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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 3 cut(s) | 16, 43, 181 |
| AccII | CGCG | 1 cut(s) | 76 |
| AclWI | GGATC | 2 cut(s) | 193, 206 |
| AcoI | YGGCCR | 2 cut(s) | 312, 390 |
| AcsI | RAATTY | 1 cut(s) | 20 |
| AcyI | GRCGYC | 2 cut(s) | 158, 525 |
| AdeI | CACNNNGTG | 1 cut(s) | 494 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 268, 321, 379, 424 |
| AgsI | TTSAA | 2 cut(s) | 106, 139 |
| AjiI | CACGTC | 2 cut(s) | 328, 503 |
| AjnI | CCWGG | 3 cut(s) | 150, 171, 437 |
| AluBI | AGCT | 2 cut(s) | 304, 355 |
| AluI | AGCT | 2 cut(s) | 304, 355 |
| Alw21I | GWGCWC | 1 cut(s) | 490 |
| Alw26I | GTCTC | 1 cut(s) | 352 |
| Alw44I | GTGCAC | 1 cut(s) | 486 |
| AlwI | GGATC | 2 cut(s) | 193, 206 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 172 |
| AoxI | GGCC | 2 cut(s) | 312, 390 |
| ApaLI | GTGCAC | 1 cut(s) | 486 |
| ApeKI | GCWGC | 4 cut(s) | 57, 166, 284, 421 |
| ApoI | RAATTY | 1 cut(s) | 20 |
| AspLEI | GCGC | 1 cut(s) | 78 |
| AspS9I | GGNCC | 2 cut(s) | 479, 506 |
| AsuHPI | GGTGA | 1 cut(s) | 463 |
| AvaII | GGWCC | 2 cut(s) | 479, 506 |
| BaeGI | GKGCMC | 1 cut(s) | 490 |
| BalI | TGGCCA | 1 cut(s) | 314 |
| BamHI | GGATCC | 1 cut(s) | 198 |
| Bbv12I | GWGCWC | 1 cut(s) | 490 |
| BbvI | GCAGC | 4 cut(s) | 44, 178, 271, 433 |
| BccI | CCATC | 1 cut(s) | 39 |
| BciT130I | CCWGG | 3 cut(s) | 152, 173, 439 |
| BciVI | GTATCC | 1 cut(s) | 268 |
| BcoDI | GTCTC | 1 cut(s) | 352 |
| BfaI | CTAG | 4 cut(s) | 47, 62, 531, 547 |
| BfmI | CTRYAG | 2 cut(s) | 285, 419 |
| BfuI | GTATCC | 1 cut(s) | 268 |
| BisI | GCNGC | 8 cut(s) | 44, 58, 156, 167, 285, 393, 422, 435 |
| BlsI | GCNGC | 8 cut(s) | 45, 59, 157, 168, 286, 394, 423, 436 |
| Bme1390I | CCNGG | 3 cut(s) | 152, 173, 439 |
| Bme18I | GGWCC | 2 cut(s) | 479, 506 |
| BmgBI | CACGTC | 2 cut(s) | 328, 503 |
| BmgT120I | GGNCC | 2 cut(s) | 479, 506 |
| BmiI | GGNNCC | 1 cut(s) | 200 |
| BmrFI | CCNGG | 3 cut(s) | 152, 173, 439 |
| BmsI | GCATC | 2 cut(s) | 271, 280 |
| BpmI | CTGGAG | 2 cut(s) | 377, 398 |
| BpuEI | CTTGAG | 1 cut(s) | 230 |
| Bsa29I | ATCGAT | 1 cut(s) | 411 |
| BsaAI | YACGTR | 1 cut(s) | 494 |
| BsaBI | GATNNNNATC | 1 cut(s) | 413 |
| BsaHI | GRCGYC | 2 cut(s) | 158, 525 |
| BsaJI | CCNNGG | 4 cut(s) | 171, 202, 295, 396 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 332, 362 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 268, 321, 379, 424 |
| Bse1I | ACTGG | 2 cut(s) | 94, 465 |
| Bse8I | GATNNNNATC | 1 cut(s) | 413 |
| BseBI | CCWGG | 3 cut(s) | 152, 173, 439 |
| BseCI | ATCGAT | 1 cut(s) | 411 |
| BseDI | CCNNGG | 4 cut(s) | 171, 202, 295, 396 |
| BseJI | GATNNNNATC | 1 cut(s) | 413 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 268, 321, 379, 424 |
| BseMII | CTCAG | 1 cut(s) | 202 |
| BseNI | ACTGG | 2 cut(s) | 94, 465 |
| BseRI | GAGGAG | 2 cut(s) | 242, 461 |
| BseSI | GKGCMC | 1 cut(s) | 490 |
| BseXI | GCAGC | 4 cut(s) | 44, 178, 271, 433 |
| Bsh1236I | CGCG | 1 cut(s) | 76 |
| BshFI | GGCC | 2 cut(s) | 314, 392 |
| BshVI | ATCGAT | 1 cut(s) | 411 |
| BsiHKAI | GWGCWC | 1 cut(s) | 490 |
| BslFI | GGGAC | 2 cut(s) | 338, 355 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 268, 321, 379, 424 |
| BsmAI | GTCTC | 1 cut(s) | 352 |
| BsmFI | GGGAC | 2 cut(s) | 338, 355 |
| BsnI | GGCC | 2 cut(s) | 314, 392 |
| Bsp1286I | GDGCHC | 1 cut(s) | 490 |
| Bsp143I | GATC | 2 cut(s) | 198, 408 |
| BspANI | GGCC | 2 cut(s) | 314, 392 |
| BspCNI | CTCAG | 1 cut(s) | 201 |
| BspDI | ATCGAT | 1 cut(s) | 411 |
| BspFNI | CGCG | 1 cut(s) | 76 |
| BspLI | GGNNCC | 1 cut(s) | 200 |
| BspMAI | CTGCAG | 2 cut(s) | 289, 423 |
| BspPI | GGATC | 2 cut(s) | 193, 206 |
| BsrBI | CCGCTC | 3 cut(s) | 16, 43, 181 |
| BsrI | ACTGG | 2 cut(s) | 94, 465 |
| BssECI | CCNNGG | 4 cut(s) | 171, 202, 295, 396 |
| BssMI | GATC | 2 cut(s) | 198, 408 |
| BssNI | GRCGYC | 2 cut(s) | 158, 525 |
| BssT1I | CCWWGG | 2 cut(s) | 202, 396 |
| Bst2UI | CCWGG | 3 cut(s) | 152, 173, 439 |
| Bst4CI | ACNGT | 1 cut(s) | 11 |
| BstACI | GRCGYC | 2 cut(s) | 158, 525 |
| BstBAI | YACGTR | 1 cut(s) | 494 |
| BstC8I | GCNNGC | 4 cut(s) | 41, 302, 519, 523 |
| BstDEI | CTNAG | 3 cut(s) | 162, 188, 540 |
| BstDSI | CCRYGG | 1 cut(s) | 295 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 266, 377 |
| BstFNI | CGCG | 1 cut(s) | 76 |
| BstHHI | GCGC | 1 cut(s) | 78 |
| BstKTI | GATC | 2 cut(s) | 201, 411 |
| BstMAI | GTCTC | 1 cut(s) | 352 |
| BstMBI | GATC | 2 cut(s) | 198, 408 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 290, 527, 543 |
| BstNI | CCWGG | 3 cut(s) | 152, 173, 439 |
| BstNSI | RCATGY | 1 cut(s) | 370 |
| BstSCI | CCNGG | 3 cut(s) | 150, 171, 437 |
| BstSFI | CTRYAG | 2 cut(s) | 285, 419 |
| BstSLI | GKGCMC | 1 cut(s) | 490 |
| BstUI | CGCG | 1 cut(s) | 76 |
| BstV1I | GCAGC | 4 cut(s) | 44, 178, 271, 433 |
| BstX2I | RGATCY | 1 cut(s) | 198 |
| BstYI | RGATCY | 1 cut(s) | 198 |
| Bsu15I | ATCGAT | 1 cut(s) | 411 |
| BsuI | GTATCC | 1 cut(s) | 268 |
| BsuRI | GGCC | 2 cut(s) | 314, 392 |
| BsuTUI | ATCGAT | 1 cut(s) | 411 |
| BtgI | CCRYGG | 1 cut(s) | 295 |
| BtrI | CACGTC | 2 cut(s) | 328, 503 |
| BtsIMutI | CAGTG | 2 cut(s) | 16, 548 |
| Cac8I | GCNNGC | 4 cut(s) | 41, 302, 519, 523 |
| CaiI | CAGNNNCTG | 1 cut(s) | 172 |
| CfoI | GCGC | 1 cut(s) | 78 |
| Cfr13I | GGNCC | 2 cut(s) | 479, 506 |
| ClaI | ATCGAT | 1 cut(s) | 411 |
| CseI | GACGC | 3 cut(s) | 147, 514, 523 |
| CviAII | CATG | 2 cut(s) | 344, 367 |
| CviJI | RGCY | 8 cut(s) | 46, 57, 135, 169, 304, 314, 355, 392 |
| CviKI_1 | RGCY | 8 cut(s) | 46, 57, 135, 169, 304, 314, 355, 392 |
| DdeI | CTNAG | 3 cut(s) | 162, 188, 540 |
| DpnI | GATC | 2 cut(s) | 200, 410 |
| DpnII | GATC | 2 cut(s) | 198, 408 |
| DraIII | CACNNNGTG | 1 cut(s) | 494 |
| EaeI | YGGCCR | 2 cut(s) | 312, 390 |
| EciI | GGCGGA | 3 cut(s) | 239, 287, 513 |
| Eco130I | CCWWGG | 2 cut(s) | 202, 396 |
| Eco32I | GATATC | 1 cut(s) | 415 |
| Eco47I | GGWCC | 2 cut(s) | 479, 506 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 266, 377 |
| EcoRI | GAATTC | 1 cut(s) | 20 |
| EcoRII | CCWGG | 3 cut(s) | 150, 171, 437 |
| EcoRV | GATATC | 1 cut(s) | 415 |
| EcoT14I | CCWWGG | 2 cut(s) | 202, 396 |
| ErhI | CCWWGG | 2 cut(s) | 202, 396 |
| FaeI | CATG | 2 cut(s) | 347, 370 |
| FaiI | YATR | 2 cut(s) | 345, 368 |
| FaqI | GGGAC | 2 cut(s) | 338, 355 |
| FatI | CATG | 2 cut(s) | 343, 366 |
| FauI | CCCGC | 5 cut(s) | 9, 58, 174, 315, 417 |
| Fnu4HI | GCNGC | 8 cut(s) | 44, 58, 156, 167, 285, 393, 422, 435 |
| Fsp4HI | GCNGC | 8 cut(s) | 44, 58, 156, 167, 285, 393, 422, 435 |
| FspBI | CTAG | 4 cut(s) | 47, 62, 531, 547 |
| GlaI | GCGC | 1 cut(s) | 77 |
| GluI | GCNGC | 8 cut(s) | 44, 58, 156, 167, 285, 393, 422, 435 |
| GsuI | CTGGAG | 2 cut(s) | 377, 398 |
| HaeIII | GGCC | 2 cut(s) | 314, 392 |
| HgaI | GACGC | 3 cut(s) | 147, 514, 523 |
| HhaI | GCGC | 1 cut(s) | 78 |
| Hin1I | GRCGYC | 2 cut(s) | 158, 525 |
| Hin1II | CATG | 2 cut(s) | 347, 370 |
| Hin6I | GCGC | 1 cut(s) | 76 |
| HinP1I | GCGC | 1 cut(s) | 76 |
| HinfI | GANTC | 1 cut(s) | 428 |
| HphI | GGTGA | 1 cut(s) | 463 |
| Hpy166II | GTNNAC | 1 cut(s) | 488 |
| Hpy188III | TCNNGA | 1 cut(s) | 209 |
| Hpy8I | GTNNAC | 1 cut(s) | 488 |
| Hpy99I | CGWCG | 1 cut(s) | 530 |
| HpyAV | CCTTC | 2 cut(s) | 112, 458 |
| HpyCH4III | ACNGT | 1 cut(s) | 11 |
| HpyCH4IV | ACGT | 3 cut(s) | 327, 493, 502 |
| HpyCH4V | TGCA | 3 cut(s) | 287, 421, 488 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 290, 527, 543 |
| HpyF3I | CTNAG | 3 cut(s) | 162, 188, 540 |
| HpySE526I | ACGT | 3 cut(s) | 327, 493, 502 |
| Hsp92I | GRCGYC | 2 cut(s) | 158, 525 |
| Hsp92II | CATG | 2 cut(s) | 347, 370 |
| HspAI | GCGC | 1 cut(s) | 76 |
| Kzo9I | GATC | 2 cut(s) | 198, 408 |
| LmnI | GCTCC | 1 cut(s) | 358 |
| Lsp1109I | GCAGC | 4 cut(s) | 44, 178, 271, 433 |
| LweI | GCATC | 2 cut(s) | 271, 280 |
| MaeI | CTAG | 4 cut(s) | 47, 62, 531, 547 |
| MaeII | ACGT | 3 cut(s) | 327, 493, 502 |
| MaeIII | GTNAC | 1 cut(s) | 119 |
| MalI | GATC | 2 cut(s) | 200, 410 |
| MbiI | CCGCTC | 3 cut(s) | 16, 43, 181 |
| MboI | GATC | 2 cut(s) | 198, 408 |
| MboII | GAAGA | 1 cut(s) | 466 |
| MflI | RGATCY | 1 cut(s) | 198 |
| MhlI | GDGCHC | 1 cut(s) | 490 |
| MlsI | TGGCCA | 1 cut(s) | 314 |
| MluCI | AATT | 2 cut(s) | 20, 468 |
| MluNI | TGGCCA | 1 cut(s) | 314 |
| MlyI | GAGTC | 1 cut(s) | 437 |
| MnlI | CCTC | 9 cut(s) | 187, 220, 225, 231, 241, 373, 439, 442, 549 |
| Mox20I | TGGCCA | 1 cut(s) | 314 |
| MscI | TGGCCA | 1 cut(s) | 314 |
| MseI | TTAA | 1 cut(s) | 471 |
| Msp20I | TGGCCA | 1 cut(s) | 314 |
| MspA1I | CMGCKG | 3 cut(s) | 322, 424, 511 |
| MspR9I | CCNGG | 3 cut(s) | 152, 173, 439 |
| MvaI | CCWGG | 3 cut(s) | 152, 173, 439 |
| MvnI | CGCG | 1 cut(s) | 76 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 290, 527, 543 |
| NdeII | GATC | 2 cut(s) | 198, 408 |
| NlaIII | CATG | 2 cut(s) | 347, 370 |
| NlaIV | GGNNCC | 1 cut(s) | 200 |
| NmeAIII | GCCGAG | 1 cut(s) | 89 |
| NmuCI | GTSAC | 1 cut(s) | 119 |
| NspI | RCATGY | 1 cut(s) | 370 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 499 |
| PflFI | GACNNNGTC | 2 cut(s) | 344, 504 |
| PkrI | GCNGC | 8 cut(s) | 45, 59, 157, 168, 286, 394, 423, 436 |
| PleI | GAGTC | 1 cut(s) | 436 |
| PpsI | GAGTC | 1 cut(s) | 436 |
| Ppu21I | YACGTR | 1 cut(s) | 494 |
| Psp6I | CCWGG | 3 cut(s) | 150, 171, 437 |
| PspGI | CCWGG | 3 cut(s) | 150, 171, 437 |
| PspN4I | GGNNCC | 1 cut(s) | 200 |
| PspPI | GGNCC | 2 cut(s) | 479, 506 |
| PstI | CTGCAG | 2 cut(s) | 289, 423 |
| PstNI | CAGNNNCTG | 1 cut(s) | 172 |
| PsuI | RGATCY | 1 cut(s) | 198 |
| PsyI | GACNNNGTC | 2 cut(s) | 344, 504 |
| SaqAI | TTAA | 1 cut(s) | 471 |
| SatI | GCNGC | 8 cut(s) | 44, 58, 156, 167, 285, 393, 422, 435 |
| Sau3AI | GATC | 2 cut(s) | 198, 408 |
| Sau96I | GGNCC | 2 cut(s) | 479, 506 |
| SchI | GAGTC | 1 cut(s) | 437 |
| ScrFI | CCNGG | 3 cut(s) | 152, 173, 439 |
| SduI | GDGCHC | 1 cut(s) | 490 |
| SetI | ASST | 9 cut(s) | 208, 242, 252, 306, 330, 357, 453, 496, 505 |
| SfaNI | GCATC | 2 cut(s) | 271, 280 |
| SfcI | CTRYAG | 2 cut(s) | 285, 419 |
| SinI | GGWCC | 2 cut(s) | 479, 506 |
| SmlI | CTYRAG | 1 cut(s) | 209 |
| SmoI | CTYRAG | 1 cut(s) | 209 |
| Sse9I | AATT | 2 cut(s) | 20, 468 |
| SspMI | CTAG | 4 cut(s) | 47, 62, 531, 547 |
| StyD4I | CCNGG | 3 cut(s) | 150, 171, 437 |
| StyI | CCWWGG | 2 cut(s) | 202, 396 |
| TaaI | ACNGT | 1 cut(s) | 11 |
| TaiI | ACGT | 3 cut(s) | 330, 496, 505 |
| TaqI | TCGA | 1 cut(s) | 411 |
| TaqII | GACCGA | 1 cut(s) | 107 |
| TasI | AATT | 2 cut(s) | 20, 468 |
| TauI | GCSGC | 4 cut(s) | 46, 158, 395, 437 |
| Tru1I | TTAA | 1 cut(s) | 471 |
| Tru9I | TTAA | 1 cut(s) | 471 |
| TscAI | CASTG | 2 cut(s) | 16, 548 |
| TseFI | GTSAC | 1 cut(s) | 119 |
| TseI | GCWGC | 4 cut(s) | 57, 166, 284, 421 |
| Tsp45I | GTSAC | 1 cut(s) | 119 |
| TspRI | CASTG | 2 cut(s) | 16, 548 |
| Tth111I | GACNNNGTC | 2 cut(s) | 344, 504 |
| VneI | GTGCAC | 1 cut(s) | 486 |
| VpaK11BI | GGWCC | 2 cut(s) | 479, 506 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 266, 377 |
| XapI | RAATTY | 1 cut(s) | 20 |
| XceI | RCATGY | 1 cut(s) | 370 |
| XspI | CTAG | 4 cut(s) | 47, 62, 531, 547 |