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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 349 |
| AccII | CGCG | 1 cut(s) | 226 |
| AciI | CCGC | 7 cut(s) | 117, 160, 224, 291, 390, 471, 485 |
| AclWI | GGATC | 1 cut(s) | 115 |
| AcoI | YGGCCR | 1 cut(s) | 37 |
| AcsI | RAATTY | 1 cut(s) | 314 |
| AcuI | CTGAAG | 2 cut(s) | 51, 129 |
| AfaI | GTAC | 1 cut(s) | 377 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 46, 149, 230, 287, 349, 405 |
| AgsI | TTSAA | 5 cut(s) | 57, 104, 138, 254, 329 |
| AjnI | CCWGG | 1 cut(s) | 10 |
| AleI | CACNNNNGTG | 1 cut(s) | 240 |
| AluBI | AGCT | 3 cut(s) | 176, 185, 306 |
| AluI | AGCT | 3 cut(s) | 176, 185, 306 |
| Alw26I | GTCTC | 1 cut(s) | 445 |
| AlwI | GGATC | 1 cut(s) | 115 |
| AoxI | GGCC | 2 cut(s) | 37, 232 |
| ApeKI | GCWGC | 7 cut(s) | 86, 206, 264, 306, 309, 365, 386 |
| ApoI | RAATTY | 1 cut(s) | 314 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 142 |
| AspS9I | GGNCC | 2 cut(s) | 320, 465 |
| AsuHPI | GGTGA | 1 cut(s) | 131 |
| AvaII | GGWCC | 2 cut(s) | 320, 465 |
| BanII | GRGCYC | 2 cut(s) | 171, 437 |
| BbvI | GCAGC | 7 cut(s) | 98, 193, 276, 293, 296, 377, 398 |
| BceAI | ACGGC | 1 cut(s) | 24 |
| BciT130I | CCWGG | 1 cut(s) | 12 |
| BclI | TGATCA | 1 cut(s) | 419 |
| BcoDI | GTCTC | 1 cut(s) | 445 |
| BfaI | CTAG | 1 cut(s) | 393 |
| BfmI | CTRYAG | 1 cut(s) | 262 |
| Bme1390I | CCNGG | 1 cut(s) | 12 |
| Bme18I | GGWCC | 2 cut(s) | 320, 465 |
| BmgT120I | GGNCC | 2 cut(s) | 320, 465 |
| BmiI | GGNNCC | 2 cut(s) | 170, 341 |
| BmrFI | CCNGG | 1 cut(s) | 12 |
| BmrI | ACTGGG | 1 cut(s) | 359 |
| BmsI | GCATC | 2 cut(s) | 5, 369 |
| BmuI | ACTGGG | 1 cut(s) | 359 |
| BoxI | GACNNNNGTC | 1 cut(s) | 225 |
| BpmI | CTGGAG | 2 cut(s) | 207, 322 |
| BsaJI | CCNNGG | 4 cut(s) | 10, 20, 163, 286 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 46, 149, 230, 287, 349, 405 |
| Bse118I | RCCGGY | 1 cut(s) | 398 |
| Bse1I | ACTGG | 2 cut(s) | 118, 354 |
| BseBI | CCWGG | 1 cut(s) | 12 |
| BseDI | CCNNGG | 4 cut(s) | 10, 20, 163, 286 |
| BseGI | GGATG | 1 cut(s) | 20 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 46, 149, 230, 287, 349, 405 |
| BseMII | CTCAG | 1 cut(s) | 495 |
| BseNI | ACTGG | 2 cut(s) | 118, 354 |
| BseXI | GCAGC | 7 cut(s) | 98, 193, 276, 293, 296, 377, 398 |
| Bsh1236I | CGCG | 1 cut(s) | 226 |
| Bsh1285I | CGRYCG | 1 cut(s) | 241 |
| BshFI | GGCC | 2 cut(s) | 39, 234 |
| BsiEI | CGRYCG | 1 cut(s) | 241 |
| BsiSI | CCGG | 3 cut(s) | 150, 399, 468 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 46, 149, 230, 287, 349, 405 |
| BsmAI | GTCTC | 1 cut(s) | 445 |
| BsnI | GGCC | 2 cut(s) | 39, 234 |
| Bsp1286I | GDGCHC | 2 cut(s) | 171, 437 |
| Bsp143I | GATC | 3 cut(s) | 107, 238, 419 |
| BspACI | CCGC | 7 cut(s) | 117, 160, 224, 291, 390, 471, 485 |
| BspANI | GGCC | 2 cut(s) | 39, 234 |
| BspCNI | CTCAG | 1 cut(s) | 494 |
| BspFNI | CGCG | 1 cut(s) | 226 |
| BspLI | GGNNCC | 2 cut(s) | 170, 341 |
| BspMAI | CTGCAG | 1 cut(s) | 266 |
| BspPI | GGATC | 1 cut(s) | 115 |
| BsrFI | RCCGGY | 1 cut(s) | 398 |
| BsrI | ACTGG | 2 cut(s) | 118, 354 |
| BssAI | RCCGGY | 1 cut(s) | 398 |
| BssECI | CCNNGG | 4 cut(s) | 10, 20, 163, 286 |
| BssMI | GATC | 3 cut(s) | 107, 238, 419 |
| BssT1I | CCWWGG | 1 cut(s) | 163 |
| Bst2UI | CCWGG | 1 cut(s) | 12 |
| BstC8I | GCNNGC | 4 cut(s) | 277, 370, 400, 412 |
| BstDEI | CTNAG | 2 cut(s) | 481, 502 |
| BstDSI | CCRYGG | 1 cut(s) | 20 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 285 |
| BstF5I | GGATG | 1 cut(s) | 20 |
| BstFNI | CGCG | 1 cut(s) | 226 |
| BstKTI | GATC | 3 cut(s) | 110, 241, 422 |
| BstMAI | GTCTC | 1 cut(s) | 445 |
| BstMBI | GATC | 3 cut(s) | 107, 238, 419 |
| BstMCI | CGRYCG | 1 cut(s) | 241 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 15, 182, 297, 306, 395 |
| BstNI | CCWGG | 1 cut(s) | 12 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 225 |
| BstSCI | CCNGG | 1 cut(s) | 10 |
| BstSFI | CTRYAG | 1 cut(s) | 262 |
| BstUI | CGCG | 1 cut(s) | 226 |
| BstV1I | GCAGC | 7 cut(s) | 98, 193, 276, 293, 296, 377, 398 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 242 |
| BsuRI | GGCC | 2 cut(s) | 39, 234 |
| BtgI | CCRYGG | 1 cut(s) | 20 |
| BtgZI | GCGATG | 1 cut(s) | 346 |
| BtsCI | GGATG | 1 cut(s) | 20 |
| BtsIMutI | CAGTG | 1 cut(s) | 415 |
| Cac8I | GCNNGC | 4 cut(s) | 277, 370, 400, 412 |
| Cfr10I | RCCGGY | 1 cut(s) | 398 |
| Cfr13I | GGNCC | 2 cut(s) | 320, 465 |
| CseI | GACGC | 1 cut(s) | 215 |
| Csp6I | GTAC | 1 cut(s) | 376 |
| CviAII | CATG | 1 cut(s) | 462 |
| CviQI | GTAC | 1 cut(s) | 376 |
| DdeI | CTNAG | 2 cut(s) | 481, 502 |
| DpnI | GATC | 3 cut(s) | 109, 240, 421 |
| DpnII | GATC | 3 cut(s) | 107, 238, 419 |
| EaeI | YGGCCR | 1 cut(s) | 37 |
| EciI | GGCGGA | 1 cut(s) | 486 |
| Eco130I | CCWWGG | 1 cut(s) | 163 |
| Eco24I | GRGCYC | 2 cut(s) | 171, 437 |
| Eco47I | GGWCC | 2 cut(s) | 320, 465 |
| Eco57I | CTGAAG | 2 cut(s) | 51, 129 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 285 |
| EcoRII | CCWGG | 1 cut(s) | 10 |
| EcoT14I | CCWWGG | 1 cut(s) | 163 |
| EcoT38I | GRGCYC | 2 cut(s) | 171, 437 |
| ErhI | CCWWGG | 1 cut(s) | 163 |
| FaeI | CATG | 1 cut(s) | 465 |
| FaiI | YATR | 2 cut(s) | 93, 463 |
| FatI | CATG | 1 cut(s) | 461 |
| FauI | CCCGC | 1 cut(s) | 231 |
| FbaI | TGATCA | 1 cut(s) | 419 |
| FokI | GGATG | 1 cut(s) | 27 |
| FriOI | GRGCYC | 2 cut(s) | 171, 437 |
| FspBI | CTAG | 1 cut(s) | 393 |
| GsuI | CTGGAG | 2 cut(s) | 207, 322 |
| HaeIII | GGCC | 2 cut(s) | 39, 234 |
| HapII | CCGG | 3 cut(s) | 150, 399, 468 |
| HgaI | GACGC | 1 cut(s) | 215 |
| Hin1II | CATG | 1 cut(s) | 465 |
| HinfI | GANTC | 2 cut(s) | 153, 488 |
| HpaII | CCGG | 3 cut(s) | 150, 399, 468 |
| HphI | GGTGA | 1 cut(s) | 131 |
| Hpy188I | TCNGA | 1 cut(s) | 173 |
| Hpy99I | CGWCG | 1 cut(s) | 383 |
| HpyAV | CCTTC | 7 cut(s) | 26, 98, 116, 125, 153, 290, 329 |
| HpyCH4IV | ACGT | 2 cut(s) | 52, 378 |
| HpyCH4V | TGCA | 2 cut(s) | 209, 264 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 15, 182, 297, 306, 395 |
| HpyF3I | CTNAG | 2 cut(s) | 481, 502 |
| HpySE526I | ACGT | 2 cut(s) | 52, 378 |
| Hsp92II | CATG | 1 cut(s) | 465 |
| KroI | GCCGGC | 1 cut(s) | 398 |
| KroNI | GCCGGC | 1 cut(s) | 400 |
| Ksp22I | TGATCA | 1 cut(s) | 419 |
| Kzo9I | GATC | 3 cut(s) | 107, 238, 419 |
| LmnI | GCTCC | 3 cut(s) | 174, 303, 339 |
| Lsp1109I | GCAGC | 7 cut(s) | 98, 193, 276, 293, 296, 377, 398 |
| LweI | GCATC | 2 cut(s) | 5, 369 |
| MaeI | CTAG | 1 cut(s) | 393 |
| MaeII | ACGT | 2 cut(s) | 52, 378 |
| MalI | GATC | 3 cut(s) | 109, 240, 421 |
| MboI | GATC | 3 cut(s) | 107, 238, 419 |
| MboII | GAAGA | 1 cut(s) | 140 |
| MhlI | GDGCHC | 2 cut(s) | 171, 437 |
| MluCI | AATT | 2 cut(s) | 314, 476 |
| MlyI | GAGTC | 2 cut(s) | 162, 482 |
| MnlI | CCTC | 6 cut(s) | 182, 239, 281, 376, 399, 505 |
| MroNI | GCCGGC | 1 cut(s) | 398 |
| MroXI | GAANNNNTTC | 1 cut(s) | 142 |
| MslI | CAYNNNNRTG | 1 cut(s) | 240 |
| MspA1I | CMGCKG | 1 cut(s) | 485 |
| MspI | CCGG | 3 cut(s) | 150, 399, 468 |
| MspR9I | CCNGG | 1 cut(s) | 12 |
| MvaI | CCWGG | 1 cut(s) | 12 |
| MvnI | CGCG | 1 cut(s) | 226 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 15, 182, 297, 306, 395 |
| NaeI | GCCGGC | 1 cut(s) | 400 |
| NdeII | GATC | 3 cut(s) | 107, 238, 419 |
| NgoMIV | GCCGGC | 1 cut(s) | 398 |
| NlaIII | CATG | 1 cut(s) | 465 |
| NlaIV | GGNNCC | 2 cut(s) | 170, 341 |
| NmeAIII | GCCGAG | 1 cut(s) | 182 |
| OliI | CACNNNNGTG | 1 cut(s) | 240 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 369 |
| PdiI | GCCGGC | 1 cut(s) | 400 |
| PdmI | GAANNNNTTC | 1 cut(s) | 142 |
| PflFI | GACNNNGTC | 1 cut(s) | 351 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 349 |
| Ple19I | CGATCG | 1 cut(s) | 241 |
| PleI | GAGTC | 2 cut(s) | 161, 482 |
| PpsI | GAGTC | 2 cut(s) | 161, 482 |
| PshAI | GACNNNNGTC | 1 cut(s) | 225 |
| Psp6I | CCWGG | 1 cut(s) | 10 |
| PspGI | CCWGG | 1 cut(s) | 10 |
| PspN4I | GGNNCC | 2 cut(s) | 170, 341 |
| PspPI | GGNCC | 2 cut(s) | 320, 465 |
| PstI | CTGCAG | 1 cut(s) | 266 |
| PsyI | GACNNNGTC | 1 cut(s) | 351 |
| PvuI | CGATCG | 1 cut(s) | 241 |
| RsaI | GTAC | 1 cut(s) | 377 |
| RsaNI | GTAC | 1 cut(s) | 376 |
| RseI | CAYNNNNRTG | 1 cut(s) | 240 |
| Sau3AI | GATC | 3 cut(s) | 107, 238, 419 |
| Sau96I | GGNCC | 2 cut(s) | 320, 465 |
| SchI | GAGTC | 2 cut(s) | 162, 482 |
| ScrFI | CCNGG | 1 cut(s) | 12 |
| SduI | GDGCHC | 2 cut(s) | 171, 437 |
| SfaNI | GCATC | 2 cut(s) | 5, 369 |
| SfcI | CTRYAG | 1 cut(s) | 262 |
| SinI | GGWCC | 2 cut(s) | 320, 465 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 240 |
| Sse9I | AATT | 2 cut(s) | 314, 476 |
| SsiI | CCGC | 7 cut(s) | 117, 160, 224, 291, 390, 471, 485 |
| SspMI | CTAG | 1 cut(s) | 393 |
| StyD4I | CCNGG | 1 cut(s) | 10 |
| StyI | CCWWGG | 1 cut(s) | 163 |
| TaiI | ACGT | 2 cut(s) | 55, 381 |
| TaqI | TCGA | 1 cut(s) | 381 |
| TaqII | GACCGA | 1 cut(s) | 300 |
| TasI | AATT | 2 cut(s) | 314, 476 |
| TauI | GCSGC | 3 cut(s) | 162, 294, 392 |
| TscAI | CASTG | 1 cut(s) | 422 |
| TseI | GCWGC | 7 cut(s) | 86, 206, 264, 306, 309, 365, 386 |
| TspDTI | ATGAA | 1 cut(s) | 229 |
| TspRI | CASTG | 1 cut(s) | 422 |
| Tth111I | GACNNNGTC | 1 cut(s) | 351 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 349 |
| VpaK11BI | GGWCC | 2 cut(s) | 320, 465 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 285 |
| XapI | RAATTY | 1 cut(s) | 314 |
| XmnI | GAANNNNTTC | 1 cut(s) | 142 |
| XspI | CTAG | 1 cut(s) | 393 |