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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 258, 1104 |
| Acc36I | ACCTGC | 1 cut(s) | 1048 |
| AccB1I | GGYRCC | 2 cut(s) | 363, 967 |
| AccBSI | CCGCTC | 3 cut(s) | 453, 666, 795 |
| AccII | CGCG | 4 cut(s) | 486, 707, 755, 781 |
| AccIII | TCCGGA | 1 cut(s) | 696 |
| AclWI | GGATC | 1 cut(s) | 83 |
| AcoI | YGGCCR | 3 cut(s) | 95, 722, 854 |
| AcuI | CTGAAG | 1 cut(s) | 498 |
| AcyI | GRCGYC | 5 cut(s) | 364, 568, 701, 968, 988 |
| AfaI | GTAC | 1 cut(s) | 1062 |
| AfeI | AGCGCT | 1 cut(s) | 90 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 218, 588, 731, 848, 1057, 1102, 1137 |
| AflIII | ACRYGT | 3 cut(s) | 554, 753, 950 |
| AgsI | TTSAA | 3 cut(s) | 154, 882, 957 |
| AjiI | CACGTC | 1 cut(s) | 1002 |
| AjnI | CCWGG | 2 cut(s) | 178, 737 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 415, 447 |
| AluBI | AGCT | 5 cut(s) | 518, 597, 714, 819, 1054 |
| AluI | AGCT | 5 cut(s) | 518, 597, 714, 819, 1054 |
| Alw26I | GTCTC | 6 cut(s) | 20, 266, 622, 642, 762, 1024 |
| AlwI | GGATC | 1 cut(s) | 83 |
| Ama87I | CYCGRG | 1 cut(s) | 935 |
| Aor13HI | TCCGGA | 1 cut(s) | 696 |
| Aor51HI | AGCGCT | 1 cut(s) | 90 |
| AoxI | GGCC | 9 cut(s) | 95, 100, 302, 320, 722, 854, 932, 938, 1086 |
| ApaI | GGGCCC | 2 cut(s) | 306, 936 |
| ApeKI | GCWGC | 7 cut(s) | 91, 576, 783, 786, 831, 1054, 1073 |
| AspLEI | GCGC | 8 cut(s) | 91, 234, 248, 366, 405, 488, 783, 970 |
| AsuC2I | CCSGG | 5 cut(s) | 99, 582, 936, 937, 1024 |
| AsuHPI | GGTGA | 1 cut(s) | 37 |
| AsuII | TTCGAA | 1 cut(s) | 337 |
| AvaI | CYCGRG | 1 cut(s) | 935 |
| AvaII | GGWCC | 5 cut(s) | 56, 136, 209, 735, 1106 |
| BaeGI | GKGCMC | 2 cut(s) | 306, 936 |
| BanI | GGYRCC | 2 cut(s) | 363, 967 |
| BanII | GRGCYC | 2 cut(s) | 306, 936 |
| BbsI | GAAGAC | 1 cut(s) | 910 |
| BbvI | GCAGC | 7 cut(s) | 78, 588, 770, 773, 843, 1041, 1085 |
| BccI | CCATC | 4 cut(s) | 25, 449, 733, 846 |
| BceAI | ACGGC | 4 cut(s) | 80, 269, 355, 509 |
| BciT130I | CCWGG | 2 cut(s) | 180, 739 |
| BcnI | CCSGG | 5 cut(s) | 99, 582, 936, 937, 1024 |
| BcoDI | GTCTC | 6 cut(s) | 20, 266, 622, 642, 762, 1024 |
| BfaI | CTAG | 1 cut(s) | 382 |
| BfmI | CTRYAG | 3 cut(s) | 41, 787, 1055 |
| BfoI | RGCGCY | 5 cut(s) | 92, 235, 249, 367, 971 |
| BfuAI | ACCTGC | 1 cut(s) | 1048 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 328 |
| Bme1390I | CCNGG | 7 cut(s) | 99, 180, 582, 739, 936, 937, 1024 |
| Bme18I | GGWCC | 5 cut(s) | 56, 136, 209, 735, 1106 |
| BmeT110I | CYCGRG | 1 cut(s) | 935 |
| BmgBI | CACGTC | 1 cut(s) | 1002 |
| BmrFI | CCNGG | 7 cut(s) | 99, 180, 582, 739, 936, 937, 1024 |
| BmsI | GCATC | 1 cut(s) | 107 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1036 |
| BpiI | GAAGAC | 1 cut(s) | 910 |
| BpmI | CTGGAG | 3 cut(s) | 256, 604, 760 |
| Bpu10I | CCTNAGC | 1 cut(s) | 598 |
| Bpu14I | TTCGAA | 1 cut(s) | 337 |
| BpuMI | CCSGG | 5 cut(s) | 99, 582, 936, 937, 1024 |
| BsaHI | GRCGYC | 5 cut(s) | 364, 568, 701, 968, 988 |
| BsaI | GGTCTC | 1 cut(s) | 622 |
| BsaJI | CCNNGG | 4 cut(s) | 179, 580, 705, 935 |
| BsaWI | WCCGGW | 1 cut(s) | 696 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 272, 302, 415, 445 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 218, 588, 731, 848, 1057, 1102, 1137 |
| Bse118I | RCCGGY | 1 cut(s) | 1008 |
| Bse1I | ACTGG | 3 cut(s) | 12, 193, 656 |
| BseAI | TCCGGA | 1 cut(s) | 696 |
| BseBI | CCWGG | 2 cut(s) | 180, 739 |
| BseDI | CCNNGG | 4 cut(s) | 179, 580, 705, 935 |
| BseGI | GGATG | 3 cut(s) | 36, 725, 857 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 218, 588, 731, 848, 1057, 1102, 1137 |
| BseMII | CTCAG | 2 cut(s) | 248, 1004 |
| BseNI | ACTGG | 3 cut(s) | 12, 193, 656 |
| BseSI | GKGCMC | 2 cut(s) | 306, 936 |
| BseX3I | CGGCCG | 1 cut(s) | 95 |
| BseXI | GCAGC | 7 cut(s) | 78, 588, 770, 773, 843, 1041, 1085 |
| BseYI | CCCAGC | 7 cut(s) | 217, 456, 870, 928, 1050, 1109, 1121 |
| BsgI | GTGCAG | 2 cut(s) | 67, 850 |
| Bsh1236I | CGCG | 4 cut(s) | 486, 707, 755, 781 |
| Bsh1285I | CGRYCG | 1 cut(s) | 98 |
| BshFI | GGCC | 9 cut(s) | 97, 102, 304, 322, 724, 856, 934, 940, 1088 |
| BshNI | GGYRCC | 2 cut(s) | 363, 967 |
| BsiEI | CGRYCG | 1 cut(s) | 98 |
| BsiHKCI | CYCGRG | 1 cut(s) | 935 |
| BsiSI | CCGG | 8 cut(s) | 98, 249, 582, 697, 729, 936, 1009, 1024 |
| BslFI | GGGAC | 4 cut(s) | 69, 748, 1006, 1092 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 218, 588, 731, 848, 1057, 1102, 1137 |
| BsmAI | GTCTC | 6 cut(s) | 20, 266, 622, 642, 762, 1024 |
| BsmBI | CGTCTC | 1 cut(s) | 762 |
| BsmFI | GGGAC | 4 cut(s) | 69, 748, 1006, 1092 |
| BsnI | GGCC | 9 cut(s) | 97, 102, 304, 322, 724, 856, 934, 940, 1088 |
| Bso31I | GGTCTC | 1 cut(s) | 622 |
| BsoBI | CYCGRG | 1 cut(s) | 935 |
| Bsp119I | TTCGAA | 1 cut(s) | 337 |
| Bsp120I | GGGCCC | 2 cut(s) | 302, 932 |
| Bsp1286I | GDGCHC | 2 cut(s) | 306, 936 |
| Bsp13I | TCCGGA | 1 cut(s) | 696 |
| Bsp143I | GATC | 2 cut(s) | 75, 776 |
| BspANI | GGCC | 9 cut(s) | 97, 102, 304, 322, 724, 856, 934, 940, 1088 |
| BspCNI | CTCAG | 2 cut(s) | 249, 1005 |
| BspEI | TCCGGA | 1 cut(s) | 696 |
| BspFNI | CGCG | 4 cut(s) | 486, 707, 755, 781 |
| BspMAI | CTGCAG | 2 cut(s) | 791, 1059 |
| BspMI | ACCTGC | 1 cut(s) | 1048 |
| BspPI | GGATC | 1 cut(s) | 83 |
| BspQI | GCTCTTC | 1 cut(s) | 587 |
| BspT104I | TTCGAA | 1 cut(s) | 337 |
| BspT107I | GGYRCC | 2 cut(s) | 363, 967 |
| BspTNI | GGTCTC | 1 cut(s) | 622 |
| BsrBI | CCGCTC | 3 cut(s) | 453, 666, 795 |
| BsrFI | RCCGGY | 1 cut(s) | 1008 |
| BsrI | ACTGG | 3 cut(s) | 12, 193, 656 |
| BssAI | RCCGGY | 1 cut(s) | 1008 |
| BssECI | CCNNGG | 4 cut(s) | 179, 580, 705, 935 |
| BssMI | GATC | 2 cut(s) | 75, 776 |
| BssNI | GRCGYC | 5 cut(s) | 364, 568, 701, 968, 988 |
| Bst2UI | CCWGG | 2 cut(s) | 180, 739 |
| Bst4CI | ACNGT | 1 cut(s) | 45 |
| Bst6I | CTCTTC | 3 cut(s) | 269, 442, 587 |
| BstACI | GRCGYC | 5 cut(s) | 364, 568, 701, 968, 988 |
| BstBI | TTCGAA | 1 cut(s) | 337 |
| BstDEI | CTNAG | 3 cut(s) | 257, 598, 1013 |
| BstDSI | CCRYGG | 1 cut(s) | 705 |
| BstF5I | GGATG | 3 cut(s) | 36, 725, 857 |
| BstFNI | CGCG | 4 cut(s) | 486, 707, 755, 781 |
| BstH2I | RGCGCY | 5 cut(s) | 92, 235, 249, 367, 971 |
| BstHHI | GCGC | 8 cut(s) | 91, 234, 248, 366, 405, 488, 783, 970 |
| BstKTI | GATC | 2 cut(s) | 78, 779 |
| BstMAI | GTCTC | 6 cut(s) | 20, 266, 622, 642, 762, 1024 |
| BstMBI | GATC | 2 cut(s) | 75, 776 |
| BstMCI | CGRYCG | 1 cut(s) | 98 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 45, 328, 400, 485, 792, 925, 1002, 1054 |
| BstNI | CCWGG | 2 cut(s) | 180, 739 |
| BstNSI | RCATGY | 2 cut(s) | 558, 954 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1036 |
| BstSCI | CCNGG | 7 cut(s) | 97, 178, 580, 737, 934, 935, 1022 |
| BstSFI | CTRYAG | 3 cut(s) | 41, 787, 1055 |
| BstSLI | GKGCMC | 2 cut(s) | 306, 936 |
| BstUI | CGCG | 4 cut(s) | 486, 707, 755, 781 |
| BstV1I | GCAGC | 7 cut(s) | 78, 588, 770, 773, 843, 1041, 1085 |
| BstV2I | GAAGAC | 1 cut(s) | 910 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 133 |
| BstZI | CGGCCG | 1 cut(s) | 95 |
| BsuRI | GGCC | 9 cut(s) | 97, 102, 304, 322, 724, 856, 934, 940, 1088 |
| BtgI | CCRYGG | 1 cut(s) | 705 |
| BtrI | CACGTC | 1 cut(s) | 1002 |
| BtsCI | GGATG | 3 cut(s) | 36, 725, 857 |
| BtsIMutI | CAGTG | 4 cut(s) | 50, 200, 381, 907 |
| BveI | ACCTGC | 1 cut(s) | 1048 |
| CfoI | GCGC | 8 cut(s) | 91, 234, 248, 366, 405, 488, 783, 970 |
| Cfr10I | RCCGGY | 1 cut(s) | 1008 |
| Cfr42I | CCGCGG | 1 cut(s) | 708 |
| Cfr9I | CCCGGG | 1 cut(s) | 935 |
| CseI | GACGC | 4 cut(s) | 557, 709, 744, 977 |
| Csp6I | GTAC | 1 cut(s) | 1061 |
| CviAII | CATG | 2 cut(s) | 555, 951 |
| CviQI | GTAC | 1 cut(s) | 1061 |
| DdeI | CTNAG | 3 cut(s) | 257, 598, 1013 |
| DinI | GGCGCC | 2 cut(s) | 365, 969 |
| DpnI | GATC | 2 cut(s) | 77, 778 |
| DpnII | GATC | 2 cut(s) | 75, 776 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 258, 1104 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 258, 1104 |
| EaeI | YGGCCR | 3 cut(s) | 95, 722, 854 |
| EagI | CGGCCG | 1 cut(s) | 95 |
| Eam1104I | CTCTTC | 3 cut(s) | 269, 442, 587 |
| EarI | CTCTTC | 3 cut(s) | 269, 442, 587 |
| EciI | GGCGGA | 5 cut(s) | 175, 670, 697, 831, 907 |
| EclXI | CGGCCG | 1 cut(s) | 95 |
| Eco24I | GRGCYC | 2 cut(s) | 306, 936 |
| Eco31I | GGTCTC | 1 cut(s) | 622 |
| Eco47I | GGWCC | 5 cut(s) | 56, 136, 209, 735, 1106 |
| Eco47III | AGCGCT | 1 cut(s) | 90 |
| Eco52I | CGGCCG | 1 cut(s) | 95 |
| Eco57I | CTGAAG | 1 cut(s) | 498 |
| Eco88I | CYCGRG | 1 cut(s) | 935 |
| EcoO109I | RGGNCCY | 5 cut(s) | 56, 302, 735, 932, 1106 |
| EcoRII | CCWGG | 2 cut(s) | 178, 737 |
| EcoT38I | GRGCYC | 2 cut(s) | 306, 936 |
| EgeI | GGCGCC | 2 cut(s) | 365, 969 |
| EheI | GGCGCC | 2 cut(s) | 365, 969 |
| Esp3I | CGTCTC | 1 cut(s) | 762 |
| FaeI | CATG | 2 cut(s) | 558, 954 |
| FaiI | YATR | 7 cut(s) | 401, 412, 481, 556, 826, 946, 952 |
| FaqI | GGGAC | 4 cut(s) | 69, 748, 1006, 1092 |
| FatI | CATG | 2 cut(s) | 554, 950 |
| FokI | GGATG | 3 cut(s) | 43, 712, 864 |
| FriOI | GRGCYC | 2 cut(s) | 306, 936 |
| FspBI | CTAG | 1 cut(s) | 382 |
| GlaI | GCGC | 8 cut(s) | 90, 233, 247, 365, 404, 487, 782, 969 |
| GsaI | CCCAGC | 7 cut(s) | 221, 460, 874, 932, 1054, 1113, 1125 |
| GsuI | CTGGAG | 3 cut(s) | 256, 604, 760 |
| HaeII | RGCGCY | 5 cut(s) | 92, 235, 249, 367, 971 |
| HaeIII | GGCC | 9 cut(s) | 97, 102, 304, 322, 724, 856, 934, 940, 1088 |
| HapII | CCGG | 8 cut(s) | 98, 249, 582, 697, 729, 936, 1009, 1024 |
| HgaI | GACGC | 4 cut(s) | 557, 709, 744, 977 |
| HhaI | GCGC | 8 cut(s) | 91, 234, 248, 366, 405, 488, 783, 970 |
| Hin1I | GRCGYC | 5 cut(s) | 364, 568, 701, 968, 988 |
| Hin1II | CATG | 2 cut(s) | 558, 954 |
| Hin6I | GCGC | 8 cut(s) | 89, 232, 246, 364, 403, 486, 781, 968 |
| HinP1I | GCGC | 8 cut(s) | 89, 232, 246, 364, 403, 486, 781, 968 |
| HindIII | AAGCTT | 1 cut(s) | 712 |
| HinfI | GANTC | 4 cut(s) | 259, 385, 838, 1116 |
| HpaII | CCGG | 8 cut(s) | 98, 249, 582, 697, 729, 936, 1009, 1024 |
| HphI | GGTGA | 1 cut(s) | 37 |
| Hpy166II | GTNNAC | 1 cut(s) | 379 |
| Hpy188I | TCNGA | 3 cut(s) | 80, 613, 1137 |
| Hpy188III | TCNNGA | 3 cut(s) | 265, 621, 697 |
| Hpy8I | GTNNAC | 1 cut(s) | 379 |
| Hpy99I | CGWCG | 5 cut(s) | 207, 495, 573, 1101, 1137 |
| HpyAV | CCTTC | 9 cut(s) | 75, 102, 312, 344, 412, 522, 918, 957, 1096 |
| HpyCH4III | ACNGT | 1 cut(s) | 45 |
| HpyCH4IV | ACGT | 1 cut(s) | 1001 |
| HpyCH4V | TGCA | 5 cut(s) | 48, 789, 831, 982, 1057 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 45, 328, 400, 485, 792, 925, 1002, 1054 |
| HpyF3I | CTNAG | 3 cut(s) | 257, 598, 1013 |
| HpySE526I | ACGT | 1 cut(s) | 1001 |
| Hsp92I | GRCGYC | 5 cut(s) | 364, 568, 701, 968, 988 |
| Hsp92II | CATG | 2 cut(s) | 558, 954 |
| HspAI | GCGC | 8 cut(s) | 89, 232, 246, 364, 403, 486, 781, 968 |
| KasI | GGCGCC | 2 cut(s) | 363, 967 |
| KflI | GGGWCCC | 2 cut(s) | 56, 1106 |
| Kpn2I | TCCGGA | 1 cut(s) | 696 |
| KroI | GCCGGC | 1 cut(s) | 1008 |
| KroNI | GCCGGC | 1 cut(s) | 1010 |
| KspI | CCGCGG | 1 cut(s) | 708 |
| Kzo9I | GATC | 2 cut(s) | 75, 776 |
| LguI | GCTCTTC | 1 cut(s) | 587 |
| LmnI | GCTCC | 5 cut(s) | 111, 221, 336, 768, 792 |
| Lsp1109I | GCAGC | 7 cut(s) | 78, 588, 770, 773, 843, 1041, 1085 |
| LweI | GCATC | 1 cut(s) | 107 |
| MaeI | CTAG | 1 cut(s) | 382 |
| MaeII | ACGT | 1 cut(s) | 1001 |
| MaeIII | GTNAC | 4 cut(s) | 174, 688, 989, 1142 |
| MalI | GATC | 2 cut(s) | 77, 778 |
| MbiI | CCGCTC | 3 cut(s) | 453, 666, 795 |
| MboI | GATC | 2 cut(s) | 75, 776 |
| MboII | GAAGA | 7 cut(s) | 175, 286, 327, 429, 604, 616, 915 |
| MfeI | CAATTG | 1 cut(s) | 497 |
| MhlI | GDGCHC | 2 cut(s) | 306, 936 |
| MluCI | AATT | 1 cut(s) | 497 |
| MluI | ACGCGT | 1 cut(s) | 753 |
| Mly113I | GGCGCC | 2 cut(s) | 364, 968 |
| MlyI | GAGTC | 4 cut(s) | 268, 379, 847, 1110 |
| MmeI | TCCRAC | 2 cut(s) | 746, 1115 |
| MroI | TCCGGA | 1 cut(s) | 696 |
| MroNI | GCCGGC | 1 cut(s) | 1008 |
| MseI | TTAA | 2 cut(s) | 716, 899 |
| MslI | CAYNNNNRTG | 3 cut(s) | 23, 559, 826 |
| MspA1I | CMGCKG | 5 cut(s) | 217, 707, 834, 1054, 1076 |
| MspI | CCGG | 8 cut(s) | 98, 249, 582, 697, 729, 936, 1009, 1024 |
| MspR9I | CCNGG | 7 cut(s) | 99, 180, 582, 739, 936, 937, 1024 |
| MunI | CAATTG | 1 cut(s) | 497 |
| MvaI | CCWGG | 2 cut(s) | 180, 739 |
| MvnI | CGCG | 4 cut(s) | 486, 707, 755, 781 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 45, 328, 400, 485, 792, 925, 1002, 1054 |
| NaeI | GCCGGC | 1 cut(s) | 1010 |
| NarI | GGCGCC | 2 cut(s) | 364, 968 |
| NciI | CCSGG | 5 cut(s) | 99, 582, 936, 937, 1024 |
| NdeII | GATC | 2 cut(s) | 75, 776 |
| NgoMIV | GCCGGC | 1 cut(s) | 1008 |
| NlaIII | CATG | 2 cut(s) | 558, 954 |
| NmeAIII | GCCGAG | 2 cut(s) | 420, 499 |
| NmuCI | GTSAC | 4 cut(s) | 174, 688, 989, 1142 |
| NspI | RCATGY | 2 cut(s) | 558, 954 |
| NspV | TTCGAA | 1 cut(s) | 337 |
| PciI | ACATGT | 2 cut(s) | 554, 950 |
| PciSI | GCTCTTC | 1 cut(s) | 587 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 557 |
| PdiI | GCCGGC | 1 cut(s) | 1010 |
| PflFI | GACNNNGTC | 1 cut(s) | 1131 |
| PleI | GAGTC | 4 cut(s) | 267, 379, 846, 1110 |
| PluTI | GGCGCC | 2 cut(s) | 367, 971 |
| PpsI | GAGTC | 4 cut(s) | 267, 379, 846, 1110 |
| PpuMI | RGGWCCY | 3 cut(s) | 56, 735, 1106 |
| PscI | ACATGT | 2 cut(s) | 554, 950 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1036 |
| Psp5II | RGGWCCY | 3 cut(s) | 56, 735, 1106 |
| Psp6I | CCWGG | 2 cut(s) | 178, 737 |
| PspFI | CCCAGC | 7 cut(s) | 217, 456, 870, 928, 1050, 1109, 1121 |
| PspGI | CCWGG | 2 cut(s) | 178, 737 |
| PspOMI | GGGCCC | 2 cut(s) | 302, 932 |
| PspPPI | RGGWCCY | 3 cut(s) | 56, 735, 1106 |
| PstI | CTGCAG | 2 cut(s) | 791, 1059 |
| PsyI | GACNNNGTC | 1 cut(s) | 1131 |
| PvuII | CAGCTG | 1 cut(s) | 1054 |
| RsaI | GTAC | 1 cut(s) | 1062 |
| RsaNI | GTAC | 1 cut(s) | 1061 |
| RseI | CAYNNNNRTG | 3 cut(s) | 23, 559, 826 |
| SacII | CCGCGG | 1 cut(s) | 708 |
| SapI | GCTCTTC | 1 cut(s) | 587 |
| SaqAI | TTAA | 2 cut(s) | 716, 899 |
| Sau3AI | GATC | 2 cut(s) | 75, 776 |
| SchI | GAGTC | 4 cut(s) | 268, 379, 847, 1110 |
| ScrFI | CCNGG | 7 cut(s) | 99, 180, 582, 739, 936, 937, 1024 |
| SduI | GDGCHC | 2 cut(s) | 306, 936 |
| SfaNI | GCATC | 1 cut(s) | 107 |
| SfcI | CTRYAG | 3 cut(s) | 41, 787, 1055 |
| SfoI | GGCGCC | 2 cut(s) | 365, 969 |
| Sfr303I | CCGCGG | 1 cut(s) | 708 |
| SfuI | TTCGAA | 1 cut(s) | 337 |
| SgrBI | CCGCGG | 1 cut(s) | 708 |
| SinI | GGWCC | 5 cut(s) | 56, 136, 209, 735, 1106 |
| SmaI | CCCGGG | 1 cut(s) | 937 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 23, 559, 826 |
| SrfI | GCCCGGGC | 1 cut(s) | 937 |
| Sse9I | AATT | 1 cut(s) | 497 |
| SspDI | GGCGCC | 2 cut(s) | 363, 967 |
| SspMI | CTAG | 1 cut(s) | 382 |
| StyD4I | CCNGG | 7 cut(s) | 97, 178, 580, 737, 934, 935, 1022 |
| TaaI | ACNGT | 1 cut(s) | 45 |
| TaiI | ACGT | 1 cut(s) | 1004 |
| TaqI | TCGA | 2 cut(s) | 337, 571 |
| TaqII | GACCGA | 1 cut(s) | 928 |
| TasI | AATT | 1 cut(s) | 497 |
| Tru1I | TTAA | 2 cut(s) | 716, 899 |
| Tru9I | TTAA | 2 cut(s) | 716, 899 |
| TscAI | CASTG | 4 cut(s) | 50, 200, 381, 914 |
| TseFI | GTSAC | 4 cut(s) | 174, 688, 989, 1142 |
| TseI | GCWGC | 7 cut(s) | 91, 576, 783, 786, 831, 1054, 1073 |
| Tsp45I | GTSAC | 4 cut(s) | 174, 688, 989, 1142 |
| TspDTI | ATGAA | 2 cut(s) | 764, 877 |
| TspGWI | ACGGA | 1 cut(s) | 1114 |
| TspMI | CCCGGG | 1 cut(s) | 935 |
| TspRI | CASTG | 4 cut(s) | 50, 200, 381, 914 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1131 |
| VpaK11BI | GGWCC | 5 cut(s) | 56, 136, 209, 735, 1106 |
| XceI | RCATGY | 2 cut(s) | 558, 954 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 19 |
| XmaI | CCCGGG | 1 cut(s) | 935 |
| XspI | CTAG | 1 cut(s) | 382 |