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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 233, 399 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 46 |
| AccBSI | CCGCTC | 3 cut(s) | 292, 397, 463 |
| AccII | CGCG | 1 cut(s) | 438 |
| AciI | CCGC | 9 cut(s) | 139, 265, 292, 386, 397, 408, 436, 438, 463 |
| AclWI | GGATC | 3 cut(s) | 251, 264, 519 |
| AcsI | RAATTY | 1 cut(s) | 245 |
| AcuI | CTGAAG | 1 cut(s) | 527 |
| AcyI | GRCGYC | 2 cut(s) | 400, 423 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 46, 462 |
| AgsI | TTSAA | 1 cut(s) | 551 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 475 |
| AjnI | CCWGG | 1 cut(s) | 426 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 254, 286 |
| AluBI | AGCT | 5 cut(s) | 328, 382, 445, 484, 500 |
| AluI | AGCT | 5 cut(s) | 328, 382, 445, 484, 500 |
| Alw26I | GTCTC | 1 cut(s) | 353 |
| AlwI | GGATC | 3 cut(s) | 251, 264, 519 |
| AoxI | GGCC | 1 cut(s) | 217 |
| ApeKI | GCWGC | 5 cut(s) | 104, 107, 115, 199, 325 |
| ApoI | RAATTY | 1 cut(s) | 245 |
| AspLEI | GCGC | 1 cut(s) | 402 |
| AsuHPI | GGTGA | 3 cut(s) | 74, 182, 272 |
| BamHI | GGATCC | 1 cut(s) | 256 |
| BanI | GGYRCC | 2 cut(s) | 233, 399 |
| BbvCI | CCTCAGC | 1 cut(s) | 329 |
| BbvI | GCAGC | 5 cut(s) | 91, 94, 127, 211, 337 |
| BccI | CCATC | 3 cut(s) | 21, 123, 464 |
| BceAI | ACGGC | 1 cut(s) | 537 |
| BciT130I | CCWGG | 1 cut(s) | 428 |
| BcoDI | GTCTC | 1 cut(s) | 353 |
| BfaI | CTAG | 1 cut(s) | 221 |
| BfmI | CTRYAG | 1 cut(s) | 411 |
| BfoI | RGCGCY | 1 cut(s) | 403 |
| BisI | GCNGC | 8 cut(s) | 105, 108, 116, 140, 200, 326, 398, 439 |
| BlsI | GCNGC | 8 cut(s) | 106, 109, 117, 141, 201, 327, 399, 440 |
| Bme1390I | CCNGG | 1 cut(s) | 428 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 475 |
| BmiI | GGNNCC | 3 cut(s) | 235, 258, 401 |
| BmrFI | CCNGG | 1 cut(s) | 428 |
| BmsI | GCATC | 1 cut(s) | 421 |
| BpmI | CTGGAG | 1 cut(s) | 506 |
| Bpu10I | CCTNAGC | 1 cut(s) | 329 |
| BsaHI | GRCGYC | 2 cut(s) | 400, 423 |
| BsaI | GGTCTC | 1 cut(s) | 353 |
| BsaJI | CCNNGG | 2 cut(s) | 426, 436 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 46, 462 |
| BseBI | CCWGG | 1 cut(s) | 428 |
| BseDI | CCNNGG | 2 cut(s) | 426, 436 |
| BseGI | GGATG | 1 cut(s) | 436 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 46, 462 |
| BseMII | CTCAG | 1 cut(s) | 320 |
| BseRI | GAGGAG | 1 cut(s) | 350 |
| BseXI | GCAGC | 5 cut(s) | 91, 94, 127, 211, 337 |
| BsgI | GTGCAG | 1 cut(s) | 134 |
| Bsh1236I | CGCG | 1 cut(s) | 438 |
| BshFI | GGCC | 1 cut(s) | 219 |
| BshNI | GGYRCC | 2 cut(s) | 233, 399 |
| BslFI | GGGAC | 1 cut(s) | 434 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 46, 462 |
| BsmAI | GTCTC | 1 cut(s) | 353 |
| BsmFI | GGGAC | 1 cut(s) | 434 |
| BsnI | GGCC | 1 cut(s) | 219 |
| Bso31I | GGTCTC | 1 cut(s) | 353 |
| Bsp143I | GATC | 2 cut(s) | 256, 511 |
| BspACI | CCGC | 9 cut(s) | 139, 265, 292, 386, 397, 408, 436, 438, 463 |
| BspANI | GGCC | 1 cut(s) | 219 |
| BspCNI | CTCAG | 1 cut(s) | 321 |
| BspFNI | CGCG | 1 cut(s) | 438 |
| BspLI | GGNNCC | 3 cut(s) | 235, 258, 401 |
| BspPI | GGATC | 3 cut(s) | 251, 264, 519 |
| BspT107I | GGYRCC | 2 cut(s) | 233, 399 |
| BspTNI | GGTCTC | 1 cut(s) | 353 |
| BsrBI | CCGCTC | 3 cut(s) | 292, 397, 463 |
| BssECI | CCNNGG | 2 cut(s) | 426, 436 |
| BssMI | GATC | 2 cut(s) | 256, 511 |
| BssNI | GRCGYC | 2 cut(s) | 400, 423 |
| Bst2UI | CCWGG | 1 cut(s) | 428 |
| Bst6I | CTCTTC | 1 cut(s) | 159 |
| BstACI | GRCGYC | 2 cut(s) | 400, 423 |
| BstC8I | GCNNGC | 4 cut(s) | 290, 384, 436, 443 |
| BstDEI | CTNAG | 2 cut(s) | 329, 372 |
| BstDSI | CCRYGG | 1 cut(s) | 436 |
| BstF5I | GGATG | 1 cut(s) | 436 |
| BstFNI | CGCG | 1 cut(s) | 438 |
| BstH2I | RGCGCY | 1 cut(s) | 403 |
| BstHHI | GCGC | 1 cut(s) | 402 |
| BstKTI | GATC | 2 cut(s) | 259, 514 |
| BstMAI | GTCTC | 1 cut(s) | 353 |
| BstMBI | GATC | 2 cut(s) | 256, 511 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 431 |
| BstNI | CCWGG | 1 cut(s) | 428 |
| BstNSI | RCATGY | 1 cut(s) | 87 |
| BstSCI | CCNGG | 1 cut(s) | 426 |
| BstSFI | CTRYAG | 1 cut(s) | 411 |
| BstUI | CGCG | 1 cut(s) | 438 |
| BstV1I | GCAGC | 5 cut(s) | 91, 94, 127, 211, 337 |
| BstX2I | RGATCY | 1 cut(s) | 256 |
| BstYI | RGATCY | 1 cut(s) | 256 |
| BsuRI | GGCC | 1 cut(s) | 219 |
| BtgI | CCRYGG | 1 cut(s) | 436 |
| BtsCI | GGATG | 1 cut(s) | 436 |
| Cac8I | GCNNGC | 4 cut(s) | 290, 384, 436, 443 |
| CfoI | GCGC | 1 cut(s) | 402 |
| Cfr42I | CCGCGG | 1 cut(s) | 439 |
| CseI | GACGC | 3 cut(s) | 158, 185, 431 |
| CviAII | CATG | 3 cut(s) | 46, 84, 473 |
| CviJI | RGCY | 8 cut(s) | 118, 219, 310, 328, 382, 445, 484, 500 |
| CviKI_1 | RGCY | 8 cut(s) | 118, 219, 310, 328, 382, 445, 484, 500 |
| DdeI | CTNAG | 2 cut(s) | 329, 372 |
| DinI | GGCGCC | 1 cut(s) | 401 |
| DpnI | GATC | 2 cut(s) | 258, 513 |
| DpnII | GATC | 2 cut(s) | 256, 511 |
| DriI | GACNNNNNGTC | 1 cut(s) | 475 |
| Eam1104I | CTCTTC | 1 cut(s) | 159 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 475 |
| EarI | CTCTTC | 1 cut(s) | 159 |
| EciI | GGCGGA | 1 cut(s) | 401 |
| Eco31I | GGTCTC | 1 cut(s) | 353 |
| Eco32I | GATATC | 2 cut(s) | 451, 544 |
| Eco57I | CTGAAG | 1 cut(s) | 527 |
| EcoRI | GAATTC | 1 cut(s) | 245 |
| EcoRII | CCWGG | 1 cut(s) | 426 |
| EcoRV | GATATC | 2 cut(s) | 451, 544 |
| EgeI | GGCGCC | 1 cut(s) | 401 |
| EheI | GGCGCC | 1 cut(s) | 401 |
| FaeI | CATG | 3 cut(s) | 49, 87, 476 |
| FaiI | YATR | 6 cut(s) | 24, 26, 47, 85, 474, 497 |
| FaqI | GGGAC | 1 cut(s) | 434 |
| FatI | CATG | 3 cut(s) | 45, 83, 472 |
| FauI | CCCGC | 2 cut(s) | 258, 443 |
| Fnu4HI | GCNGC | 8 cut(s) | 105, 108, 116, 140, 200, 326, 398, 439 |
| FokI | GGATG | 1 cut(s) | 443 |
| Fsp4HI | GCNGC | 8 cut(s) | 105, 108, 116, 140, 200, 326, 398, 439 |
| FspBI | CTAG | 1 cut(s) | 221 |
| GlaI | GCGC | 1 cut(s) | 401 |
| GluI | GCNGC | 8 cut(s) | 105, 108, 116, 140, 200, 326, 398, 439 |
| GsuI | CTGGAG | 1 cut(s) | 506 |
| HaeII | RGCGCY | 1 cut(s) | 403 |
| HaeIII | GGCC | 1 cut(s) | 219 |
| HgaI | GACGC | 3 cut(s) | 158, 185, 431 |
| HhaI | GCGC | 1 cut(s) | 402 |
| Hin1I | GRCGYC | 2 cut(s) | 400, 423 |
| Hin1II | CATG | 3 cut(s) | 49, 87, 476 |
| Hin6I | GCGC | 1 cut(s) | 400 |
| HinP1I | GCGC | 1 cut(s) | 400 |
| HinfI | GANTC | 3 cut(s) | 50, 224, 319 |
| HphI | GGTGA | 3 cut(s) | 74, 182, 272 |
| Hpy188III | TCNNGA | 2 cut(s) | 250, 532 |
| Hpy99I | CGWCG | 2 cut(s) | 179, 245 |
| HpyAV | CCTTC | 3 cut(s) | 62, 115, 502 |
| HpyCH4IV | ACGT | 1 cut(s) | 240 |
| HpyCH4V | TGCA | 2 cut(s) | 83, 115 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 431 |
| HpyF3I | CTNAG | 2 cut(s) | 329, 372 |
| HpySE526I | ACGT | 1 cut(s) | 240 |
| Hsp92I | GRCGYC | 2 cut(s) | 400, 423 |
| Hsp92II | CATG | 3 cut(s) | 49, 87, 476 |
| HspAI | GCGC | 1 cut(s) | 400 |
| KasI | GGCGCC | 1 cut(s) | 399 |
| KspI | CCGCGG | 1 cut(s) | 439 |
| Kzo9I | GATC | 2 cut(s) | 256, 511 |
| LmnI | GCTCC | 1 cut(s) | 487 |
| LpnPI | CCDG | 9 cut(s) | 181, 193, 263, 296, 368, 413, 431, 440, 470 |
| Lsp1109I | GCAGC | 5 cut(s) | 91, 94, 127, 211, 337 |
| LweI | GCATC | 1 cut(s) | 421 |
| MaeI | CTAG | 1 cut(s) | 221 |
| MaeII | ACGT | 1 cut(s) | 240 |
| MaeIII | GTNAC | 2 cut(s) | 62, 170 |
| MalI | GATC | 2 cut(s) | 258, 513 |
| MbiI | CCGCTC | 3 cut(s) | 292, 397, 463 |
| MboI | GATC | 2 cut(s) | 256, 511 |
| MboII | GAAGA | 3 cut(s) | 170, 173, 176 |
| MflI | RGATCY | 1 cut(s) | 256 |
| MluCI | AATT | 2 cut(s) | 245, 537 |
| Mly113I | GGCGCC | 1 cut(s) | 400 |
| MlyI | GAGTC | 2 cut(s) | 59, 313 |
| MmeI | TCCRAC | 1 cut(s) | 342 |
| MnlI | CCTC | 7 cut(s) | 52, 160, 175, 293, 299, 324, 328 |
| MseI | TTAA | 1 cut(s) | 342 |
| MspA1I | CMGCKG | 3 cut(s) | 328, 410, 438 |
| MspR9I | CCNGG | 1 cut(s) | 428 |
| MvaI | CCWGG | 1 cut(s) | 428 |
| MvnI | CGCG | 1 cut(s) | 438 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 431 |
| NarI | GGCGCC | 1 cut(s) | 400 |
| NdeII | GATC | 2 cut(s) | 256, 511 |
| NlaIII | CATG | 3 cut(s) | 49, 87, 476 |
| NlaIV | GGNNCC | 3 cut(s) | 235, 258, 401 |
| NmeAIII | GCCGAG | 1 cut(s) | 301 |
| NmuCI | GTSAC | 2 cut(s) | 62, 170 |
| NspI | RCATGY | 1 cut(s) | 87 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 63, 465 |
| PfeI | GAWTC | 1 cut(s) | 224 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 46 |
| PkrI | GCNGC | 8 cut(s) | 106, 109, 117, 141, 201, 327, 399, 440 |
| PleI | GAGTC | 2 cut(s) | 58, 313 |
| PluTI | GGCGCC | 1 cut(s) | 403 |
| PpsI | GAGTC | 2 cut(s) | 58, 313 |
| Psp6I | CCWGG | 1 cut(s) | 426 |
| PspGI | CCWGG | 1 cut(s) | 426 |
| PspN4I | GGNNCC | 3 cut(s) | 235, 258, 401 |
| PsuI | RGATCY | 1 cut(s) | 256 |
| PvuII | CAGCTG | 1 cut(s) | 328 |
| SacII | CCGCGG | 1 cut(s) | 439 |
| SaqAI | TTAA | 1 cut(s) | 342 |
| SatI | GCNGC | 8 cut(s) | 105, 108, 116, 140, 200, 326, 398, 439 |
| Sau3AI | GATC | 2 cut(s) | 256, 511 |
| SchI | GAGTC | 2 cut(s) | 59, 313 |
| ScrFI | CCNGG | 1 cut(s) | 428 |
| SfaNI | GCATC | 1 cut(s) | 421 |
| SfcI | CTRYAG | 1 cut(s) | 411 |
| SfoI | GGCGCC | 1 cut(s) | 401 |
| Sfr303I | CCGCGG | 1 cut(s) | 439 |
| SgrBI | CCGCGG | 1 cut(s) | 439 |
| Sse9I | AATT | 2 cut(s) | 245, 537 |
| SsiI | CCGC | 9 cut(s) | 139, 265, 292, 386, 397, 408, 436, 438, 463 |
| SspDI | GGCGCC | 1 cut(s) | 399 |
| SspMI | CTAG | 1 cut(s) | 221 |
| StyD4I | CCNGG | 1 cut(s) | 426 |
| TaiI | ACGT | 1 cut(s) | 243 |
| TaqI | TCGA | 3 cut(s) | 57, 243, 459 |
| TasI | AATT | 2 cut(s) | 245, 537 |
| TauI | GCSGC | 3 cut(s) | 142, 400, 441 |
| TfiI | GAWTC | 1 cut(s) | 224 |
| Tru1I | TTAA | 1 cut(s) | 342 |
| Tru9I | TTAA | 1 cut(s) | 342 |
| TseFI | GTSAC | 2 cut(s) | 62, 170 |
| TseI | GCWGC | 5 cut(s) | 104, 107, 115, 199, 325 |
| Tsp45I | GTSAC | 2 cut(s) | 62, 170 |
| TspGWI | ACGGA | 1 cut(s) | 269 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 46 |
| XapI | RAATTY | 1 cut(s) | 245 |
| XceI | RCATGY | 1 cut(s) | 87 |
| XspI | CTAG | 1 cut(s) | 221 |