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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 344 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1501 |
| AatII | GACGTC | 1 cut(s) | 1953 |
| Acc36I | ACCTGC | 2 cut(s) | 344, 978 |
| AccB1I | GGYRCC | 2 cut(s) | 335, 523 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 159, 541, 588 |
| AccBSI | CCGCTC | 7 cut(s) | 884, 1357, 1675, 1702, 1915, 1993, 2044 |
| AccI | GTMKAC | 2 cut(s) | 345, 966 |
| AccII | CGCG | 9 cut(s) | 62, 187, 237, 1101, 1106, 1337, 1735, 1956, 2004 |
| AclWI | GGATC | 4 cut(s) | 532, 992, 1005, 1326 |
| AcoI | YGGCCR | 5 cut(s) | 603, 1048, 1308, 1338, 1971 |
| AcsI | RAATTY | 2 cut(s) | 551, 754 |
| AcuI | CTGAAG | 2 cut(s) | 131, 1747 |
| AcyI | GRCGYC | 2 cut(s) | 1817, 1950 |
| AfaI | GTAC | 1 cut(s) | 818 |
| AfeI | AGCGCT | 1 cut(s) | 245 |
| AflIII | ACRYGT | 3 cut(s) | 48, 1104, 2002 |
| AgsI | TTSAA | 3 cut(s) | 1031, 1112, 1397 |
| AjiI | CACGTC | 2 cut(s) | 49, 1513 |
| AjnI | CCWGG | 4 cut(s) | 121, 540, 824, 1869 |
| AleI | CACNNNNGTG | 1 cut(s) | 1374 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1664, 1696 |
| AluBI | AGCT | 8 cut(s) | 198, 424, 467, 745, 1630, 1767, 1846, 1963 |
| AluI | AGCT | 8 cut(s) | 198, 424, 467, 745, 1630, 1767, 1846, 1963 |
| Alw21I | GWGCWC | 1 cut(s) | 200 |
| Alw26I | GTCTC | 6 cut(s) | 1196, 1263, 1509, 1871, 1891, 2011 |
| AlwI | GGATC | 4 cut(s) | 532, 992, 1005, 1326 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 541 |
| Ama87I | CYCGRG | 1 cut(s) | 1199 |
| Aor51HI | AGCGCT | 1 cut(s) | 245 |
| ApaI | GGGCCC | 1 cut(s) | 1549 |
| ApeKI | GCWGC | 8 cut(s) | 218, 221, 263, 424, 476, 699, 1574, 2035 |
| ApoI | RAATTY | 2 cut(s) | 551, 754 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 660 |
| AsuC2I | CCSGG | 7 cut(s) | 40, 411, 631, 1083, 1127, 1342, 1831 |
| AsuHPI | GGTGA | 7 cut(s) | 221, 430, 1004, 1204, 1280, 1456, 1543 |
| AsuII | TTCGAA | 1 cut(s) | 1580 |
| AsuNHI | GCTAGC | 1 cut(s) | 266 |
| AvaI | CYCGRG | 1 cut(s) | 1199 |
| AvaII | GGWCC | 6 cut(s) | 125, 786, 1123, 1299, 1379, 1452 |
| BaeGI | GKGCMC | 2 cut(s) | 528, 1549 |
| BalI | TGGCCA | 2 cut(s) | 605, 1973 |
| BamHI | GGATCC | 1 cut(s) | 997 |
| BanI | GGYRCC | 2 cut(s) | 335, 523 |
| BanII | GRGCYC | 2 cut(s) | 200, 1549 |
| BauI | CACGAG | 1 cut(s) | 485 |
| BbsI | GAAGAC | 1 cut(s) | 1589 |
| Bbv12I | GWGCWC | 1 cut(s) | 200 |
| BbvCI | CCTCAGC | 1 cut(s) | 1847 |
| BbvI | GCAGC | 8 cut(s) | 205, 208, 250, 411, 463, 686, 1561, 2022 |
| BccI | CCATC | 6 cut(s) | 161, 326, 1268, 1575, 1698, 1982 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 325, 359 |
| BciT130I | CCWGG | 4 cut(s) | 123, 542, 826, 1871 |
| BcnI | CCSGG | 7 cut(s) | 40, 411, 631, 1083, 1127, 1342, 1831 |
| BcoDI | GTCTC | 6 cut(s) | 1196, 1263, 1509, 1871, 1891, 2011 |
| BfaI | CTAG | 4 cut(s) | 131, 231, 267, 1631 |
| BfmI | CTRYAG | 2 cut(s) | 801, 2036 |
| BfoI | RGCGCY | 7 cut(s) | 247, 694, 740, 1214, 1335, 1478, 1492 |
| BfuAI | ACCTGC | 2 cut(s) | 344, 978 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1571 |
| BlpI | GCTNAGC | 1 cut(s) | 1214 |
| Bme18I | GGWCC | 6 cut(s) | 125, 786, 1123, 1299, 1379, 1452 |
| BmeT110I | CYCGRG | 1 cut(s) | 1199 |
| BmgBI | CACGTC | 2 cut(s) | 49, 1513 |
| BmsI | GCATC | 5 cut(s) | 588, 1230, 1236, 1350, 1600 |
| BmtI | GCTAGC | 1 cut(s) | 270 |
| BpiI | GAAGAC | 1 cut(s) | 1589 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 437, 469, 1619, 1651 |
| BpmI | CTGGAG | 3 cut(s) | 518, 1499, 1853 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1847, 2055 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1214 |
| Bpu14I | TTCGAA | 1 cut(s) | 1580 |
| BpuEI | CTTGAG | 2 cut(s) | 184, 739 |
| BpuMI | CCSGG | 7 cut(s) | 40, 411, 631, 1083, 1127, 1342, 1831 |
| BsaHI | GRCGYC | 2 cut(s) | 1817, 1950 |
| BsaI | GGTCTC | 1 cut(s) | 1871 |
| BsaWI | WCCGGW | 1 cut(s) | 1231 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1142, 1172, 1515, 1545, 1664, 1694 |
| Bse118I | RCCGGY | 3 cut(s) | 726, 1310, 1399 |
| Bse1I | ACTGG | 7 cut(s) | 782, 952, 1048, 1219, 1255, 1436, 1905 |
| Bse3DI | GCAATG | 2 cut(s) | 86, 177 |
| BseBI | CCWGG | 4 cut(s) | 123, 542, 826, 1871 |
| BseGI | GGATG | 5 cut(s) | 153, 369, 448, 1279, 1365 |
| BseMI | GCAATG | 2 cut(s) | 86, 177 |
| BseMII | CTCAG | 5 cut(s) | 342, 855, 1397, 1491, 1838 |
| BseNI | ACTGG | 7 cut(s) | 782, 952, 1048, 1219, 1255, 1436, 1905 |
| BseSI | GKGCMC | 2 cut(s) | 528, 1549 |
| BseX3I | CGGCCG | 2 cut(s) | 1308, 1338 |
| BseXI | GCAGC | 8 cut(s) | 205, 208, 250, 411, 463, 686, 1561, 2022 |
| BseYI | CCCAGC | 4 cut(s) | 463, 1179, 1460, 1705 |
| BsgI | GTGCAG | 1 cut(s) | 1310 |
| Bsh1236I | CGCG | 9 cut(s) | 62, 187, 237, 1101, 1106, 1337, 1735, 1956, 2004 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1311, 1341 |
| BshNI | GGYRCC | 2 cut(s) | 335, 523 |
| BsiEI | CGRYCG | 2 cut(s) | 1311, 1341 |
| BsiHKAI | GWGCWC | 1 cut(s) | 200 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1199 |
| BslFI | GGGAC | 6 cut(s) | 176, 776, 799, 900, 1312, 1813 |
| BsmAI | GTCTC | 6 cut(s) | 1196, 1263, 1509, 1871, 1891, 2011 |
| BsmBI | CGTCTC | 2 cut(s) | 1196, 2011 |
| BsmFI | GGGAC | 6 cut(s) | 176, 776, 799, 900, 1312, 1813 |
| Bso31I | GGTCTC | 1 cut(s) | 1871 |
| BsoBI | CYCGRG | 1 cut(s) | 1199 |
| Bsp119I | TTCGAA | 1 cut(s) | 1580 |
| Bsp120I | GGGCCC | 1 cut(s) | 1545 |
| Bsp1286I | GDGCHC | 3 cut(s) | 200, 528, 1549 |
| Bsp143I | GATC | 5 cut(s) | 537, 747, 997, 1318, 2025 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1214 |
| Bsp19I | CCATGG | 1 cut(s) | 1119 |
| Bsp68I | TCGCGA | 1 cut(s) | 1101 |
| BspCNI | CTCAG | 5 cut(s) | 341, 856, 1396, 1492, 1839 |
| BspFNI | CGCG | 9 cut(s) | 62, 187, 237, 1101, 1106, 1337, 1735, 1956, 2004 |
| BspMAI | CTGCAG | 1 cut(s) | 2040 |
| BspMI | ACCTGC | 2 cut(s) | 344, 978 |
| BspOI | GCTAGC | 1 cut(s) | 270 |
| BspPI | GGATC | 4 cut(s) | 532, 992, 1005, 1326 |
| BspT104I | TTCGAA | 1 cut(s) | 1580 |
| BspT107I | GGYRCC | 2 cut(s) | 335, 523 |
| BspTNI | GGTCTC | 1 cut(s) | 1871 |
| BsrBI | CCGCTC | 7 cut(s) | 884, 1357, 1675, 1702, 1915, 1993, 2044 |
| BsrDI | GCAATG | 2 cut(s) | 86, 177 |
| BsrFI | RCCGGY | 3 cut(s) | 726, 1310, 1399 |
| BsrI | ACTGG | 7 cut(s) | 782, 952, 1048, 1219, 1255, 1436, 1905 |
| BssAI | RCCGGY | 3 cut(s) | 726, 1310, 1399 |
| BssMI | GATC | 5 cut(s) | 537, 747, 997, 1318, 2025 |
| BssNI | GRCGYC | 2 cut(s) | 1817, 1950 |
| BssSI | CACGAG | 1 cut(s) | 485 |
| BssT1I | CCWWGG | 2 cut(s) | 1119, 2085 |
| Bst2BI | CACGAG | 1 cut(s) | 485 |
| Bst2UI | CCWGG | 4 cut(s) | 123, 542, 826, 1871 |
| Bst4CI | ACNGT | 6 cut(s) | 379, 649, 809, 1189, 1288, 1656 |
| Bst6I | CTCTTC | 3 cut(s) | 279, 1512, 1691 |
| BstACI | GRCGYC | 2 cut(s) | 1817, 1950 |
| BstBI | TTCGAA | 1 cut(s) | 1580 |
| BstDEI | CTNAG | 7 cut(s) | 328, 864, 1214, 1383, 1500, 1847, 2055 |
| BstDSI | CCRYGG | 4 cut(s) | 178, 1119, 1335, 1954 |
| BstF5I | GGATG | 5 cut(s) | 153, 369, 448, 1279, 1365 |
| BstFNI | CGCG | 9 cut(s) | 62, 187, 237, 1101, 1106, 1337, 1735, 1956, 2004 |
| BstH2I | RGCGCY | 7 cut(s) | 247, 694, 740, 1214, 1335, 1478, 1492 |
| BstKTI | GATC | 5 cut(s) | 540, 750, 1000, 1321, 2028 |
| BstMAI | GTCTC | 6 cut(s) | 1196, 1263, 1509, 1871, 1891, 2011 |
| BstMBI | GATC | 5 cut(s) | 537, 747, 997, 1318, 2025 |
| BstMCI | CGRYCG | 2 cut(s) | 1311, 1341 |
| BstNI | CCWGG | 4 cut(s) | 123, 542, 826, 1871 |
| BstSFI | CTRYAG | 2 cut(s) | 801, 2036 |
| BstSLI | GKGCMC | 2 cut(s) | 528, 1549 |
| BstUI | CGCG | 9 cut(s) | 62, 187, 237, 1101, 1106, 1337, 1735, 1956, 2004 |
| BstV1I | GCAGC | 8 cut(s) | 205, 208, 250, 411, 463, 686, 1561, 2022 |
| BstV2I | GAAGAC | 1 cut(s) | 1589 |
| BstX2I | RGATCY | 2 cut(s) | 537, 997 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1376 |
| BstYI | RGATCY | 2 cut(s) | 537, 997 |
| BstZI | CGGCCG | 2 cut(s) | 1308, 1338 |
| BtgI | CCRYGG | 4 cut(s) | 178, 1119, 1335, 1954 |
| BtrI | CACGTC | 2 cut(s) | 49, 1513 |
| BtsCI | GGATG | 5 cut(s) | 153, 369, 448, 1279, 1365 |
| BtsI | GCAGTG | 1 cut(s) | 34 |
| BtsIMutI | CAGTG | 3 cut(s) | 34, 1293, 1443 |
| BtuMI | TCGCGA | 1 cut(s) | 1101 |
| BveI | ACCTGC | 2 cut(s) | 344, 978 |
| CaiI | CAGNNNCTG | 1 cut(s) | 541 |
| Cfr10I | RCCGGY | 3 cut(s) | 726, 1310, 1399 |
| Cfr42I | CCGCGG | 2 cut(s) | 1338, 1957 |
| CseI | GACGC | 6 cut(s) | 80, 176, 1112, 1213, 1806, 1993 |
| Csp6I | GTAC | 1 cut(s) | 817 |
| CviAII | CATG | 6 cut(s) | 104, 607, 769, 1120, 1156, 1799 |
| CviQI | GTAC | 1 cut(s) | 817 |
| DdeI | CTNAG | 7 cut(s) | 328, 864, 1214, 1383, 1500, 1847, 2055 |
| DpnI | GATC | 5 cut(s) | 539, 749, 999, 1320, 2027 |
| DpnII | GATC | 5 cut(s) | 537, 747, 997, 1318, 2025 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1501 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1501 |
| EaeI | YGGCCR | 5 cut(s) | 603, 1048, 1308, 1338, 1971 |
| EagI | CGGCCG | 2 cut(s) | 1308, 1338 |
| Eam1104I | CTCTTC | 3 cut(s) | 279, 1512, 1691 |
| EarI | CTCTTC | 3 cut(s) | 279, 1512, 1691 |
| Ecl136II | GAGCTC | 1 cut(s) | 198 |
| EclXI | CGGCCG | 2 cut(s) | 1308, 1338 |
| Eco130I | CCWWGG | 2 cut(s) | 1119, 2085 |
| Eco147I | AGGCCT | 1 cut(s) | 452 |
| Eco24I | GRGCYC | 2 cut(s) | 200, 1549 |
| Eco31I | GGTCTC | 1 cut(s) | 1871 |
| Eco47I | GGWCC | 6 cut(s) | 125, 786, 1123, 1299, 1379, 1452 |
| Eco47III | AGCGCT | 1 cut(s) | 245 |
| Eco52I | CGGCCG | 2 cut(s) | 1308, 1338 |
| Eco53kI | GAGCTC | 1 cut(s) | 198 |
| Eco57I | CTGAAG | 2 cut(s) | 131, 1747 |
| Eco88I | CYCGRG | 1 cut(s) | 1199 |
| EcoICRI | GAGCTC | 1 cut(s) | 198 |
| EcoO109I | RGGNCCY | 5 cut(s) | 125, 641, 786, 1299, 1545 |
| EcoRII | CCWGG | 4 cut(s) | 121, 540, 824, 1869 |
| EcoT14I | CCWWGG | 2 cut(s) | 1119, 2085 |
| EcoT38I | GRGCYC | 2 cut(s) | 200, 1549 |
| ErhI | CCWWGG | 2 cut(s) | 1119, 2085 |
| Esp3I | CGTCTC | 2 cut(s) | 1196, 2011 |
| FaeI | CATG | 6 cut(s) | 107, 610, 772, 1123, 1159, 1802 |
| FaqI | GGGAC | 6 cut(s) | 176, 776, 799, 900, 1312, 1813 |
| FatI | CATG | 6 cut(s) | 103, 606, 768, 1119, 1155, 1798 |
| FblI | GTMKAC | 2 cut(s) | 345, 966 |
| FokI | GGATG | 5 cut(s) | 140, 376, 455, 1286, 1372 |
| FriOI | GRGCYC | 2 cut(s) | 200, 1549 |
| FspBI | CTAG | 4 cut(s) | 131, 231, 267, 1631 |
| GsaI | CCCAGC | 4 cut(s) | 467, 1183, 1464, 1709 |
| GsuI | CTGGAG | 3 cut(s) | 518, 1499, 1853 |
| HaeII | RGCGCY | 7 cut(s) | 247, 694, 740, 1214, 1335, 1478, 1492 |
| HgaI | GACGC | 6 cut(s) | 80, 176, 1112, 1213, 1806, 1993 |
| Hin1I | GRCGYC | 2 cut(s) | 1817, 1950 |
| Hin1II | CATG | 6 cut(s) | 107, 610, 772, 1123, 1159, 1802 |
| HincII | GTYRAC | 3 cut(s) | 346, 382, 967 |
| HindII | GTYRAC | 3 cut(s) | 346, 382, 967 |
| HinfI | GANTC | 9 cut(s) | 35, 83, 311, 457, 721, 764, 1096, 1502, 1634 |
| HphI | GGTGA | 7 cut(s) | 221, 430, 1004, 1204, 1280, 1456, 1543 |
| Hpy166II | GTNNAC | 6 cut(s) | 346, 382, 484, 715, 967, 1195 |
| Hpy188III | TCNNGA | 7 cut(s) | 131, 191, 485, 535, 751, 1100, 1508 |
| Hpy8I | GTNNAC | 6 cut(s) | 346, 382, 484, 715, 967, 1195 |
| Hpy99I | CGWCG | 6 cut(s) | 242, 347, 350, 1106, 1744, 1822 |
| HpyAV | CCTTC | 9 cut(s) | 442, 799, 833, 1345, 1381, 1528, 1555, 1661, 1771 |
| HpyCH4III | ACNGT | 6 cut(s) | 379, 649, 809, 1189, 1288, 1656 |
| HpyCH4IV | ACGT | 8 cut(s) | 9, 48, 165, 398, 512, 563, 1512, 1950 |
| HpyCH4V | TGCA | 7 cut(s) | 107, 702, 1291, 1652, 1798, 1946, 2038 |
| HpyF3I | CTNAG | 7 cut(s) | 328, 864, 1214, 1383, 1500, 1847, 2055 |
| HpySE526I | ACGT | 8 cut(s) | 9, 48, 165, 398, 512, 563, 1512, 1950 |
| Hsp92I | GRCGYC | 2 cut(s) | 1817, 1950 |
| Hsp92II | CATG | 6 cut(s) | 107, 610, 772, 1123, 1159, 1802 |
| KflI | GGGWCCC | 1 cut(s) | 1299 |
| KroI | GCCGGC | 2 cut(s) | 726, 1310 |
| KroNI | GCCGGC | 2 cut(s) | 728, 1312 |
| KspI | CCGCGG | 2 cut(s) | 1338, 1957 |
| Kzo9I | GATC | 5 cut(s) | 537, 747, 997, 1318, 2025 |
| LmnI | GCTCC | 8 cut(s) | 278, 734, 1354, 1672, 1990, 2017, 2041, 2117 |
| Lsp1109I | GCAGC | 8 cut(s) | 205, 208, 250, 411, 463, 686, 1561, 2022 |
| LweI | GCATC | 5 cut(s) | 588, 1230, 1236, 1350, 1600 |
| MaeI | CTAG | 4 cut(s) | 131, 231, 267, 1631 |
| MaeII | ACGT | 8 cut(s) | 9, 48, 165, 398, 512, 563, 1512, 1950 |
| MaeIII | GTNAC | 4 cut(s) | 1417, 1444, 1937, 1982 |
| MalI | GATC | 5 cut(s) | 539, 749, 999, 1320, 2027 |
| MbiI | CCGCTC | 7 cut(s) | 884, 1357, 1675, 1702, 1915, 1993, 2044 |
| MboI | GATC | 5 cut(s) | 537, 747, 997, 1318, 2025 |
| MboII | GAAGA | 8 cut(s) | 296, 848, 1418, 1529, 1570, 1594, 1678, 1865 |
| MfeI | CAATTG | 1 cut(s) | 1746 |
| MflI | RGATCY | 2 cut(s) | 537, 997 |
| MhlI | GDGCHC | 3 cut(s) | 200, 528, 1549 |
| MlsI | TGGCCA | 2 cut(s) | 605, 1973 |
| MluCI | AATT | 6 cut(s) | 551, 754, 1031, 1141, 1746, 2079 |
| MluI | ACGCGT | 2 cut(s) | 1104, 2002 |
| MluNI | TGGCCA | 2 cut(s) | 605, 1973 |
| MlyI | GAGTC | 5 cut(s) | 730, 758, 1105, 1511, 1628 |
| MmeI | TCCRAC | 2 cut(s) | 895, 1995 |
| Mox20I | TGGCCA | 2 cut(s) | 605, 1973 |
| MroNI | GCCGGC | 2 cut(s) | 726, 1310 |
| MroXI | GAANNNNTTC | 1 cut(s) | 660 |
| MscI | TGGCCA | 2 cut(s) | 605, 1973 |
| MseI | TTAA | 3 cut(s) | 858, 977, 1019 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1266, 1374 |
| Msp20I | TGGCCA | 2 cut(s) | 605, 1973 |
| MspA1I | CMGCKG | 7 cut(s) | 218, 278, 467, 520, 1337, 1460, 1956 |
| MunI | CAATTG | 1 cut(s) | 1746 |
| MvaI | CCWGG | 4 cut(s) | 123, 542, 826, 1871 |
| MvnI | CGCG | 9 cut(s) | 62, 187, 237, 1101, 1106, 1337, 1735, 1956, 2004 |
| NaeI | GCCGGC | 2 cut(s) | 728, 1312 |
| NciI | CCSGG | 7 cut(s) | 40, 411, 631, 1083, 1127, 1342, 1831 |
| NcoI | CCATGG | 1 cut(s) | 1119 |
| NdeII | GATC | 5 cut(s) | 537, 747, 997, 1318, 2025 |
| NgoMIV | GCCGGC | 2 cut(s) | 726, 1310 |
| NheI | GCTAGC | 1 cut(s) | 266 |
| NlaIII | CATG | 6 cut(s) | 107, 610, 772, 1123, 1159, 1802 |
| NmeAIII | GCCGAG | 3 cut(s) | 719, 1189, 1669 |
| NmuCI | GTSAC | 4 cut(s) | 1417, 1444, 1937, 1982 |
| NruI | TCGCGA | 1 cut(s) | 1101 |
| NspV | TTCGAA | 1 cut(s) | 1580 |
| OliI | CACNNNNGTG | 1 cut(s) | 1374 |
| PaqCI | CACCTGC | 1 cut(s) | 344 |
| PceI | AGGCCT | 1 cut(s) | 452 |
| PdiI | GCCGGC | 2 cut(s) | 728, 1312 |
| PdmI | GAANNNNTTC | 1 cut(s) | 660 |
| PfeI | GAWTC | 4 cut(s) | 35, 83, 311, 457 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 159, 541, 588 |
| PfoI | TCCNGGA | 1 cut(s) | 1829 |
| PleI | GAGTC | 5 cut(s) | 729, 758, 1104, 1510, 1628 |
| PpsI | GAGTC | 5 cut(s) | 729, 758, 1104, 1510, 1628 |
| PpuMI | RGGWCCY | 3 cut(s) | 125, 786, 1299 |
| Psp124BI | GAGCTC | 1 cut(s) | 200 |
| Psp5II | RGGWCCY | 3 cut(s) | 125, 786, 1299 |
| Psp6I | CCWGG | 4 cut(s) | 121, 540, 824, 1869 |
| PspFI | CCCAGC | 4 cut(s) | 463, 1179, 1460, 1705 |
| PspGI | CCWGG | 4 cut(s) | 121, 540, 824, 1869 |
| PspOMI | GGGCCC | 1 cut(s) | 1545 |
| PspPPI | RGGWCCY | 3 cut(s) | 125, 786, 1299 |
| PstI | CTGCAG | 1 cut(s) | 2040 |
| PstNI | CAGNNNCTG | 1 cut(s) | 541 |
| PsuI | RGATCY | 2 cut(s) | 537, 997 |
| PvuII | CAGCTG | 1 cut(s) | 467 |
| RruI | TCGCGA | 1 cut(s) | 1101 |
| RsaI | GTAC | 1 cut(s) | 818 |
| RsaNI | GTAC | 1 cut(s) | 817 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1266, 1374 |
| SacI | GAGCTC | 1 cut(s) | 200 |
| SacII | CCGCGG | 2 cut(s) | 1338, 1957 |
| SalI | GTCGAC | 2 cut(s) | 344, 965 |
| SaqAI | TTAA | 3 cut(s) | 858, 977, 1019 |
| Sau3AI | GATC | 5 cut(s) | 537, 747, 997, 1318, 2025 |
| SchI | GAGTC | 5 cut(s) | 730, 758, 1105, 1511, 1628 |
| SduI | GDGCHC | 3 cut(s) | 200, 528, 1549 |
| SfaNI | GCATC | 5 cut(s) | 588, 1230, 1236, 1350, 1600 |
| SfcI | CTRYAG | 2 cut(s) | 801, 2036 |
| Sfr303I | CCGCGG | 2 cut(s) | 1338, 1957 |
| SfuI | TTCGAA | 1 cut(s) | 1580 |
| SgrBI | CCGCGG | 2 cut(s) | 1338, 1957 |
| SgrDI | CGTCGACG | 1 cut(s) | 344 |
| SinI | GGWCC | 6 cut(s) | 125, 786, 1123, 1299, 1379, 1452 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1266, 1374 |
| SmlI | CTYRAG | 2 cut(s) | 199, 718 |
| SmoI | CTYRAG | 2 cut(s) | 199, 718 |
| Sse9I | AATT | 6 cut(s) | 551, 754, 1031, 1141, 1746, 2079 |
| SseBI | AGGCCT | 1 cut(s) | 452 |
| SspI | AATATT | 1 cut(s) | 1023 |
| SspMI | CTAG | 4 cut(s) | 131, 231, 267, 1631 |
| SstI | GAGCTC | 1 cut(s) | 200 |
| StuI | AGGCCT | 1 cut(s) | 452 |
| StyI | CCWWGG | 2 cut(s) | 1119, 2085 |
| TaaI | ACNGT | 6 cut(s) | 379, 649, 809, 1189, 1288, 1656 |
| TaiI | ACGT | 8 cut(s) | 12, 51, 168, 401, 515, 566, 1515, 1953 |
| TasI | AATT | 6 cut(s) | 551, 754, 1031, 1141, 1746, 2079 |
| TfiI | GAWTC | 4 cut(s) | 35, 83, 311, 457 |
| Tru1I | TTAA | 3 cut(s) | 858, 977, 1019 |
| Tru9I | TTAA | 3 cut(s) | 858, 977, 1019 |
| TscAI | CASTG | 3 cut(s) | 34, 1293, 1443 |
| TseFI | GTSAC | 4 cut(s) | 1417, 1444, 1937, 1982 |
| TseI | GCWGC | 8 cut(s) | 218, 221, 263, 424, 476, 699, 1574, 2035 |
| Tsp45I | GTSAC | 4 cut(s) | 1417, 1444, 1937, 1982 |
| TspDTI | ATGAA | 4 cut(s) | 75, 623, 849, 2013 |
| TspGWI | ACGGA | 2 cut(s) | 84, 488 |
| TspRI | CASTG | 3 cut(s) | 34, 1293, 1443 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 159, 541, 588 |
| VpaK11BI | GGWCC | 6 cut(s) | 125, 786, 1123, 1299, 1379, 1452 |
| XapI | RAATTY | 2 cut(s) | 551, 754 |
| XbaI | TCTAGA | 1 cut(s) | 130 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1262 |
| XmiI | GTMKAC | 2 cut(s) | 345, 966 |
| XmnI | GAANNNNTTC | 1 cut(s) | 660 |
| XspI | CTAG | 4 cut(s) | 131, 231, 267, 1631 |
| ZraI | GACGTC | 1 cut(s) | 1951 |