgBI | CACGTC | 1 cut(s) | 1432 |
| BmgT120I | GGNCC | 9 cut(s) | 4, 151, 188, 470, 796, 1199, 1411, 1507, 1870 |
| BmrI | ACTGGG | 1 cut(s) | 1941 |
| BmsI | GCATC | 5 cut(s) | 31, 1312, 1453, 1462, 1837 |
| BmtI | GCTAGC | 2 cut(s) | 99, 1427 |
| BmuI | ACTGGG | 1 cut(s) | 1941 |
| BpiI | GAAGAC | 2 cut(s) | 1382, 2019 |
| BpmI | CTGGAG | 4 cut(s) | 347, 542, 1532, 1559 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1208, 1671, 1842 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 963 |
| BpuEI | CTTGAG | 2 cut(s) | 568, 1355 |
| BpuMI | CCSGG | 1 cut(s) | 1135 |
| BsaAI | YACGTR | 2 cut(s) | 514, 761 |
| BsaHI | GRCGYC | 5 cut(s) | 888, 1124, 1340, 1797, 1817 |
| BsaWI | WCCGGW | 3 cut(s) | 213, 458, 982 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 30, 60 |
| Bse118I | RCCGGY | 3 cut(s) | 213, 1757, 1855 |
| Bse1I | ACTGG | 4 cut(s) | 817, 996, 1629, 1947 |
| Bse3DI | GCAATG | 2 cut(s) | 198, 1185 |
| BseAI | TCCGGA | 1 cut(s) | 982 |
| BseBI | CCWGG | 9 cut(s) | 560, 884, 952, 1224, 1334, 1415, 1511, 1664, 1921 |
| BseGI | GGATG | 6 cut(s) | 130, 277, 1477, 1852, 1933, 1987 |
| BseMI | GCAATG | 2 cut(s) | 198, 1185 |
| BseMII | CTCAG | 7 cut(s) | 129, 906, 977, 999, 1199, 1662, 1734 |
| BseNI | ACTGG | 4 cut(s) | 817, 996, 1629, 1947 |
| BseRI | GAGGAG | 5 cut(s) | 83, 94, 143, 545, 1391 |
| BseSI | GKGCMC | 3 cut(s) | 307, 1147, 1765 |
| BseXI | GCAGC | 7 cut(s) | 37, 190, 1478, 1545, 1672, 1700, 1897 |
| BseYI | CCCAGC | 1 cut(s) | 1402 |
| BsgI | GTGCAG | 2 cut(s) | 148, 1304 |
| Bsh1236I | CGCG | 3 cut(s) | 16, 753, 1140 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2029 |
| BshNI | GGYRCC | 6 cut(s) | 614, 1123, 1440, 1760, 1796, 1931 |
| BshTI | ACCGGT | 1 cut(s) | 213 |
| BsiEI | CGRYCG | 1 cut(s) | 2029 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1371 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1353, 1959 |
| BsiSI | CCGG | 6 cut(s) | 214, 459, 983, 1135, 1758, 1856 |
| BslFI | GGGAC | 3 cut(s) | 1520, 1876, 1935 |
| BsmAI | GTCTC | 4 cut(s) | 557, 1534, 1557, 1934 |
| BsmFI | GGGAC | 3 cut(s) | 1520, 1876, 1935 |
| BsmI | GAATGC | 1 cut(s) | 1706 |
| BsoBI | CYCGRG | 2 cut(s) | 1353, 1959 |
| Bsp1286I | GDGCHC | 5 cut(s) | 307, 568, 1147, 1371, 1765 |
| Bsp13I | TCCGGA | 1 cut(s) | 982 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 963 |
| Bsp19I | CCATGG | 1 cut(s) | 903 |
| BspCNI | CTCAG | 7 cut(s) | 130, 907, 976, 1000, 1200, 1663, 1735 |
| BspEI | TCCGGA | 1 cut(s) | 982 |
| BspFNI | CGCG | 3 cut(s) | 16, 753, 1140 |
| BspMAI | CTGCAG | 2 cut(s) | 867, 1690 |
| BspMI | ACCTGC | 1 cut(s) | 529 |
| BspOI | GCTAGC | 2 cut(s) | 99, 1427 |
| BspPI | GGATC | 7 cut(s) | 280, 651, 664, 915, 974, 1222, 1591 |
| BspT107I | GGYRCC | 6 cut(s) | 614, 1123, 1440, 1760, 1796, 1931 |
| BsrBI | CCGCTC | 4 cut(s) | 73, 1363, 1438, 1504 |
| BsrDI | GCAATG | 2 cut(s) | 198, 1185 |
| BsrFI | RCCGGY | 3 cut(s) | 213, 1757, 1855 |
| BsrI | ACTGG | 4 cut(s) | 817, 996, 1629, 1947 |
| BssAI | RCCGGY | 3 cut(s) | 213, 1757, 1855 |
| BssNI | GRCGYC | 5 cut(s) | 888, 1124, 1340, 1797, 1817 |
| BssSI | CACGAG | 3 cut(s) | 735, 846, 1322 |
| BssT1I | CCWWGG | 5 cut(s) | 331, 523, 903, 1449, 1578 |
| Bst2BI | CACGAG | 3 cut(s) | 735, 846, 1322 |
| Bst2UI | CCWGG | 9 cut(s) | 560, 884, 952, 1224, 1334, 1415, 1511, 1664, 1921 |
| Bst4CI | ACNGT | 5 cut(s) | 89, 478, 973, 1270, 1460 |
| Bst6I | CTCTTC | 1 cut(s) | 738 |
| BstACI | GRCGYC | 5 cut(s) | 888, 1124, 1340, 1797, 1817 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1472 |
| BstBAI | YACGTR | 2 cut(s) | 514, 761 |
| BstDSI | CCRYGG | 3 cut(s) | 903, 1017, 1477 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 708, 1448 |
| BstF5I | GGATG | 6 cut(s) | 130, 277, 1477, 1852, 1933, 1987 |
| BstFNI | CGCG | 3 cut(s) | 16, 753, 1140 |
| BstH2I | RGCGCY | 4 cut(s) | 523, 998, 1127, 1800 |
| BstHHI | GCGC | 7 cut(s) | 258, 522, 723, 997, 1126, 1140, 1799 |
| BstMAI | GTCTC | 4 cut(s) | 557, 1534, 1557, 1934 |
| BstMCI | CGRYCG | 1 cut(s) | 2029 |
| BstNI | CCWGG | 9 cut(s) | 560, 884, 952, 1224, 1334, 1415, 1511, 1664, 1921 |
| BstNSI | RCATGY | 5 cut(s) | 173, 418, 721, 943, 2003 |
| BstSFI | CTRYAG | 2 cut(s) | 863, 1686 |
| BstSLI | GKGCMC | 3 cut(s) | 307, 1147, 1765 |
| BstUI | CGCG | 3 cut(s) | 16, 753, 1140 |
| BstV1I | GCAGC | 7 cut(s) | 37, 190, 1478, 1545, 1672, 1700, 1897 |
| BstV2I | GAAGAC | 2 cut(s) | 1382, 2019 |
| BstX2I | RGATCY | 2 cut(s) | 656, 1596 |
| BstYI | RGATCY | 2 cut(s) | 656, 1596 |
| BsuI | GTATCC | 1 cut(s) | 127 |
| BtgI | CCRYGG | 3 cut(s) | 903, 1017, 1477 |
| BtrI | CACGTC | 1 cut(s) | 1432 |
| BtsCI | GGATG | 6 cut(s) | 130, 277, 1477, 1852, 1933, 1987 |
| BtsI | GCAGTG | 1 cut(s) | 1953 |
| BtsIMutI | CAGTG | 6 cut(s) | 94, 810, 989, 1610, 1736, 1953 |
| BveI | ACCTGC | 1 cut(s) | 529 |
| CaiI | CAGNNNCTG | 2 cut(s) | 370, 771 |
| CfoI | GCGC | 7 cut(s) | 258, 522, 723, 997, 1126, 1140, 1799 |
| Cfr10I | RCCGGY | 3 cut(s) | 213, 1757, 1855 |
| Cfr13I | GGNCC | 9 cut(s) | 4, 151, 188, 470, 796, 1199, 1411, 1507, 1870 |
| CseI | GACGC | 3 cut(s) | 896, 1329, 1806 |
| Csp6I | GTAC | 7 cut(s) | 511, 615, 646, 943, 1241, 1256, 1866 |
| CspAI | ACCGGT | 1 cut(s) | 213 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 462, 497 |
| CviQI | GTAC | 7 cut(s) | 511, 615, 646, 943, 1241, 1256, 1866 |
| DinI | GGCGCC | 2 cut(s) | 1125, 1798 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1947 |
| EaeI | YGGCCR | 3 cut(s) | 1166, 1572, 1626 |
| Eam1104I | CTCTTC | 1 cut(s) | 738 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1947 |
| EarI | CTCTTC | 1 cut(s) | 738 |
| EciI | GGCGGA | 3 cut(s) | 793, 1842, 1940 |
| Ecl136II | GAGCTC | 1 cut(s) | 1369 |
| Eco130I | CCWWGG | 5 cut(s) | 331, 523, 903, 1449, 1578 |
| Eco147I | AGGCCT | 1 cut(s) | 1222 |
| Eco24I | GRGCYC | 2 cut(s) | 568, 1371 |
| Eco47I | GGWCC | 3 cut(s) | 151, 796, 1507 |
| Eco53kI | GAGCTC | 1 cut(s) | 1369 |
| Eco57I | CTGAAG | 2 cut(s) | 1376, 1586 |
| Eco88I | CYCGRG | 2 cut(s) | 1353, 1959 |
| EcoICRI | GAGCTC | 1 cut(s) | 1369 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 708, 1448 |
| EcoO109I | RGGNCCY | 2 cut(s) | 151, 1507 |
| EcoRII | CCWGG | 9 cut(s) | 558, 882, 950, 1222, 1332, 1413, 1509, 1662, 1919 |
| EcoT14I | CCWWGG | 5 cut(s) | 331, 523, 903, 1449, 1578 |
| EcoT38I | GRGCYC | 2 cut(s) | 568, 1371 |
| EgeI | GGCGCC | 2 cut(s) | 1125, 1798 |
| EheI | GGCGCC | 2 cut(s) | 1125, 1798 |
| ErhI | CCWWGG | 5 cut(s) | 331, 523, 903, 1449, 1578 |
| FaqI | GGGAC | 3 cut(s) | 1520, 1876, 1935 |
| FbaI | TGATCA | 1 cut(s) | 832 |
| FokI | GGATG | 6 cut(s) | 137, 284, 1484, 1859, 1940, 1974 |
| FriOI | GRGCYC | 2 cut(s) | 568, 1371 |
| FspBI | CTAG | 4 cut(s) | 96, 506, 1095, 1424 |
| GlaI | GCGC | 7 cut(s) | 257, 521, 722, 996, 1125, 1139, 1798 |
| GsaI | CCCAGC | 1 cut(s) | 1406 |
| GsuI | CTGGAG | 4 cut(s) | 347, 542, 1532, 1559 |
| HaeII | RGCGCY | 4 cut(s) | 523, 998, 1127, 1800 |
| HapII | CCGG | 6 cut(s) | 214, 459, 983, 1135, 1758, 1856 |
| HgaI | GACGC | 3 cut(s) | 896, 1329, 1806 |
| HhaI | GCGC | 7 cut(s) | 258, 522, 723, 997, 1126, 1140, 1799 |
| Hin1I | GRCGYC | 5 cut(s) | 888, 1124, 1340, 1797, 1817 |
| Hin6I | GCGC | 7 cut(s) | 256, 520, 721, 995, 1124, 1138, 1797 |
| HinP1I | GCGC | 7 cut(s) | 256, 520, 721, 995, 1124, 1138, 1797 |
| HincII | GTYRAC | 2 cut(s) | 211, 1273 |
| HindII | GTYRAC | 2 cut(s) | 211, 1273 |
| HindIII | AAGCTT | 1 cut(s) | 572 |
| HpaII | CCGG | 6 cut(s) | 214, 459, 983, 1135, 1758, 1856 |
| HphI | GGTGA | 7 cut(s) | 91, 553, 1056, 1174, 1393, 1661, 2021 |
| Hpy166II | GTNNAC | 4 cut(s) | 211, 511, 544, 1273 |
| Hpy188I | TCNGA | 9 cut(s) | 109, 694, 710, 767, 1009, 1395, 1885, 1969, 2020 |
| Hpy188III | TCNNGA | 4 cut(s) | 364, 737, 794, 983 |
| Hpy8I | GTNNAC | 4 cut(s) | 211, 511, 544, 1273 |
| Hpy99I | CGWCG | 5 cut(s) | 679, 1061, 1073, 1345, 1996 |
| HpyCH4III | ACNGT | 5 cut(s) | 89, 478, 973, 1270, 1460 |
| HpyCH4IV | ACGT | 5 cut(s) | 513, 677, 760, 1431, 1773 |
| HpyCH4V | TGCA | 8 cut(s) | 165, 313, 865, 1108, 1321, 1466, 1561, 1688 |
| HpySE526I | ACGT | 5 cut(s) | 513, 677, 760, 1431, 1773 |
| Hsp92I | GRCGYC | 5 cut(s) | 888, 1124, 1340, 1797, 1817 |
| HspAI | GCGC | 7 cut(s) | 256, 520, 721, 995, 1124, 1138, 1797 |
| KasI | GGCGCC | 2 cut(s) | 1123, 1796 |
| Kpn2I | TCCGGA | 1 cut(s) | 982 |
| KpnI | GGTACC | 1 cut(s) | 618 |
| KroI | GCCGGC | 1 cut(s) | 1855 |
| KroNI | GCCGGC | 1 cut(s) | 1857 |
| Ksp22I | TGATCA | 1 cut(s) | 832 |
| LmnI | GCTCC | 9 cut(s) | 70, 107, 571, 1366, 1399, 1435, 1540, 1667, 1855 |
| Lsp1109I | GCAGC | 7 cut(s) | 37, 190, 1478, 1545, 1672, 1700, 1897 |
| LweI | GCATC | 5 cut(s) | 31, 1312, 1453, 1462, 1837 |
| MaeI | CTAG | 4 cut(s) | 96, 506, 1095, 1424 |
| MaeII | ACGT | 5 cut(s) | 513, 677, 760, 1431, 1773 |
| MaeIII | GTNAC | 5 cut(s) | 83, 158, 869, 1180, 1381 |
| MbiI | CCGCTC | 4 cut(s) | 73, 1363, 1438, 1504 |
| MboII | GAAGA | 6 cut(s) | 316, 752, 755, 782, 1382, 2024 |
| MfeI | CAATTG | 1 cut(s) | 839 |
| MflI | RGATCY | 2 cut(s) | 656, 1596 |
| MhlI | GDGCHC | 5 cut(s) | 307, 568, 1147, 1371, 1765 |
| MluCI | AATT | 3 cut(s) | 119, 839, 925 |
| Mly113I | GGCGCC | 2 cut(s) | 1124, 1797 |
| MlyI | GAGTC | 8 cut(s) | 149, 559, 727, 838, 1221, 1619, 1936, 2009 |
| MmeI | TCCRAC | 3 cut(s) | 1294, 1623, 1863 |
| MreI | CGCCGGCG | 1 cut(s) | 1855 |
| MroI | TCCGGA | 1 cut(s) | 982 |
| MroNI | GCCGGC | 1 cut(s) | 1855 |
| MseI | TTAA | 2 cut(s) | 687, 1635 |
| MslI | CAYNNNNRTG | 1 cut(s) | 174 |
| MspA1I | CMGCKG | 4 cut(s) | 296, 1207, 1469, 1697 |
| MspI | CCGG | 6 cut(s) | 214, 459, 983, 1135, 1758, 1856 |
| MunI | CAATTG | 1 cut(s) | 839 |
| Mva1269I | GAATGC | 1 cut(s) | 1706 |
| MvaI | CCWGG | 9 cut(s) | 560, 884, 952, 1224, 1334, 1415, 1511, 1664, 1921 |
| MvnI | CGCG | 3 cut(s) | 16, 753, 1140 |
| NaeI | GCCGGC | 1 cut(s) | 1857 |
| NarI | GGCGCC | 2 cut(s) | 1124, 1797 |
| NciI | CCSGG | 1 cut(s) | 1135 |
| NcoI | CCATGG | 1 cut(s) | 903 |
| NgoMIV | GCCGGC | 1 cut(s) | 1855 |
| NheI | GCTAGC | 2 cut(s) | 95, 1423 |
| NmeAIII | GCCGAG | 4 cut(s) | 557, 1262, 1271, 1654 |
| NmuCI | GTSAC | 3 cut(s) | 158, 1180, 1381 |
| NspI | RCATGY | 5 cut(s) | 173, 418, 721, 943, 2003 |
| PaeI | GCATGC | 2 cut(s) | 721, 2003 |
| PaeR7I | CTCGAG | 1 cut(s) | 1959 |
| PaqCI | CACCTGC | 1 cut(s) | 529 |
| PceI | AGGCCT | 1 cut(s) | 1222 |
| PciI | ACATGT | 2 cut(s) | 169, 414 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 440, 757, 1065 |
| PctI | GAATGC | 1 cut(s) | 1706 |
| PdiI | GCCGGC | 1 cut(s) | 1857 |
| PfeI | GAWTC | 3 cut(s) | 367, 593, 781 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 370, 1806 |
| PinAI | ACCGGT | 1 cut(s) | 213 |
| PleI | GAGTC | 8 cut(s) | 148, 558, 727, 838, 1221, 1618, 1936, 2009 |
| PluTI | GGCGCC | 2 cut(s) | 1127, 1800 |
| PpsI | GAGTC | 8 cut(s) | 148, 558, 727, 838, 1221, 1618, 1936, 2009 |
| Ppu21I | YACGTR | 2 cut(s) | 514, 761 |
| PpuMI | RGGWCCY | 2 cut(s) | 151, 1507 |
| PscI | ACATGT | 2 cut(s) | 169, 414 |
| Psp124BI | GAGCTC | 1 cut(s) | 1371 |
| Psp5II | RGGWCCY | 2 cut(s) | 151, 1507 |
| Psp6I | CCWGG | 9 cut(s) | 558, 882, 950, 1222, 1332, 1413, 1509, 1662, 1919 |
| PspFI | CCCAGC | 1 cut(s) | 1402 |
| PspGI | CCWGG | 9 cut(s) | 558, 882, 950, 1222, 1332, 1413, 1509, 1662, 1919 |
| PspPI | GGNCC | 9 cut(s) | 4, 151, 188, 470, 796, 1199, 1411, 1507, 1870 |
| PspPPI | RGGWCCY | 2 cut(s) | 151, 1507 |
| PspXI | VCTCGAGB | 1 cut(s) | 1959 |
| PstI | CTGCAG | 2 cut(s) | 867, 1690 |
| PstNI | CAGNNNCTG | 2 cut(s) | 370, 771 |
| PsuI | RGATCY | 2 cut(s) | 656, 1596 |
| RsaI | GTAC | 7 cut(s) | 512, 616, 647, 944, 1242, 1257, 1867 |
| RsaNI | GTAC | 7 cut(s) | 511, 615, 646, 943, 1241, 1256, 1866 |
| RseI | CAYNNNNRTG | 1 cut(s) | 174 |
| SacI | GAGCTC | 1 cut(s) | 1371 |
| SaqAI | TTAA | 2 cut(s) | 687, 1635 |
| Sau96I | GGNCC | 9 cut(s) | 4, 151, 188, 470, 796, 1199, 1411, 1507, 1870 |
| SchI | GAGTC | 8 cut(s) | 149, 559, 727, 838, 1221, 1619, 1936, 2009 |
| SduI | GDGCHC | 5 cut(s) | 307, 568, 1147, 1371, 1765 |
| SfaNI | GCATC | 5 cut(s) | 31, 1312, 1453, 1462, 1837 |
| SfcI | CTRYAG | 2 cut(s) | 863, 1686 |
| SfoI | GGCGCC | 2 cut(s) | 1125, 1798 |
| Sfr274I | CTCGAG | 1 cut(s) | 1959 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1855 |
| SinI | GGWCC | 3 cut(s) | 151, 796, 1507 |
| SlaI | CTCGAG | 1 cut(s) | 1959 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 174 |
| SmlI | CTYRAG | 3 cut(s) | 547, 1370, 1959 |
| SmoI | CTYRAG | 3 cut(s) | 547, 1370, 1959 |
| SphI | GCATGC | 2 cut(s) | 721, 2003 |
| Sse9I | AATT | 3 cut(s) | 119, 839, 925 |
| SseBI | AGGCCT | 1 cut(s) | 1222 |
| SspDI | GGCGCC | 2 cut(s) | 1123, 1796 |
| SspI | AATATT | 1 cut(s) | 267 |
| SspMI | CTAG | 4 cut(s) | 96, 506, 1095, 1424 |
| SstI | GAGCTC | 1 cut(s) | 1371 |
| StuI | AGGCCT | 1 cut(s) | 1222 |
| StyI | CCWWGG | 5 cut(s) | 331, 523, 903, 1449, 1578 |
| TaaI | ACNGT | 5 cut(s) | 89, 478, 973, 1270, 1460 |
| TaiI | ACGT | 5 cut(s) | 516, 680, 763, 1434, 1776 |
| TaqI | TCGA | 7 cut(s) | 174, 284, 921, 1217, 1343, 1359, 1960 |
| TasI | AATT | 3 cut(s) | 119, 839, 925 |
| TfiI | GAWTC | 3 cut(s) | 367, 593, 781 |
| Tru1I | TTAA | 2 cut(s) | 687, 1635 |
| Tru9I | TTAA | 2 cut(s) | 687, 1635 |
| TscAI | CASTG | 6 cut(s) | 94, 817, 996, 1610, 1743, 1960 |
| TseFI | GTSAC | 3 cut(s) | 158, 1180, 1381 |
| TseI | GCWGC | 7 cut(s) | 50, 203, 1466, 1558, 1685, 1688, 1910 |
| Tsp45I | GTSAC | 3 cut(s) | 158, 1180, 1381 |
| TspDTI | ATGAA | 3 cut(s) | 192, 288, 602 |
| TspGWI | ACGGA | 1 cut(s) | 1980 |
| TspRI | CASTG | 6 cut(s) | 94, 817, 996, 1610, 1743, 1960 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 370, 1806 |
| VpaK11BI | GGWCC | 3 cut(s) | 151, 796, 1507 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 708, 1448 |
| XceI | RCATGY | 5 cut(s) | 173, 418, 721, 943, 2003 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1192 |
| XhoI | CTCGAG | 1 cut(s) | 1959 |
| XspI | CTAG | 4 cut(s) | 96, 506, 1095, 1424 |