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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 884 |
| AatII | GACGTC | 1 cut(s) | 834 |
| Acc65I | GGTACC | 1 cut(s) | 875 |
| AccB1I | GGYRCC | 2 cut(s) | 659, 875 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 669 |
| AccBSI | CCGCTC | 6 cut(s) | 226, 367, 533, 777, 869, 902 |
| AclWI | GGATC | 2 cut(s) | 435, 454 |
| AcsI | RAATTY | 1 cut(s) | 71 |
| AcuI | CTGAAG | 2 cut(s) | 443, 449 |
| AcyI | GRCGYC | 2 cut(s) | 551, 831 |
| AdeI | CACNNNGTG | 1 cut(s) | 728 |
| AfaI | GTAC | 2 cut(s) | 590, 877 |
| AhlI | ACTAGT | 1 cut(s) | 23 |
| AjiI | CACGTC | 2 cut(s) | 373, 391 |
| AjnI | CCWGG | 1 cut(s) | 395 |
| AleI | CACNNNNGTG | 1 cut(s) | 26 |
| AluBI | AGCT | 9 cut(s) | 91, 153, 232, 301, 349, 560, 643, 924, 975 |
| AluI | AGCT | 9 cut(s) | 91, 153, 232, 301, 349, 560, 643, 924, 975 |
| Alw21I | GWGCWC | 2 cut(s) | 10, 125 |
| Alw26I | GTCTC | 3 cut(s) | 257, 397, 838 |
| AlwI | GGATC | 2 cut(s) | 435, 454 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 646, 949 |
| Ama87I | CYCGRG | 2 cut(s) | 216, 864 |
| AoxI | GGCC | 4 cut(s) | 156, 273, 618, 887 |
| ApoI | RAATTY | 1 cut(s) | 71 |
| Asp718I | GGTACC | 1 cut(s) | 875 |
| AspS9I | GGNCC | 2 cut(s) | 623, 909 |
| AsuC2I | CCSGG | 2 cut(s) | 217, 218 |
| AsuHPI | GGTGA | 2 cut(s) | 457, 508 |
| AvaI | CYCGRG | 2 cut(s) | 216, 864 |
| AvaII | GGWCC | 2 cut(s) | 623, 909 |
| BaeGI | GKGCMC | 1 cut(s) | 168 |
| BanI | GGYRCC | 2 cut(s) | 659, 875 |
| BanII | GRGCYC | 1 cut(s) | 896 |
| BauI | CACGAG | 1 cut(s) | 903 |
| Bbv12I | GWGCWC | 2 cut(s) | 10, 125 |
| BbvCI | CCTCAGC | 1 cut(s) | 747 |
| BccI | CCATC | 3 cut(s) | 259, 836, 866 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 38, 72 |
| BciT130I | CCWGG | 1 cut(s) | 397 |
| BclI | TGATCA | 1 cut(s) | 309 |
| BcnI | CCSGG | 2 cut(s) | 217, 218 |
| BcoDI | GTCTC | 3 cut(s) | 257, 397, 838 |
| BcuI | ACTAGT | 1 cut(s) | 23 |
| BfaI | CTAG | 2 cut(s) | 24, 851 |
| BfmI | CTRYAG | 3 cut(s) | 148, 555, 647 |
| Bme1390I | CCNGG | 3 cut(s) | 217, 218, 397 |
| Bme18I | GGWCC | 2 cut(s) | 623, 909 |
| BmeT110I | CYCGRG | 2 cut(s) | 216, 864 |
| BmgBI | CACGTC | 2 cut(s) | 373, 391 |
| BmgT120I | GGNCC | 2 cut(s) | 623, 909 |
| BmiI | GGNNCC | 3 cut(s) | 661, 877, 910 |
| BmrFI | CCNGG | 3 cut(s) | 217, 218, 397 |
| BmrI | ACTGGG | 1 cut(s) | 679 |
| BmsI | GCATC | 5 cut(s) | 283, 316, 325, 793, 942 |
| BmuI | ACTGGG | 1 cut(s) | 679 |
| BpmI | CTGGAG | 5 cut(s) | 128, 239, 379, 422, 527 |
| Bpu10I | CCTNAGC | 2 cut(s) | 233, 747 |
| BpuMI | CCSGG | 2 cut(s) | 217, 218 |
| BsaHI | GRCGYC | 2 cut(s) | 551, 831 |
| BsaI | GGTCTC | 1 cut(s) | 257 |
| BsaJI | CCNNGG | 4 cut(s) | 215, 216, 276, 741 |
| BsaWI | WCCGGW | 1 cut(s) | 787 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 377, 407, 799, 829 |
| Bse118I | RCCGGY | 1 cut(s) | 620 |
| Bse1I | ACTGG | 3 cut(s) | 674, 702, 928 |
| BseBI | CCWGG | 1 cut(s) | 397 |
| BseDI | CCNNGG | 4 cut(s) | 215, 216, 276, 741 |
| BseGI | GGATG | 4 cut(s) | 298, 517, 784, 877 |
| BseMII | CTCAG | 4 cut(s) | 597, 738, 815, 836 |
| BseNI | ACTGG | 3 cut(s) | 674, 702, 928 |
| BseRI | GAGGAG | 2 cut(s) | 254, 581 |
| BseSI | GKGCMC | 1 cut(s) | 168 |
| BseYI | CCCAGC | 1 cut(s) | 91 |
| BsgI | GTGCAG | 1 cut(s) | 287 |
| BshFI | GGCC | 4 cut(s) | 158, 275, 620, 889 |
| BshNI | GGYRCC | 2 cut(s) | 659, 875 |
| BsiHKAI | GWGCWC | 2 cut(s) | 10, 125 |
| BsiHKCI | CYCGRG | 2 cut(s) | 216, 864 |
| BsiSI | CCGG | 3 cut(s) | 217, 621, 788 |
| BslFI | GGGAC | 2 cut(s) | 383, 922 |
| BsmAI | GTCTC | 3 cut(s) | 257, 397, 838 |
| BsmBI | CGTCTC | 2 cut(s) | 397, 838 |
| BsmFI | GGGAC | 2 cut(s) | 383, 922 |
| BsnI | GGCC | 4 cut(s) | 158, 275, 620, 889 |
| Bso31I | GGTCTC | 1 cut(s) | 257 |
| BsoBI | CYCGRG | 2 cut(s) | 216, 864 |
| Bsp1286I | GDGCHC | 4 cut(s) | 10, 125, 168, 896 |
| Bsp143I | GATC | 4 cut(s) | 309, 427, 459, 913 |
| BspANI | GGCC | 4 cut(s) | 158, 275, 620, 889 |
| BspCNI | CTCAG | 4 cut(s) | 598, 739, 814, 835 |
| BspLI | GGNNCC | 3 cut(s) | 661, 877, 910 |
| BspMAI | CTGCAG | 2 cut(s) | 559, 651 |
| BspPI | GGATC | 2 cut(s) | 435, 454 |
| BspQI | GCTCTTC | 1 cut(s) | 32 |
| BspT107I | GGYRCC | 2 cut(s) | 659, 875 |
| BspTNI | GGTCTC | 1 cut(s) | 257 |
| BsrBI | CCGCTC | 6 cut(s) | 226, 367, 533, 777, 869, 902 |
| BsrFI | RCCGGY | 1 cut(s) | 620 |
| BsrI | ACTGG | 3 cut(s) | 674, 702, 928 |
| BssAI | RCCGGY | 1 cut(s) | 620 |
| BssECI | CCNNGG | 4 cut(s) | 215, 216, 276, 741 |
| BssMI | GATC | 4 cut(s) | 309, 427, 459, 913 |
| BssNI | GRCGYC | 2 cut(s) | 551, 831 |
| BssSI | CACGAG | 1 cut(s) | 903 |
| BssT1I | CCWWGG | 1 cut(s) | 276 |
| Bst2BI | CACGAG | 1 cut(s) | 903 |
| Bst2UI | CCWGG | 1 cut(s) | 397 |
| Bst6I | CTCTTC | 2 cut(s) | 32, 494 |
| BstACI | GRCGYC | 2 cut(s) | 551, 831 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 646 |
| BstC8I | GCNNGC | 2 cut(s) | 347, 720 |
| BstDEI | CTNAG | 6 cut(s) | 233, 483, 606, 747, 801, 822 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 311, 422 |
| BstF5I | GGATG | 4 cut(s) | 298, 517, 784, 877 |
| BstKTI | GATC | 4 cut(s) | 312, 430, 462, 916 |
| BstMAI | GTCTC | 3 cut(s) | 257, 397, 838 |
| BstMBI | GATC | 4 cut(s) | 309, 427, 459, 913 |
| BstNI | CCWGG | 1 cut(s) | 397 |
| BstSCI | CCNGG | 3 cut(s) | 215, 216, 395 |
| BstSFI | CTRYAG | 3 cut(s) | 148, 555, 647 |
| BstSLI | GKGCMC | 1 cut(s) | 168 |
| BstX2I | RGATCY | 1 cut(s) | 459 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 28, 692 |
| BstYI | RGATCY | 1 cut(s) | 459 |
| BsuRI | GGCC | 4 cut(s) | 158, 275, 620, 889 |
| BtrI | CACGTC | 2 cut(s) | 373, 391 |
| BtsCI | GGATG | 4 cut(s) | 298, 517, 784, 877 |
| BtsI | GCAGTG | 1 cut(s) | 713 |
| BtsIMutI | CAGTG | 2 cut(s) | 473, 713 |
| Cac8I | GCNNGC | 2 cut(s) | 347, 720 |
| CaiI | CAGNNNCTG | 2 cut(s) | 646, 949 |
| Cfr10I | RCCGGY | 1 cut(s) | 620 |
| Cfr13I | GGNCC | 2 cut(s) | 623, 909 |
| Cfr9I | CCCGGG | 1 cut(s) | 216 |
| CseI | GACGC | 1 cut(s) | 540 |
| Csp6I | GTAC | 2 cut(s) | 589, 876 |
| CviAII | CATG | 1 cut(s) | 185 |
| CviQI | GTAC | 2 cut(s) | 589, 876 |
| DdeI | CTNAG | 6 cut(s) | 233, 483, 606, 747, 801, 822 |
| DpnI | GATC | 4 cut(s) | 311, 429, 461, 915 |
| DpnII | GATC | 4 cut(s) | 309, 427, 459, 913 |
| DraIII | CACNNNGTG | 1 cut(s) | 728 |
| Eam1104I | CTCTTC | 2 cut(s) | 32, 494 |
| EarI | CTCTTC | 2 cut(s) | 32, 494 |
| EciI | GGCGGA | 1 cut(s) | 305 |
| Eco130I | CCWWGG | 1 cut(s) | 276 |
| Eco24I | GRGCYC | 1 cut(s) | 896 |
| Eco31I | GGTCTC | 1 cut(s) | 257 |
| Eco47I | GGWCC | 2 cut(s) | 623, 909 |
| Eco57I | CTGAAG | 2 cut(s) | 443, 449 |
| Eco88I | CYCGRG | 2 cut(s) | 216, 864 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 311, 422 |
| EcoRI | GAATTC | 1 cut(s) | 71 |
| EcoRII | CCWGG | 1 cut(s) | 395 |
| EcoT14I | CCWWGG | 1 cut(s) | 276 |
| EcoT38I | GRGCYC | 1 cut(s) | 896 |
| ErhI | CCWWGG | 1 cut(s) | 276 |
| Esp3I | CGTCTC | 2 cut(s) | 397, 838 |
| FaeI | CATG | 1 cut(s) | 188 |
| FaiI | YATR | 5 cut(s) | 186, 413, 638, 884, 966 |
| FaqI | GGGAC | 2 cut(s) | 383, 922 |
| FatI | CATG | 1 cut(s) | 184 |
| FauI | CCCGC | 3 cut(s) | 360, 727, 819 |
| FbaI | TGATCA | 1 cut(s) | 309 |
| FokI | GGATG | 4 cut(s) | 305, 524, 771, 884 |
| FriOI | GRGCYC | 1 cut(s) | 896 |
| FspBI | CTAG | 2 cut(s) | 24, 851 |
| GsaI | CCCAGC | 1 cut(s) | 95 |
| GsuI | CTGGAG | 5 cut(s) | 128, 239, 379, 422, 527 |
| HaeIII | GGCC | 4 cut(s) | 158, 275, 620, 889 |
| HapII | CCGG | 3 cut(s) | 217, 621, 788 |
| HgaI | GACGC | 1 cut(s) | 540 |
| Hin1I | GRCGYC | 2 cut(s) | 551, 831 |
| Hin1II | CATG | 1 cut(s) | 188 |
| HincII | GTYRAC | 1 cut(s) | 603 |
| HindII | GTYRAC | 1 cut(s) | 603 |
| HinfI | GANTC | 3 cut(s) | 50, 114, 541 |
| HpaII | CCGG | 3 cut(s) | 217, 621, 788 |
| HphI | GGTGA | 2 cut(s) | 457, 508 |
| Hpy166II | GTNNAC | 3 cut(s) | 603, 736, 793 |
| Hpy188I | TCNGA | 5 cut(s) | 101, 708, 829, 918, 934 |
| Hpy188III | TCNNGA | 3 cut(s) | 76, 256, 545 |
| Hpy8I | GTNNAC | 3 cut(s) | 603, 736, 793 |
| Hpy99I | CGWCG | 1 cut(s) | 833 |
| HpyAV | CCTTC | 4 cut(s) | 169, 253, 418, 473 |
| HpyCH4IV | ACGT | 3 cut(s) | 372, 390, 831 |
| HpyCH4V | TGCA | 5 cut(s) | 304, 557, 640, 649, 784 |
| HpyF3I | CTNAG | 6 cut(s) | 233, 483, 606, 747, 801, 822 |
| HpySE526I | ACGT | 3 cut(s) | 372, 390, 831 |
| Hsp92I | GRCGYC | 2 cut(s) | 551, 831 |
| Hsp92II | CATG | 1 cut(s) | 188 |
| KpnI | GGTACC | 1 cut(s) | 879 |
| Ksp22I | TGATCA | 1 cut(s) | 309 |
| Kzo9I | GATC | 4 cut(s) | 309, 427, 459, 913 |
| LguI | GCTCTTC | 1 cut(s) | 32 |
| LmnI | GCTCC | 6 cut(s) | 5, 223, 298, 403, 530, 980 |
| LweI | GCATC | 5 cut(s) | 283, 316, 325, 793, 942 |
| MaeI | CTAG | 2 cut(s) | 24, 851 |
| MaeII | ACGT | 3 cut(s) | 372, 390, 831 |
| MalI | GATC | 4 cut(s) | 311, 429, 461, 915 |
| MbiI | CCGCTC | 6 cut(s) | 226, 367, 533, 777, 869, 902 |
| MboI | GATC | 4 cut(s) | 309, 427, 459, 913 |
| MboII | GAAGA | 3 cut(s) | 49, 511, 980 |
| MflI | RGATCY | 1 cut(s) | 459 |
| MhlI | GDGCHC | 4 cut(s) | 10, 125, 168, 896 |
| MluCI | AATT | 1 cut(s) | 71 |
| MlyI | GAGTC | 1 cut(s) | 44 |
| MmeI | TCCRAC | 1 cut(s) | 852 |
| MslI | CAYNNNNRTG | 1 cut(s) | 26 |
| MspA1I | CMGCKG | 4 cut(s) | 332, 560, 643, 949 |
| MspI | CCGG | 3 cut(s) | 217, 621, 788 |
| MspR9I | CCNGG | 3 cut(s) | 217, 218, 397 |
| MvaI | CCWGG | 1 cut(s) | 397 |
| NciI | CCSGG | 2 cut(s) | 217, 218 |
| NdeII | GATC | 4 cut(s) | 309, 427, 459, 913 |
| NlaIII | CATG | 1 cut(s) | 188 |
| NlaIV | GGNNCC | 3 cut(s) | 661, 877, 910 |
| NmeAIII | GCCGAG | 3 cut(s) | 134, 766, 915 |
| OliI | CACNNNNGTG | 1 cut(s) | 26 |
| PciSI | GCTCTTC | 1 cut(s) | 32 |
| PfeI | GAWTC | 2 cut(s) | 114, 541 |
| PflFI | GACNNNGTC | 2 cut(s) | 389, 671 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 669 |
| PleI | GAGTC | 1 cut(s) | 44 |
| PpsI | GAGTC | 1 cut(s) | 44 |
| PsiI | TTATAA | 1 cut(s) | 884 |
| Psp6I | CCWGG | 1 cut(s) | 395 |
| PspFI | CCCAGC | 1 cut(s) | 91 |
| PspGI | CCWGG | 1 cut(s) | 395 |
| PspN4I | GGNNCC | 3 cut(s) | 661, 877, 910 |
| PspPI | GGNCC | 2 cut(s) | 623, 909 |
| PstI | CTGCAG | 2 cut(s) | 559, 651 |
| PstNI | CAGNNNCTG | 2 cut(s) | 646, 949 |
| PsuI | RGATCY | 1 cut(s) | 459 |
| PsyI | GACNNNGTC | 2 cut(s) | 389, 671 |
| PvuII | CAGCTG | 2 cut(s) | 560, 643 |
| RsaI | GTAC | 2 cut(s) | 590, 877 |
| RsaNI | GTAC | 2 cut(s) | 589, 876 |
| RseI | CAYNNNNRTG | 1 cut(s) | 26 |
| SapI | GCTCTTC | 1 cut(s) | 32 |
| Sau3AI | GATC | 4 cut(s) | 309, 427, 459, 913 |
| Sau96I | GGNCC | 2 cut(s) | 623, 909 |
| SchI | GAGTC | 1 cut(s) | 44 |
| ScrFI | CCNGG | 3 cut(s) | 217, 218, 397 |
| SduI | GDGCHC | 4 cut(s) | 10, 125, 168, 896 |
| SfaNI | GCATC | 5 cut(s) | 283, 316, 325, 793, 942 |
| SfcI | CTRYAG | 3 cut(s) | 148, 555, 647 |
| SinI | GGWCC | 2 cut(s) | 623, 909 |
| SmaI | CCCGGG | 1 cut(s) | 218 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 26 |
| SpeI | ACTAGT | 1 cut(s) | 23 |
| Sse9I | AATT | 1 cut(s) | 71 |
| SspMI | CTAG | 2 cut(s) | 24, 851 |
| StyD4I | CCNGG | 3 cut(s) | 215, 216, 395 |
| StyI | CCWWGG | 1 cut(s) | 276 |
| TaiI | ACGT | 3 cut(s) | 375, 393, 834 |
| TaqI | TCGA | 2 cut(s) | 48, 246 |
| TaqII | GACCGA | 1 cut(s) | 926 |
| TasI | AATT | 1 cut(s) | 71 |
| TatI | WGTACW | 1 cut(s) | 588 |
| TauI | GCSGC | 6 cut(s) | 62, 229, 332, 440, 614, 949 |
| TfiI | GAWTC | 2 cut(s) | 114, 541 |
| TscAI | CASTG | 2 cut(s) | 473, 720 |
| TspDTI | ATGAA | 1 cut(s) | 981 |
| TspGWI | ACGGA | 1 cut(s) | 163 |
| TspMI | CCCGGG | 1 cut(s) | 216 |
| TspRI | CASTG | 2 cut(s) | 473, 720 |
| Tth111I | GACNNNGTC | 2 cut(s) | 389, 671 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 669 |
| VpaK11BI | GGWCC | 2 cut(s) | 623, 909 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 311, 422 |
| XapI | RAATTY | 1 cut(s) | 71 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 283 |
| XmaI | CCCGGG | 1 cut(s) | 216 |
| XspI | CTAG | 2 cut(s) | 24, 851 |
| ZraI | GACGTC | 1 cut(s) | 832 |