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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 167 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 375 |
| AccBSI | CCGCTC | 1 cut(s) | 76 |
| AccI | GTMKAC | 1 cut(s) | 232 |
| AccII | CGCG | 4 cut(s) | 16, 187, 780, 797 |
| AcsI | RAATTY | 3 cut(s) | 324, 361, 499 |
| AfaI | GTAC | 3 cut(s) | 193, 273, 489 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 63, 116, 375, 564, 621 |
| AflIII | ACRYGT | 2 cut(s) | 372, 778 |
| AgsI | TTSAA | 1 cut(s) | 323 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 552 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 591, 623 |
| AluBI | AGCT | 1 cut(s) | 762 |
| AluI | AGCT | 1 cut(s) | 762 |
| Alw21I | GWGCWC | 1 cut(s) | 727 |
| Alw26I | GTCTC | 2 cut(s) | 16, 160 |
| Ama87I | CYCGRG | 1 cut(s) | 20 |
| AoxI | GGCC | 1 cut(s) | 411 |
| ApeKI | GCWGC | 2 cut(s) | 95, 215 |
| ApoI | RAATTY | 3 cut(s) | 324, 361, 499 |
| AspLEI | GCGC | 5 cut(s) | 187, 253, 394, 523, 768 |
| AspS9I | GGNCC | 4 cut(s) | 411, 429, 570, 612 |
| AsuHPI | GGTGA | 2 cut(s) | 220, 508 |
| AsuNHI | GCTAGC | 2 cut(s) | 79, 388 |
| AvaI | CYCGRG | 1 cut(s) | 20 |
| AvaII | GGWCC | 3 cut(s) | 429, 570, 612 |
| BanI | GGYRCC | 1 cut(s) | 167 |
| BauI | CACGAG | 1 cut(s) | 275 |
| Bbv12I | GWGCWC | 1 cut(s) | 727 |
| BbvI | GCAGC | 2 cut(s) | 107, 202 |
| BccI | CCATC | 2 cut(s) | 106, 588 |
| BceAI | ACGGC | 3 cut(s) | 181, 251, 398 |
| BcoDI | GTCTC | 2 cut(s) | 16, 160 |
| BfaI | CTAG | 2 cut(s) | 80, 389 |
| BfoI | RGCGCY | 2 cut(s) | 395, 524 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 146 |
| Bme18I | GGWCC | 3 cut(s) | 429, 570, 612 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 552 |
| BmeT110I | CYCGRG | 1 cut(s) | 20 |
| BmgT120I | GGNCC | 4 cut(s) | 411, 429, 570, 612 |
| BmiI | GGNNCC | 4 cut(s) | 169, 571, 613, 627 |
| BmsI | GCATC | 2 cut(s) | 238, 252 |
| BmtI | GCTAGC | 2 cut(s) | 83, 392 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 286, 318 |
| Bsa29I | ATCGAT | 1 cut(s) | 246 |
| BsaI | GGTCTC | 1 cut(s) | 160 |
| BsaJI | CCNNGG | 3 cut(s) | 482, 585, 664 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 617, 647 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 63, 116, 375, 564, 621 |
| Bse118I | RCCGGY | 2 cut(s) | 98, 464 |
| BseCI | ATCGAT | 1 cut(s) | 246 |
| BseDI | CCNNGG | 3 cut(s) | 482, 585, 664 |
| BseGI | GGATG | 1 cut(s) | 599 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 63, 116, 375, 564, 621 |
| BseRI | GAGGAG | 1 cut(s) | 86 |
| BseXI | GCAGC | 2 cut(s) | 107, 202 |
| BsgI | GTGCAG | 1 cut(s) | 114 |
| Bsh1236I | CGCG | 4 cut(s) | 16, 187, 780, 797 |
| Bsh1285I | CGRYCG | 1 cut(s) | 229 |
| BshFI | GGCC | 1 cut(s) | 413 |
| BshNI | GGYRCC | 1 cut(s) | 167 |
| BshVI | ATCGAT | 1 cut(s) | 246 |
| BsiEI | CGRYCG | 1 cut(s) | 229 |
| BsiHKAI | GWGCWC | 1 cut(s) | 727 |
| BsiHKCI | CYCGRG | 1 cut(s) | 20 |
| BsiSI | CCGG | 3 cut(s) | 99, 201, 465 |
| BsiWI | CGTACG | 1 cut(s) | 191 |
| BslFI | GGGAC | 4 cut(s) | 3, 540, 559, 583 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 63, 116, 375, 564, 621 |
| BsmAI | GTCTC | 2 cut(s) | 16, 160 |
| BsmFI | GGGAC | 4 cut(s) | 3, 540, 559, 583 |
| BsmI | GAATGC | 1 cut(s) | 142 |
| BsnI | GGCC | 1 cut(s) | 413 |
| Bso31I | GGTCTC | 1 cut(s) | 160 |
| BsoBI | CYCGRG | 1 cut(s) | 20 |
| Bsp1286I | GDGCHC | 1 cut(s) | 727 |
| Bsp143I | GATC | 2 cut(s) | 531, 678 |
| BspANI | GGCC | 1 cut(s) | 413 |
| BspDI | ATCGAT | 1 cut(s) | 246 |
| BspFNI | CGCG | 4 cut(s) | 16, 187, 780, 797 |
| BspLI | GGNNCC | 4 cut(s) | 169, 571, 613, 627 |
| BspOI | GCTAGC | 2 cut(s) | 83, 392 |
| BspQI | GCTCTTC | 1 cut(s) | 732 |
| BspT107I | GGYRCC | 1 cut(s) | 167 |
| BspTNI | GGTCTC | 1 cut(s) | 160 |
| BsrBI | CCGCTC | 1 cut(s) | 76 |
| BsrFI | RCCGGY | 2 cut(s) | 98, 464 |
| BssAI | RCCGGY | 2 cut(s) | 98, 464 |
| BssECI | CCNNGG | 3 cut(s) | 482, 585, 664 |
| BssMI | GATC | 2 cut(s) | 531, 678 |
| BssSI | CACGAG | 1 cut(s) | 275 |
| BssT1I | CCWWGG | 1 cut(s) | 482 |
| Bst2BI | CACGAG | 1 cut(s) | 275 |
| Bst4CI | ACNGT | 3 cut(s) | 196, 230, 437 |
| Bst6I | CTCTTC | 2 cut(s) | 732, 782 |
| BstC8I | GCNNGC | 6 cut(s) | 81, 107, 390, 411, 760, 764 |
| BstDSI | CCRYGG | 1 cut(s) | 585 |
| BstF5I | GGATG | 1 cut(s) | 599 |
| BstFNI | CGCG | 4 cut(s) | 16, 187, 780, 797 |
| BstH2I | RGCGCY | 2 cut(s) | 395, 524 |
| BstHHI | GCGC | 5 cut(s) | 187, 253, 394, 523, 768 |
| BstKTI | GATC | 2 cut(s) | 534, 681 |
| BstMAI | GTCTC | 2 cut(s) | 16, 160 |
| BstMBI | GATC | 2 cut(s) | 531, 678 |
| BstMCI | CGRYCG | 1 cut(s) | 229 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 53, 73, 146, 221, 385, 415 |
| BstNSI | RCATGY | 1 cut(s) | 376 |
| BstUI | CGCG | 4 cut(s) | 16, 187, 780, 797 |
| BstV1I | GCAGC | 2 cut(s) | 107, 202 |
| Bsu15I | ATCGAT | 1 cut(s) | 246 |
| BsuRI | GGCC | 1 cut(s) | 413 |
| BsuTUI | ATCGAT | 1 cut(s) | 246 |
| BtgI | CCRYGG | 1 cut(s) | 585 |
| BtsCI | GGATG | 1 cut(s) | 599 |
| Cac8I | GCNNGC | 6 cut(s) | 81, 107, 390, 411, 760, 764 |
| CfoI | GCGC | 5 cut(s) | 187, 253, 394, 523, 768 |
| Cfr10I | RCCGGY | 2 cut(s) | 98, 464 |
| Cfr13I | GGNCC | 4 cut(s) | 411, 429, 570, 612 |
| ClaI | ATCGAT | 1 cut(s) | 246 |
| CseI | GACGC | 3 cut(s) | 5, 207, 786 |
| Csp6I | GTAC | 3 cut(s) | 192, 272, 488 |
| CviAII | CATG | 3 cut(s) | 373, 552, 559 |
| CviQI | GTAC | 3 cut(s) | 192, 272, 488 |
| DpnI | GATC | 2 cut(s) | 533, 680 |
| DpnII | GATC | 2 cut(s) | 531, 678 |
| DriI | GACNNNNNGTC | 1 cut(s) | 552 |
| Eam1104I | CTCTTC | 2 cut(s) | 732, 782 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 552 |
| EarI | CTCTTC | 2 cut(s) | 732, 782 |
| EciI | GGCGGA | 2 cut(s) | 211, 673 |
| Eco130I | CCWWGG | 1 cut(s) | 482 |
| Eco31I | GGTCTC | 1 cut(s) | 160 |
| Eco47I | GGWCC | 3 cut(s) | 429, 570, 612 |
| Eco88I | CYCGRG | 1 cut(s) | 20 |
| EcoO109I | RGGNCCY | 1 cut(s) | 570 |
| EcoT14I | CCWWGG | 1 cut(s) | 482 |
| ErhI | CCWWGG | 1 cut(s) | 482 |
| FaeI | CATG | 3 cut(s) | 376, 555, 562 |
| FaiI | YATR | 9 cut(s) | 374, 406, 472, 515, 553, 560, 693, 716, 808 |
| FaqI | GGGAC | 4 cut(s) | 3, 540, 559, 583 |
| FatI | CATG | 3 cut(s) | 372, 551, 558 |
| FauI | CCCGC | 4 cut(s) | 315, 402, 558, 693 |
| FblI | GTMKAC | 1 cut(s) | 232 |
| FokI | GGATG | 1 cut(s) | 606 |
| FspBI | CTAG | 2 cut(s) | 80, 389 |
| GlaI | GCGC | 5 cut(s) | 186, 252, 393, 522, 767 |
| HaeII | RGCGCY | 2 cut(s) | 395, 524 |
| HaeIII | GGCC | 1 cut(s) | 413 |
| HapII | CCGG | 3 cut(s) | 99, 201, 465 |
| HgaI | GACGC | 3 cut(s) | 5, 207, 786 |
| HhaI | GCGC | 5 cut(s) | 187, 253, 394, 523, 768 |
| Hin1II | CATG | 3 cut(s) | 376, 555, 562 |
| Hin6I | GCGC | 5 cut(s) | 185, 251, 392, 521, 766 |
| HinP1I | GCGC | 5 cut(s) | 185, 251, 392, 521, 766 |
| HinfI | GANTC | 5 cut(s) | 143, 476, 505, 538, 547 |
| HpaII | CCGG | 3 cut(s) | 99, 201, 465 |
| HphI | GGTGA | 2 cut(s) | 220, 508 |
| Hpy166II | GTNNAC | 2 cut(s) | 233, 274 |
| Hpy188I | TCNGA | 2 cut(s) | 649, 665 |
| Hpy188III | TCNNGA | 2 cut(s) | 20, 535 |
| Hpy8I | GTNNAC | 2 cut(s) | 233, 274 |
| Hpy99I | CGWCG | 4 cut(s) | 167, 272, 634, 780 |
| HpyAV | CCTTC | 5 cut(s) | 205, 250, 329, 420, 584 |
| HpyCH4III | ACNGT | 3 cut(s) | 196, 230, 437 |
| HpyCH4IV | ACGT | 1 cut(s) | 632 |
| HpyCH4V | TGCA | 3 cut(s) | 95, 351, 452 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 53, 73, 146, 221, 385, 415 |
| HpySE526I | ACGT | 1 cut(s) | 632 |
| Hsp92II | CATG | 3 cut(s) | 376, 555, 562 |
| HspAI | GCGC | 5 cut(s) | 185, 251, 392, 521, 766 |
| Kzo9I | GATC | 2 cut(s) | 531, 678 |
| LguI | GCTCTTC | 1 cut(s) | 732 |
| LmnI | GCTCC | 3 cut(s) | 73, 518, 625 |
| LpnPI | CCDG | 3 cut(s) | 112, 214, 478 |
| Lsp1109I | GCAGC | 2 cut(s) | 107, 202 |
| LweI | GCATC | 2 cut(s) | 238, 252 |
| MaeI | CTAG | 2 cut(s) | 80, 389 |
| MaeII | ACGT | 1 cut(s) | 632 |
| MaeIII | GTNAC | 1 cut(s) | 296 |
| MalI | GATC | 2 cut(s) | 533, 680 |
| MbiI | CCGCTC | 1 cut(s) | 76 |
| MboI | GATC | 2 cut(s) | 531, 678 |
| MboII | GAAGA | 4 cut(s) | 53, 719, 796, 799 |
| MhlI | GDGCHC | 1 cut(s) | 727 |
| MluCI | AATT | 4 cut(s) | 324, 361, 499, 741 |
| MluI | ACGCGT | 1 cut(s) | 778 |
| MlyI | GAGTC | 3 cut(s) | 152, 514, 541 |
| MmeI | TCCRAC | 2 cut(s) | 627, 639 |
| MnlI | CCTC | 9 cut(s) | 64, 121, 175, 232, 271, 434, 536, 613, 659 |
| MseI | TTAA | 2 cut(s) | 383, 642 |
| MspI | CCGG | 3 cut(s) | 99, 201, 465 |
| Mva1269I | GAATGC | 1 cut(s) | 142 |
| MvnI | CGCG | 4 cut(s) | 16, 187, 780, 797 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 53, 73, 146, 221, 385, 415 |
| NdeII | GATC | 2 cut(s) | 531, 678 |
| NheI | GCTAGC | 2 cut(s) | 79, 388 |
| NlaIII | CATG | 3 cut(s) | 376, 555, 562 |
| NlaIV | GGNNCC | 4 cut(s) | 169, 571, 613, 627 |
| NmeAIII | GCCGAG | 1 cut(s) | 166 |
| NmuCI | GTSAC | 1 cut(s) | 296 |
| NspI | RCATGY | 1 cut(s) | 376 |
| PciI | ACATGT | 1 cut(s) | 372 |
| PciSI | GCTCTTC | 1 cut(s) | 732 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 13, 661, 801 |
| PctI | GAATGC | 1 cut(s) | 142 |
| PfeI | GAWTC | 2 cut(s) | 476, 538 |
| Pfl23II | CGTACG | 1 cut(s) | 191 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 375 |
| PleI | GAGTC | 3 cut(s) | 151, 513, 541 |
| PpsI | GAGTC | 3 cut(s) | 151, 513, 541 |
| PpuMI | RGGWCCY | 1 cut(s) | 570 |
| PscI | ACATGT | 1 cut(s) | 372 |
| Psp5II | RGGWCCY | 1 cut(s) | 570 |
| PspLI | CGTACG | 1 cut(s) | 191 |
| PspN4I | GGNNCC | 4 cut(s) | 169, 571, 613, 627 |
| PspPI | GGNCC | 4 cut(s) | 411, 429, 570, 612 |
| PspPPI | RGGWCCY | 1 cut(s) | 570 |
| RsaI | GTAC | 3 cut(s) | 193, 273, 489 |
| RsaNI | GTAC | 3 cut(s) | 192, 272, 488 |
| SapI | GCTCTTC | 1 cut(s) | 732 |
| SaqAI | TTAA | 2 cut(s) | 383, 642 |
| Sau3AI | GATC | 2 cut(s) | 531, 678 |
| Sau96I | GGNCC | 4 cut(s) | 411, 429, 570, 612 |
| SchI | GAGTC | 3 cut(s) | 152, 514, 541 |
| SduI | GDGCHC | 1 cut(s) | 727 |
| SetI | ASST | 5 cut(s) | 321, 575, 635, 670, 764 |
| SfaNI | GCATC | 2 cut(s) | 238, 252 |
| SinI | GGWCC | 3 cut(s) | 429, 570, 612 |
| Sse9I | AATT | 4 cut(s) | 324, 361, 499, 741 |
| SspMI | CTAG | 2 cut(s) | 80, 389 |
| StyI | CCWWGG | 1 cut(s) | 482 |
| TaaI | ACNGT | 3 cut(s) | 196, 230, 437 |
| TaiI | ACGT | 1 cut(s) | 635 |
| TaqI | TCGA | 4 cut(s) | 246, 534, 541, 677 |
| TasI | AATT | 4 cut(s) | 324, 361, 499, 741 |
| TauI | GCSGC | 8 cut(s) | 50, 53, 56, 79, 190, 313, 565, 758 |
| TfiI | GAWTC | 2 cut(s) | 476, 538 |
| Tru1I | TTAA | 2 cut(s) | 383, 642 |
| Tru9I | TTAA | 2 cut(s) | 383, 642 |
| TseFI | GTSAC | 1 cut(s) | 296 |
| TseI | GCWGC | 2 cut(s) | 95, 215 |
| Tsp45I | GTSAC | 1 cut(s) | 296 |
| TspGWI | ACGGA | 1 cut(s) | 602 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 375 |
| VpaK11BI | GGWCC | 3 cut(s) | 429, 570, 612 |
| XapI | RAATTY | 3 cut(s) | 324, 361, 499 |
| XceI | RCATGY | 1 cut(s) | 376 |
| XmiI | GTMKAC | 1 cut(s) | 232 |
| XspI | CTAG | 2 cut(s) | 80, 389 |