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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 219, 923 |
| Acc16I | TGCGCA | 1 cut(s) | 1307 |
| Acc65I | GGTACC | 1 cut(s) | 283 |
| AccB1I | GGYRCC | 4 cut(s) | 283, 379, 992, 1071 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1360, 1816 |
| AccBSI | CCGCTC | 1 cut(s) | 1195 |
| AccI | GTMKAC | 1 cut(s) | 324 |
| AccII | CGCG | 4 cut(s) | 206, 891, 1046, 1523 |
| AcoI | YGGCCR | 3 cut(s) | 294, 1234, 1596 |
| AcsI | RAATTY | 3 cut(s) | 27, 194, 1175 |
| AcuI | CTGAAG | 2 cut(s) | 1192, 1231 |
| AcyI | GRCGYC | 1 cut(s) | 1518 |
| AdeI | CACNNNGTG | 1 cut(s) | 261 |
| AfaI | GTAC | 3 cut(s) | 285, 717, 1556 |
| AgeI | ACCGGT | 1 cut(s) | 506 |
| AgsI | TTSAA | 7 cut(s) | 47, 148, 253, 650, 876, 1144, 1532 |
| AhlI | ACTAGT | 1 cut(s) | 1667 |
| AjnI | CCWGG | 3 cut(s) | 942, 1067, 1353 |
| AleI | CACNNNNGTG | 1 cut(s) | 377 |
| AluBI | AGCT | 8 cut(s) | 161, 267, 910, 938, 1224, 1303, 1336, 1535 |
| AluI | AGCT | 8 cut(s) | 161, 267, 910, 938, 1224, 1303, 1336, 1535 |
| Alw21I | GWGCWC | 1 cut(s) | 1226 |
| Alw26I | GTCTC | 3 cut(s) | 177, 1658, 1795 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1336 |
| Ama87I | CYCGRG | 4 cut(s) | 361, 668, 988, 1871 |
| AoxI | GGCC | 9 cut(s) | 294, 350, 750, 940, 965, 1107, 1227, 1234, 1596 |
| ApoI | RAATTY | 3 cut(s) | 27, 194, 1175 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 191, 223, 1087, 1119 |
| AsiGI | ACCGGT | 1 cut(s) | 506 |
| Asp718I | GGTACC | 1 cut(s) | 283 |
| AspA2I | CCTAGG | 2 cut(s) | 64, 737 |
| AspLEI | GCGC | 4 cut(s) | 372, 893, 898, 1308 |
| AspS9I | GGNCC | 2 cut(s) | 350, 1198 |
| AsuC2I | CCSGG | 8 cut(s) | 376, 586, 621, 669, 670, 814, 1872, 1873 |
| AvaI | CYCGRG | 4 cut(s) | 361, 668, 988, 1871 |
| AvaII | GGWCC | 1 cut(s) | 1198 |
| AvrII | CCTAGG | 2 cut(s) | 64, 737 |
| BalI | TGGCCA | 2 cut(s) | 296, 1236 |
| BanI | GGYRCC | 4 cut(s) | 283, 379, 992, 1071 |
| BanII | GRGCYC | 3 cut(s) | 94, 675, 1226 |
| BauI | CACGAG | 1 cut(s) | 1953 |
| BbsI | GAAGAC | 1 cut(s) | 728 |
| Bbv12I | GWGCWC | 1 cut(s) | 1226 |
| BccI | CCATC | 4 cut(s) | 807, 1019, 1094, 1832 |
| BceAI | ACGGC | 5 cut(s) | 474, 1094, 1274, 1611, 1777 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1297, 1331 |
| BciT130I | CCWGG | 3 cut(s) | 944, 1069, 1355 |
| BciVI | GTATCC | 1 cut(s) | 946 |
| BclI | TGATCA | 1 cut(s) | 1629 |
| BcnI | CCSGG | 8 cut(s) | 376, 586, 621, 669, 670, 814, 1872, 1873 |
| BcoDI | GTCTC | 3 cut(s) | 177, 1658, 1795 |
| BcuI | ACTAGT | 1 cut(s) | 1667 |
| BfaI | CTAG | 7 cut(s) | 9, 65, 498, 533, 738, 1668, 1728 |
| BfmI | CTRYAG | 3 cut(s) | 759, 1016, 1932 |
| BfuI | GTATCC | 1 cut(s) | 946 |
| BglII | AGATCT | 1 cut(s) | 535 |
| BlnI | CCTAGG | 2 cut(s) | 64, 737 |
| Bme18I | GGWCC | 1 cut(s) | 1198 |
| BmeT110I | CYCGRG | 4 cut(s) | 361, 668, 988, 1871 |
| BmgT120I | GGNCC | 2 cut(s) | 350, 1198 |
| BmiI | GGNNCC | 9 cut(s) | 93, 285, 381, 948, 994, 1073, 1137, 1199, 1765 |
| BmrI | ACTGGG | 2 cut(s) | 1645, 1804 |
| BmsI | GCATC | 6 cut(s) | 774, 1111, 1606, 1786, 1918, 1948 |
| BmuI | ACTGGG | 2 cut(s) | 1645, 1804 |
| BpiI | GAAGAC | 1 cut(s) | 728 |
| BpmI | CTGGAG | 1 cut(s) | 965 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1620 |
| BpuEI | CTTGAG | 2 cut(s) | 89, 1926 |
| BpuMI | CCSGG | 8 cut(s) | 376, 586, 621, 669, 670, 814, 1872, 1873 |
| BsaHI | GRCGYC | 1 cut(s) | 1518 |
| BsaWI | WCCGGW | 1 cut(s) | 506 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 470, 500, 1139, 1169 |
| Bse118I | RCCGGY | 3 cut(s) | 506, 1124, 1577 |
| Bse1I | ACTGG | 6 cut(s) | 119, 353, 556, 594, 1640, 1810 |
| BseBI | CCWGG | 3 cut(s) | 944, 1069, 1355 |
| BseGI | GGATG | 3 cut(s) | 81, 1105, 1621 |
| BseMII | CTCAG | 2 cut(s) | 1721, 1908 |
| BseNI | ACTGG | 6 cut(s) | 119, 353, 556, 594, 1640, 1810 |
| BseRI | GAGGAG | 3 cut(s) | 1388, 1472, 1693 |
| BseX3I | CGGCCG | 1 cut(s) | 1596 |
| BseYI | CCCAGC | 1 cut(s) | 1767 |
| BsgI | GTGCAG | 2 cut(s) | 1319, 1451 |
| Bsh1236I | CGCG | 4 cut(s) | 206, 891, 1046, 1523 |
| Bsh1285I | CGRYCG | 3 cut(s) | 291, 1454, 1599 |
| BshFI | GGCC | 9 cut(s) | 296, 352, 752, 942, 967, 1109, 1229, 1236, 1598 |
| BshNI | GGYRCC | 4 cut(s) | 283, 379, 992, 1071 |
| BshTI | ACCGGT | 1 cut(s) | 506 |
| BsiEI | CGRYCG | 3 cut(s) | 291, 1454, 1599 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1226 |
| BsiHKCI | CYCGRG | 4 cut(s) | 361, 668, 988, 1871 |
| BslFI | GGGAC | 3 cut(s) | 400, 781, 1211 |
| BsmAI | GTCTC | 3 cut(s) | 177, 1658, 1795 |
| BsmFI | GGGAC | 3 cut(s) | 400, 781, 1211 |
| BsnI | GGCC | 9 cut(s) | 296, 352, 752, 942, 967, 1109, 1229, 1236, 1598 |
| BsoBI | CYCGRG | 4 cut(s) | 361, 668, 988, 1871 |
| Bsp1286I | GDGCHC | 3 cut(s) | 94, 675, 1226 |
| Bsp1407I | TGTACA | 1 cut(s) | 715 |
| Bsp143I | GATC | 6 cut(s) | 32, 390, 535, 1272, 1451, 1629 |
| Bsp19I | CCATGG | 1 cut(s) | 657 |
| BspANI | GGCC | 9 cut(s) | 296, 352, 752, 942, 967, 1109, 1229, 1236, 1598 |
| BspCNI | CTCAG | 2 cut(s) | 1720, 1907 |
| BspFNI | CGCG | 4 cut(s) | 206, 891, 1046, 1523 |
| BspLI | GGNNCC | 9 cut(s) | 93, 285, 381, 948, 994, 1073, 1137, 1199, 1765 |
| BspMAI | CTGCAG | 3 cut(s) | 763, 1020, 1936 |
| BspT107I | GGYRCC | 4 cut(s) | 283, 379, 992, 1071 |
| BsrBI | CCGCTC | 1 cut(s) | 1195 |
| BsrFI | RCCGGY | 3 cut(s) | 506, 1124, 1577 |
| BsrGI | TGTACA | 1 cut(s) | 715 |
| BsrI | ACTGG | 6 cut(s) | 119, 353, 556, 594, 1640, 1810 |
| BssAI | RCCGGY | 3 cut(s) | 506, 1124, 1577 |
| BssMI | GATC | 6 cut(s) | 32, 390, 535, 1272, 1451, 1629 |
| BssNI | GRCGYC | 1 cut(s) | 1518 |
| BssSI | CACGAG | 1 cut(s) | 1953 |
| BssT1I | CCWWGG | 6 cut(s) | 64, 297, 419, 657, 737, 1407 |
| Bst2BI | CACGAG | 1 cut(s) | 1953 |
| Bst2UI | CCWGG | 3 cut(s) | 944, 1069, 1355 |
| Bst4CI | ACNGT | 4 cut(s) | 292, 448, 823, 1398 |
| Bst6I | CTCTTC | 3 cut(s) | 180, 477, 1211 |
| BstACI | GRCGYC | 1 cut(s) | 1518 |
| BstAUI | TGTACA | 1 cut(s) | 715 |
| BstC8I | GCNNGC | 9 cut(s) | 57, 350, 426, 754, 853, 940, 1126, 1338, 1579 |
| BstDEI | CTNAG | 4 cut(s) | 1620, 1707, 1894, 1962 |
| BstDSI | CCRYGG | 4 cut(s) | 291, 657, 1290, 1521 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 961 |
| BstF5I | GGATG | 3 cut(s) | 81, 1105, 1621 |
| BstFNI | CGCG | 4 cut(s) | 206, 891, 1046, 1523 |
| BstHHI | GCGC | 4 cut(s) | 372, 893, 898, 1308 |
| BstKTI | GATC | 6 cut(s) | 35, 393, 538, 1275, 1454, 1632 |
| BstMAI | GTCTC | 3 cut(s) | 177, 1658, 1795 |
| BstMBI | GATC | 6 cut(s) | 32, 390, 535, 1272, 1451, 1629 |
| BstMCI | CGRYCG | 3 cut(s) | 291, 1454, 1599 |
| BstNI | CCWGG | 3 cut(s) | 944, 1069, 1355 |
| BstNSI | RCATGY | 2 cut(s) | 855, 1060 |
| BstSFI | CTRYAG | 3 cut(s) | 759, 1016, 1932 |
| BstUI | CGCG | 4 cut(s) | 206, 891, 1046, 1523 |
| BstV2I | GAAGAC | 1 cut(s) | 728 |
| BstX2I | RGATCY | 1 cut(s) | 535 |
| BstYI | RGATCY | 1 cut(s) | 535 |
| BstZI | CGGCCG | 1 cut(s) | 1596 |
| BsuI | GTATCC | 1 cut(s) | 946 |
| BsuRI | GGCC | 9 cut(s) | 296, 352, 752, 942, 967, 1109, 1229, 1236, 1598 |
| BtgI | CCRYGG | 4 cut(s) | 291, 657, 1290, 1521 |
| BtgZI | GCGATG | 1 cut(s) | 187 |
| BtsCI | GGATG | 3 cut(s) | 81, 1105, 1621 |
| BtsIMutI | CAGTG | 5 cut(s) | 112, 360, 601, 1565, 1902 |
| Cac8I | GCNNGC | 9 cut(s) | 57, 350, 426, 754, 853, 940, 1126, 1338, 1579 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1336 |
| CfoI | GCGC | 4 cut(s) | 372, 893, 898, 1308 |
| Cfr10I | RCCGGY | 3 cut(s) | 506, 1124, 1577 |
| Cfr13I | GGNCC | 2 cut(s) | 350, 1198 |
| Cfr42I | CCGCGG | 1 cut(s) | 1524 |
| Cfr9I | CCCGGG | 2 cut(s) | 668, 1871 |
| CseI | GACGC | 4 cut(s) | 427, 1052, 1526, 1571 |
| Csp6I | GTAC | 3 cut(s) | 284, 716, 1555 |
| CspAI | ACCGGT | 1 cut(s) | 506 |
| CviAII | CATG | 7 cut(s) | 658, 694, 852, 1000, 1057, 1780, 1816 |
| CviQI | GTAC | 3 cut(s) | 284, 716, 1555 |
| DdeI | CTNAG | 4 cut(s) | 1620, 1707, 1894, 1962 |
| DpnI | GATC | 6 cut(s) | 34, 392, 537, 1274, 1453, 1631 |
| DpnII | GATC | 6 cut(s) | 32, 390, 535, 1272, 1451, 1629 |
| DraIII | CACNNNGTG | 1 cut(s) | 261 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 219, 923 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 219, 923 |
| EaeI | YGGCCR | 3 cut(s) | 294, 1234, 1596 |
| EagI | CGGCCG | 1 cut(s) | 1596 |
| Eam1104I | CTCTTC | 3 cut(s) | 180, 477, 1211 |
| EarI | CTCTTC | 3 cut(s) | 180, 477, 1211 |
| EciI | GGCGGA | 2 cut(s) | 153, 1432 |
| Ecl136II | GAGCTC | 1 cut(s) | 1224 |
| EclXI | CGGCCG | 1 cut(s) | 1596 |
| Eco130I | CCWWGG | 6 cut(s) | 64, 297, 419, 657, 737, 1407 |
| Eco24I | GRGCYC | 3 cut(s) | 94, 675, 1226 |
| Eco47I | GGWCC | 1 cut(s) | 1198 |
| Eco52I | CGGCCG | 1 cut(s) | 1596 |
| Eco53kI | GAGCTC | 1 cut(s) | 1224 |
| Eco57I | CTGAAG | 2 cut(s) | 1192, 1231 |
| Eco88I | CYCGRG | 4 cut(s) | 361, 668, 988, 1871 |
| EcoICRI | GAGCTC | 1 cut(s) | 1224 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 961 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1198 |
| EcoRI | GAATTC | 1 cut(s) | 194 |
| EcoRII | CCWGG | 3 cut(s) | 942, 1067, 1353 |
| EcoT14I | CCWWGG | 6 cut(s) | 64, 297, 419, 657, 737, 1407 |
| EcoT38I | GRGCYC | 3 cut(s) | 94, 675, 1226 |
| ErhI | CCWWGG | 6 cut(s) | 64, 297, 419, 657, 737, 1407 |
| FaeI | CATG | 7 cut(s) | 661, 697, 855, 1003, 1060, 1783, 1819 |
| FaqI | GGGAC | 3 cut(s) | 400, 781, 1211 |
| FatI | CATG | 7 cut(s) | 657, 693, 851, 999, 1056, 1779, 1815 |
| FauI | CCCGC | 7 cut(s) | 341, 417, 445, 1121, 1188, 1579, 1915 |
| FauNDI | CATATG | 1 cut(s) | 230 |
| FbaI | TGATCA | 1 cut(s) | 1629 |
| FblI | GTMKAC | 1 cut(s) | 324 |
| FokI | GGATG | 3 cut(s) | 68, 1112, 1628 |
| FriOI | GRGCYC | 3 cut(s) | 94, 675, 1226 |
| FspBI | CTAG | 7 cut(s) | 9, 65, 498, 533, 738, 1668, 1728 |
| FspI | TGCGCA | 1 cut(s) | 1307 |
| GlaI | GCGC | 4 cut(s) | 371, 892, 897, 1307 |
| GsaI | CCCAGC | 1 cut(s) | 1771 |
| GsuI | CTGGAG | 1 cut(s) | 965 |
| HaeIII | GGCC | 9 cut(s) | 296, 352, 752, 942, 967, 1109, 1229, 1236, 1598 |
| HgaI | GACGC | 4 cut(s) | 427, 1052, 1526, 1571 |
| HhaI | GCGC | 4 cut(s) | 372, 893, 898, 1308 |
| Hin1I | GRCGYC | 1 cut(s) | 1518 |
| Hin1II | CATG | 7 cut(s) | 661, 697, 855, 1003, 1060, 1783, 1819 |
| Hin6I | GCGC | 4 cut(s) | 370, 891, 896, 1306 |
| HinP1I | GCGC | 4 cut(s) | 370, 891, 896, 1306 |
| HincII | GTYRAC | 1 cut(s) | 471 |
| HindII | GTYRAC | 1 cut(s) | 471 |
| HindIII | AAGCTT | 1 cut(s) | 1533 |
| HpaI | GTTAAC | 1 cut(s) | 471 |
| Hpy166II | GTNNAC | 5 cut(s) | 325, 358, 471, 1051, 1694 |
| Hpy188I | TCNGA | 3 cut(s) | 478, 1456, 1795 |
| Hpy188III | TCNNGA | 7 cut(s) | 106, 394, 442, 533, 686, 1190, 1953 |
| Hpy8I | GTNNAC | 5 cut(s) | 325, 358, 471, 1051, 1694 |
| Hpy99I | CGWCG | 5 cut(s) | 443, 478, 1046, 1115, 1482 |
| HpyAV | CCTTC | 9 cut(s) | 539, 1027, 1168, 1211, 1255, 1498, 1682, 1709, 1913 |
| HpyCH4III | ACNGT | 4 cut(s) | 292, 448, 823, 1398 |
| HpyCH4IV | ACGT | 4 cut(s) | 327, 473, 1386, 1477 |
| HpyF3I | CTNAG | 4 cut(s) | 1620, 1707, 1894, 1962 |
| HpySE526I | ACGT | 4 cut(s) | 327, 473, 1386, 1477 |
| Hsp92I | GRCGYC | 1 cut(s) | 1518 |
| Hsp92II | CATG | 7 cut(s) | 661, 697, 855, 1003, 1060, 1783, 1819 |
| HspAI | GCGC | 4 cut(s) | 370, 891, 896, 1306 |
| KpnI | GGTACC | 1 cut(s) | 287 |
| KroI | GCCGGC | 2 cut(s) | 1124, 1577 |
| KroNI | GCCGGC | 2 cut(s) | 1126, 1579 |
| Ksp22I | TGATCA | 1 cut(s) | 1629 |
| KspAI | GTTAAC | 1 cut(s) | 471 |
| KspI | CCGCGG | 1 cut(s) | 1524 |
| Kzo9I | GATC | 6 cut(s) | 32, 390, 535, 1272, 1451, 1629 |
| LmnI | GCTCC | 6 cut(s) | 97, 166, 264, 946, 1333, 1769 |
| LweI | GCATC | 6 cut(s) | 774, 1111, 1606, 1786, 1918, 1948 |
| MaeI | CTAG | 7 cut(s) | 9, 65, 498, 533, 738, 1668, 1728 |
| MaeII | ACGT | 4 cut(s) | 327, 473, 1386, 1477 |
| MaeIII | GTNAC | 6 cut(s) | 442, 928, 1037, 1545, 1757, 1950 |
| MalI | GATC | 6 cut(s) | 34, 392, 537, 1274, 1453, 1631 |
| MbiI | CCGCTC | 1 cut(s) | 1195 |
| MboI | GATC | 6 cut(s) | 32, 390, 535, 1272, 1451, 1629 |
| MboII | GAAGA | 5 cut(s) | 167, 494, 529, 733, 1198 |
| MflI | RGATCY | 1 cut(s) | 535 |
| MhlI | GDGCHC | 3 cut(s) | 94, 675, 1226 |
| MlsI | TGGCCA | 2 cut(s) | 296, 1236 |
| MluCI | AATT | 5 cut(s) | 27, 194, 572, 679, 1175 |
| MluNI | TGGCCA | 2 cut(s) | 296, 1236 |
| MlyI | GAGTC | 5 cut(s) | 373, 1148, 1448, 1748, 1958 |
| MmeI | TCCRAC | 2 cut(s) | 456, 1472 |
| Mox20I | TGGCCA | 2 cut(s) | 296, 1236 |
| MroNI | GCCGGC | 2 cut(s) | 1124, 1577 |
| MscI | TGGCCA | 2 cut(s) | 296, 1236 |
| MseI | TTAA | 4 cut(s) | 330, 470, 575, 1539 |
| MslI | CAYNNNNRTG | 1 cut(s) | 377 |
| Msp20I | TGGCCA | 2 cut(s) | 296, 1236 |
| MspA1I | CMGCKG | 2 cut(s) | 1303, 1523 |
| MteI | GCGCNGCGC | 1 cut(s) | 894 |
| MvaI | CCWGG | 3 cut(s) | 944, 1069, 1355 |
| MvnI | CGCG | 4 cut(s) | 206, 891, 1046, 1523 |
| NaeI | GCCGGC | 2 cut(s) | 1126, 1579 |
| NciI | CCSGG | 8 cut(s) | 376, 586, 621, 669, 670, 814, 1872, 1873 |
| NcoI | CCATGG | 1 cut(s) | 657 |
| NdeI | CATATG | 1 cut(s) | 230 |
| NdeII | GATC | 6 cut(s) | 32, 390, 535, 1272, 1451, 1629 |
| NgoMIV | GCCGGC | 2 cut(s) | 1124, 1577 |
| NlaIII | CATG | 7 cut(s) | 661, 697, 855, 1003, 1060, 1783, 1819 |
| NlaIV | GGNNCC | 9 cut(s) | 93, 285, 381, 948, 994, 1073, 1137, 1199, 1765 |
| NmeAIII | GCCGAG | 2 cut(s) | 364, 1205 |
| NmuCI | GTSAC | 6 cut(s) | 442, 928, 1037, 1545, 1757, 1950 |
| NsbI | TGCGCA | 1 cut(s) | 1307 |
| NspI | RCATGY | 2 cut(s) | 855, 1060 |
| OliI | CACNNNNGTG | 1 cut(s) | 377 |
| PaeI | GCATGC | 1 cut(s) | 855 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 140 |
| PdiI | GCCGGC | 2 cut(s) | 1126, 1579 |
| PfeI | GAWTC | 8 cut(s) | 4, 12, 47, 109, 131, 397, 501, 520 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1360, 1816 |
| PfoI | TCCNGGA | 1 cut(s) | 619 |
| PinAI | ACCGGT | 1 cut(s) | 506 |
| Ple19I | CGATCG | 1 cut(s) | 1454 |
| PleI | GAGTC | 5 cut(s) | 372, 1148, 1447, 1747, 1957 |
| PpsI | GAGTC | 5 cut(s) | 372, 1148, 1447, 1747, 1957 |
| PpuMI | RGGWCCY | 1 cut(s) | 1198 |
| Psp124BI | GAGCTC | 1 cut(s) | 1226 |
| Psp5II | RGGWCCY | 1 cut(s) | 1198 |
| Psp6I | CCWGG | 3 cut(s) | 942, 1067, 1353 |
| PspFI | CCCAGC | 1 cut(s) | 1767 |
| PspGI | CCWGG | 3 cut(s) | 942, 1067, 1353 |
| PspN4I | GGNNCC | 9 cut(s) | 93, 285, 381, 948, 994, 1073, 1137, 1199, 1765 |
| PspPI | GGNCC | 2 cut(s) | 350, 1198 |
| PspPPI | RGGWCCY | 1 cut(s) | 1198 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1834, 1866 |
| PstI | CTGCAG | 3 cut(s) | 763, 1020, 1936 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1336 |
| PsuI | RGATCY | 1 cut(s) | 535 |
| PvuI | CGATCG | 1 cut(s) | 1454 |
| PvuII | CAGCTG | 1 cut(s) | 1303 |
| RsaI | GTAC | 3 cut(s) | 285, 717, 1556 |
| RsaNI | GTAC | 3 cut(s) | 284, 716, 1555 |
| RseI | CAYNNNNRTG | 1 cut(s) | 377 |
| SacI | GAGCTC | 1 cut(s) | 1226 |
| SacII | CCGCGG | 1 cut(s) | 1524 |
| SaqAI | TTAA | 4 cut(s) | 330, 470, 575, 1539 |
| Sau3AI | GATC | 6 cut(s) | 32, 390, 535, 1272, 1451, 1629 |
| Sau96I | GGNCC | 2 cut(s) | 350, 1198 |
| SchI | GAGTC | 5 cut(s) | 373, 1148, 1448, 1748, 1958 |
| SduI | GDGCHC | 3 cut(s) | 94, 675, 1226 |
| SfaNI | GCATC | 6 cut(s) | 774, 1111, 1606, 1786, 1918, 1948 |
| SfcI | CTRYAG | 3 cut(s) | 759, 1016, 1932 |
| Sfr303I | CCGCGG | 1 cut(s) | 1524 |
| SgrBI | CCGCGG | 1 cut(s) | 1524 |
| SinI | GGWCC | 1 cut(s) | 1198 |
| SmaI | CCCGGG | 2 cut(s) | 670, 1873 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 377 |
| SmlI | CTYRAG | 2 cut(s) | 104, 1941 |
| SmoI | CTYRAG | 2 cut(s) | 104, 1941 |
| SpeI | ACTAGT | 1 cut(s) | 1667 |
| SphI | GCATGC | 1 cut(s) | 855 |
| Sse9I | AATT | 5 cut(s) | 27, 194, 572, 679, 1175 |
| SspI | AATATT | 1 cut(s) | 183 |
| SspMI | CTAG | 7 cut(s) | 9, 65, 498, 533, 738, 1668, 1728 |
| SstI | GAGCTC | 1 cut(s) | 1226 |
| StyI | CCWWGG | 6 cut(s) | 64, 297, 419, 657, 737, 1407 |
| TaaI | ACNGT | 4 cut(s) | 292, 448, 823, 1398 |
| TaiI | ACGT | 4 cut(s) | 330, 476, 1389, 1480 |
| TaqI | TCGA | 8 cut(s) | 31, 198, 393, 410, 675, 732, 962, 1317 |
| TasI | AATT | 5 cut(s) | 27, 194, 572, 679, 1175 |
| TatI | WGTACW | 2 cut(s) | 715, 1554 |
| TauI | GCSGC | 8 cut(s) | 169, 241, 644, 812, 1015, 1063, 1448, 1523 |
| TfiI | GAWTC | 8 cut(s) | 4, 12, 47, 109, 131, 397, 501, 520 |
| Tru1I | TTAA | 4 cut(s) | 330, 470, 575, 1539 |
| Tru9I | TTAA | 4 cut(s) | 330, 470, 575, 1539 |
| TscAI | CASTG | 5 cut(s) | 119, 360, 601, 1572, 1902 |
| TseFI | GTSAC | 6 cut(s) | 442, 928, 1037, 1545, 1757, 1950 |
| Tsp45I | GTSAC | 6 cut(s) | 442, 928, 1037, 1545, 1757, 1950 |
| TspDTI | ATGAA | 5 cut(s) | 17, 682, 876, 1103, 1804 |
| TspGWI | ACGGA | 1 cut(s) | 132 |
| TspMI | CCCGGG | 2 cut(s) | 668, 1871 |
| TspRI | CASTG | 5 cut(s) | 119, 360, 601, 1572, 1902 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1360, 1816 |
| VpaK11BI | GGWCC | 1 cut(s) | 1198 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 961 |
| XapI | RAATTY | 3 cut(s) | 27, 194, 1175 |
| XbaI | TCTAGA | 1 cut(s) | 532 |
| XceI | RCATGY | 2 cut(s) | 855, 1060 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 940 |
| XmaI | CCCGGG | 2 cut(s) | 668, 1871 |
| XmaJI | CCTAGG | 2 cut(s) | 64, 737 |
| XmiI | GTMKAC | 1 cut(s) | 324 |
| XspI | CTAG | 7 cut(s) | 9, 65, 498, 533, 738, 1668, 1728 |