Putative gypsy type transposon
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1571 |
| AatII | GACGTC | 1 cut(s) | 12 |
| Acc36I | ACCTGC | 1 cut(s) | 700 |
| AccB1I | GGYRCC | 4 cut(s) | 335, 2168, 2204, 2297 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 159, 588, 2214 |
| AccBSI | CCGCTC | 5 cut(s) | 244, 884, 1606, 1912, 2304 |
| AccI | GTMKAC | 2 cut(s) | 294, 1670 |
| AccII | CGCG | 9 cut(s) | 62, 187, 909, 924, 1083, 1311, 1411, 1577, 2091 |
| AccIII | TCCGGA | 1 cut(s) | 38 |
| AclWI | GGATC | 4 cut(s) | 49, 451, 1999, 2455 |
| AcoI | YGGCCR | 6 cut(s) | 3, 1222, 1299, 1980, 2034, 2097 |
| AcsI | RAATTY | 2 cut(s) | 73, 537 |
| AcuI | CTGAAG | 7 cut(s) | 66, 300, 410, 1403, 1678, 1994, 2508 |
| AcyI | GRCGYC | 7 cut(s) | 9, 1429, 1547, 1748, 1849, 2205, 2225 |
| AfaI | GTAC | 5 cut(s) | 818, 896, 1115, 1580, 2416 |
| AflIII | ACRYGT | 1 cut(s) | 585 |
| AgsI | TTSAA | 4 cut(s) | 24, 239, 536, 1028 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2430 |
| AjiI | CACGTC | 1 cut(s) | 1534 |
| AjnI | CCWGG | 6 cut(s) | 327, 414, 729, 1101, 1821, 1917 |
| AleI | CACNNNNGTG | 1 cut(s) | 1412 |
| AluBI | AGCT | 5 cut(s) | 424, 433, 745, 1777, 2249 |
| AluI | AGCT | 5 cut(s) | 424, 433, 745, 1777, 2249 |
| Alw21I | GWGCWC | 4 cut(s) | 327, 486, 1320, 1779 |
| Alw26I | GTCTC | 4 cut(s) | 980, 1100, 2379, 2417 |
| Alw44I | GTGCAC | 2 cut(s) | 482, 1316 |
| AlwI | GGATC | 4 cut(s) | 49, 451, 1999, 2455 |
| Ama87I | CYCGRG | 5 cut(s) | 1384, 1517, 1761, 2305, 2403 |
| Aor13HI | TCCGGA | 1 cut(s) | 38 |
| ApaI | GGGCCC | 1 cut(s) | 1486 |
| ApaLI | GTGCAC | 2 cut(s) | 482, 1316 |
| ApoI | RAATTY | 2 cut(s) | 73, 537 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1417, 1449, 1532, 1564 |
| AsuC2I | CCSGG | 7 cut(s) | 411, 1123, 1306, 1762, 1763, 2404, 2405 |
| AsuHPI | GGTGA | 6 cut(s) | 430, 451, 1159, 1342, 1613, 2069 |
| AvaI | CYCGRG | 5 cut(s) | 1384, 1517, 1761, 2305, 2403 |
| AvaII | GGWCC | 5 cut(s) | 641, 786, 828, 1078, 1915 |
| AxyI | CCTNAGG | 1 cut(s) | 2072 |
| BaeGI | GKGCMC | 6 cut(s) | 486, 1320, 1486, 1713, 2173, 2302 |
| BanI | GGYRCC | 4 cut(s) | 335, 2168, 2204, 2297 |
| BanII | GRGCYC | 4 cut(s) | 1371, 1385, 1486, 1779 |
| BauI | CACGAG | 4 cut(s) | 485, 1017, 1730, 2376 |
| BbsI | GAAGAC | 2 cut(s) | 1145, 1432 |
| Bbv12I | GWGCWC | 4 cut(s) | 327, 486, 1320, 1779 |
| BccI | CCATC | 6 cut(s) | 326, 799, 1224, 1972, 2288, 2405 |
| BceAI | ACGGC | 8 cut(s) | 362, 464, 1038, 1209, 1416, 1661, 1716, 2063 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 1508, 1542, 1853, 1879, 1887, 1913 |
| BciT130I | CCWGG | 6 cut(s) | 329, 416, 731, 1103, 1823, 1919 |
| BcnI | CCSGG | 7 cut(s) | 411, 1123, 1306, 1762, 1763, 2404, 2405 |
| BcoDI | GTCTC | 4 cut(s) | 980, 1100, 2379, 2417 |
| BfaI | CTAG | 5 cut(s) | 131, 521, 1562, 2028, 2174 |
| BfoI | RGCGCY | 7 cut(s) | 608, 694, 740, 1169, 2147, 2208, 2328 |
| BfuAI | ACCTGC | 1 cut(s) | 700 |
| BglII | AGATCT | 1 cut(s) | 573 |
| BlpI | GCTNAGC | 1 cut(s) | 1169 |
| Bme18I | GGWCC | 5 cut(s) | 641, 786, 828, 1078, 1915 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2430 |
| BmeT110I | CYCGRG | 5 cut(s) | 1384, 1517, 1761, 2305, 2403 |
| BmgBI | CACGTC | 1 cut(s) | 1534 |
| BmrI | ACTGGG | 3 cut(s) | 1488, 2224, 2356 |
| BmsI | GCATC | 7 cut(s) | 295, 588, 1642, 1861, 1870, 2245, 2488 |
| BmuI | ACTGGG | 3 cut(s) | 1488, 2224, 2356 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1019 |
| BpiI | GAAGAC | 2 cut(s) | 1145, 1432 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 437, 469 |
| BpmI | CTGGAG | 3 cut(s) | 311, 1124, 2072 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1778, 2250 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1169 |
| BpuEI | CTTGAG | 1 cut(s) | 2413 |
| BpuMI | CCSGG | 7 cut(s) | 411, 1123, 1306, 1762, 1763, 2404, 2405 |
| BsaAI | YACGTR | 1 cut(s) | 637 |
| BsaHI | GRCGYC | 7 cut(s) | 9, 1429, 1547, 1748, 1849, 2205, 2225 |
| BsaI | GGTCTC | 2 cut(s) | 1100, 2417 |
| BsaWI | WCCGGW | 2 cut(s) | 38, 402 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 833, 863, 1097, 1127 |
| Bse118I | RCCGGY | 3 cut(s) | 1297, 2165, 2233 |
| Bse1I | ACTGG | 7 cut(s) | 267, 681, 988, 1261, 1483, 2219, 2362 |
| Bse21I | CCTNAGG | 1 cut(s) | 2072 |
| Bse3DI | GCAATG | 1 cut(s) | 86 |
| BseAI | TCCGGA | 1 cut(s) | 38 |
| BseBI | CCWGG | 6 cut(s) | 329, 416, 731, 1103, 1823, 1919 |
| BseMI | GCAATG | 1 cut(s) | 86 |
| BseMII | CTCAG | 7 cut(s) | 710, 1148, 1170, 1792, 2063, 2070, 2300 |
| BseNI | ACTGG | 7 cut(s) | 267, 681, 988, 1261, 1483, 2219, 2362 |
| BseRI | GAGGAG | 5 cut(s) | 224, 851, 854, 1472, 1799 |
| BseSI | GKGCMC | 6 cut(s) | 486, 1320, 1486, 1713, 2173, 2302 |
| BseX3I | CGGCCG | 1 cut(s) | 2097 |
| BseYI | CCCAGC | 5 cut(s) | 781, 987, 1336, 2346, 2381 |
| BsgI | GTGCAG | 1 cut(s) | 126 |
| Bsh1236I | CGCG | 9 cut(s) | 62, 187, 909, 924, 1083, 1311, 1411, 1577, 2091 |
| Bsh1285I | CGRYCG | 3 cut(s) | 1674, 2100, 2238 |
| BshNI | GGYRCC | 4 cut(s) | 335, 2168, 2204, 2297 |
| BsiEI | CGRYCG | 3 cut(s) | 1674, 2100, 2238 |
| BsiHKAI | GWGCWC | 4 cut(s) | 327, 486, 1320, 1779 |
| BsiHKCI | CYCGRG | 5 cut(s) | 1384, 1517, 1761, 2305, 2403 |
| BsiWI | CGTACG | 1 cut(s) | 1578 |
| BslFI | GGGAC | 7 cut(s) | 176, 654, 799, 1622, 1820, 1928, 1945 |
| BsmAI | GTCTC | 4 cut(s) | 980, 1100, 2379, 2417 |
| BsmFI | GGGAC | 7 cut(s) | 176, 654, 799, 1622, 1820, 1928, 1945 |
| Bso31I | GGTCTC | 2 cut(s) | 1100, 2417 |
| BsoBI | CYCGRG | 5 cut(s) | 1384, 1517, 1761, 2305, 2403 |
| Bsp120I | GGGCCC | 1 cut(s) | 1482 |
| Bsp13I | TCCGGA | 1 cut(s) | 38 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1169 |
| Bsp19I | CCATGG | 2 cut(s) | 1074, 1188 |
| Bsp68I | TCGCGA | 1 cut(s) | 909 |
| BspCNI | CTCAG | 7 cut(s) | 711, 1147, 1171, 1791, 2064, 2071, 2299 |
| BspEI | TCCGGA | 1 cut(s) | 38 |
| BspFNI | CGCG | 9 cut(s) | 62, 187, 909, 924, 1083, 1311, 1411, 1577, 2091 |
| BspMI | ACCTGC | 1 cut(s) | 700 |
| BspPI | GGATC | 4 cut(s) | 49, 451, 1999, 2455 |
| BspQI | GCTCTTC | 1 cut(s) | 234 |
| BspT107I | GGYRCC | 4 cut(s) | 335, 2168, 2204, 2297 |
| BspTNI | GGTCTC | 2 cut(s) | 1100, 2417 |
| BsrBI | CCGCTC | 5 cut(s) | 244, 884, 1606, 1912, 2304 |
| BsrDI | GCAATG | 1 cut(s) | 86 |
| BsrFI | RCCGGY | 3 cut(s) | 1297, 2165, 2233 |
| BsrI | ACTGG | 7 cut(s) | 267, 681, 988, 1261, 1483, 2219, 2362 |
| BssAI | RCCGGY | 3 cut(s) | 1297, 2165, 2233 |
| BssNI | GRCGYC | 7 cut(s) | 9, 1429, 1547, 1748, 1849, 2205, 2225 |
| BssSI | CACGAG | 4 cut(s) | 485, 1017, 1730, 2376 |
| BssT1I | CCWWGG | 3 cut(s) | 694, 1074, 1188 |
| Bst2BI | CACGAG | 4 cut(s) | 485, 1017, 1730, 2376 |
| Bst2UI | CCWGG | 6 cut(s) | 329, 416, 731, 1103, 1823, 1919 |
| Bst4CI | ACNGT | 8 cut(s) | 159, 370, 439, 649, 1144, 1354, 1601, 1868 |
| Bst6I | CTCTTC | 3 cut(s) | 234, 909, 1449 |
| BstACI | GRCGYC | 7 cut(s) | 9, 1429, 1547, 1748, 1849, 2205, 2225 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1880 |
| BstBAI | YACGTR | 1 cut(s) | 637 |
| BstDSI | CCRYGG | 5 cut(s) | 158, 1074, 1188, 1885, 2443 |
| BstFNI | CGCG | 9 cut(s) | 62, 187, 909, 924, 1083, 1311, 1411, 1577, 2091 |
| BstH2I | RGCGCY | 7 cut(s) | 608, 694, 740, 1169, 2147, 2208, 2328 |
| BstMAI | GTCTC | 4 cut(s) | 980, 1100, 2379, 2417 |
| BstMCI | CGRYCG | 3 cut(s) | 1674, 2100, 2238 |
| BstNI | CCWGG | 6 cut(s) | 329, 416, 731, 1103, 1823, 1919 |
| BstNSI | RCATGY | 1 cut(s) | 589 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1019 |
| BstSLI | GKGCMC | 6 cut(s) | 486, 1320, 1486, 1713, 2173, 2302 |
| BstUI | CGCG | 9 cut(s) | 62, 187, 909, 924, 1083, 1311, 1411, 1577, 2091 |
| BstV2I | GAAGAC | 2 cut(s) | 1145, 1432 |
| BstX2I | RGATCY | 4 cut(s) | 41, 573, 2004, 2447 |
| BstYI | RGATCY | 4 cut(s) | 41, 573, 2004, 2447 |
| BstZI | CGGCCG | 1 cut(s) | 2097 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2072 |
| BtgI | CCRYGG | 5 cut(s) | 158, 1074, 1188, 1885, 2443 |
| BtrI | CACGTC | 1 cut(s) | 1534 |
| BtsI | GCAGTG | 4 cut(s) | 34, 116, 219, 1281 |
| BtsIMutI | CAGTG | 6 cut(s) | 34, 116, 219, 274, 1281, 1476 |
| BtuMI | TCGCGA | 1 cut(s) | 909 |
| BveI | ACCTGC | 1 cut(s) | 700 |
| CciNI | GCGGCCGC | 1 cut(s) | 2097 |
| Cfr10I | RCCGGY | 3 cut(s) | 1297, 2165, 2233 |
| Cfr9I | CCCGGG | 2 cut(s) | 1761, 2403 |
| CseI | GACGC | 8 cut(s) | 176, 416, 1437, 1536, 1737, 1857, 2214, 2492 |
| Csp6I | GTAC | 5 cut(s) | 817, 895, 1114, 1579, 2415 |
| CviAII | CATG | 6 cut(s) | 586, 769, 1075, 1111, 1189, 2230 |
| CviQI | GTAC | 5 cut(s) | 817, 895, 1114, 1579, 2415 |
| DinI | GGCGCC | 1 cut(s) | 2206 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1571 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2430 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1571 |
| EaeI | YGGCCR | 6 cut(s) | 3, 1222, 1299, 1980, 2034, 2097 |
| EagI | CGGCCG | 1 cut(s) | 2097 |
| Eam1104I | CTCTTC | 3 cut(s) | 234, 909, 1449 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2430 |
| EarI | CTCTTC | 3 cut(s) | 234, 909, 1449 |
| EciI | GGCGGA | 4 cut(s) | 80, 964, 2351, 2423 |
| Ecl136II | GAGCTC | 1 cut(s) | 1777 |
| EclXI | CGGCCG | 1 cut(s) | 2097 |
| Eco130I | CCWWGG | 3 cut(s) | 694, 1074, 1188 |
| Eco147I | AGGCCT | 2 cut(s) | 452, 1390 |
| Eco24I | GRGCYC | 4 cut(s) | 1371, 1385, 1486, 1779 |
| Eco31I | GGTCTC | 2 cut(s) | 1100, 2417 |
| Eco47I | GGWCC | 5 cut(s) | 641, 786, 828, 1078, 1915 |
| Eco52I | CGGCCG | 1 cut(s) | 2097 |
| Eco53kI | GAGCTC | 1 cut(s) | 1777 |
| Eco57I | CTGAAG | 7 cut(s) | 66, 300, 410, 1403, 1678, 1994, 2508 |
| Eco81I | CCTNAGG | 1 cut(s) | 2072 |
| Eco88I | CYCGRG | 5 cut(s) | 1384, 1517, 1761, 2305, 2403 |
| EcoICRI | GAGCTC | 1 cut(s) | 1777 |
| EcoO109I | RGGNCCY | 3 cut(s) | 786, 1482, 1915 |
| EcoRII | CCWGG | 6 cut(s) | 327, 414, 729, 1101, 1821, 1917 |
| EcoT14I | CCWWGG | 3 cut(s) | 694, 1074, 1188 |
| EcoT38I | GRGCYC | 4 cut(s) | 1371, 1385, 1486, 1779 |
| EgeI | GGCGCC | 1 cut(s) | 2206 |
| EheI | GGCGCC | 1 cut(s) | 2206 |
| ErhI | CCWWGG | 3 cut(s) | 694, 1074, 1188 |
| FaeI | CATG | 6 cut(s) | 589, 772, 1078, 1114, 1192, 2233 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2311, 2343 |
| FaqI | GGGAC | 7 cut(s) | 176, 654, 799, 1622, 1820, 1928, 1945 |
| FatI | CATG | 6 cut(s) | 585, 768, 1074, 1110, 1188, 2229 |
| FblI | GTMKAC | 2 cut(s) | 294, 1670 |
| FokI | GGATG | 9 cut(s) | 317, 344, 376, 409, 1475, 1990, 2267, 2351, 2423 |
| FriOI | GRGCYC | 4 cut(s) | 1371, 1385, 1486, 1779 |
| FspBI | CTAG | 5 cut(s) | 131, 521, 1562, 2028, 2174 |
| GsaI | CCCAGC | 5 cut(s) | 785, 991, 1340, 2350, 2385 |
| GsuI | CTGGAG | 3 cut(s) | 311, 1124, 2072 |
| HaeII | RGCGCY | 7 cut(s) | 608, 694, 740, 1169, 2147, 2208, 2328 |
| HgaI | GACGC | 8 cut(s) | 176, 416, 1437, 1536, 1737, 1857, 2214, 2492 |
| Hin1I | GRCGYC | 7 cut(s) | 9, 1429, 1547, 1748, 1849, 2205, 2225 |
| Hin1II | CATG | 6 cut(s) | 589, 772, 1078, 1114, 1192, 2233 |
| HincII | GTYRAC | 3 cut(s) | 382, 1671, 1681 |
| HindII | GTYRAC | 3 cut(s) | 382, 1671, 1681 |
| HphI | GGTGA | 6 cut(s) | 430, 451, 1159, 1342, 1613, 2069 |
| Hpy166II | GTNNAC | 9 cut(s) | 295, 382, 484, 715, 1150, 1318, 1551, 1671, 1681 |
| Hpy188III | TCNNGA | 4 cut(s) | 39, 908, 1038, 1562 |
| Hpy8I | GTNNAC | 9 cut(s) | 295, 382, 484, 715, 1150, 1318, 1551, 1671, 1681 |
| Hpy99I | CGWCG | 8 cut(s) | 11, 850, 1039, 1378, 1753, 1851, 1904, 2266 |
| HpyCH4III | ACNGT | 8 cut(s) | 159, 370, 439, 649, 1144, 1354, 1601, 1868 |
| HpyCH4IV | ACGT | 5 cut(s) | 9, 165, 636, 848, 1533 |
| HpyCH4V | TGCA | 9 cut(s) | 107, 484, 501, 664, 1318, 1729, 1801, 1874, 1969 |
| HpySE526I | ACGT | 5 cut(s) | 9, 165, 636, 848, 1533 |
| Hsp92I | GRCGYC | 7 cut(s) | 9, 1429, 1547, 1748, 1849, 2205, 2225 |
| Hsp92II | CATG | 6 cut(s) | 589, 772, 1078, 1114, 1192, 2233 |
| KasI | GGCGCC | 1 cut(s) | 2204 |
| Kpn2I | TCCGGA | 1 cut(s) | 38 |
| KroI | GCCGGC | 1 cut(s) | 1297 |
| KroNI | GCCGGC | 1 cut(s) | 1299 |
| LguI | GCTCTTC | 1 cut(s) | 234 |
| LweI | GCATC | 7 cut(s) | 295, 588, 1642, 1861, 1870, 2245, 2488 |
| MaeI | CTAG | 5 cut(s) | 131, 521, 1562, 2028, 2174 |
| MaeII | ACGT | 5 cut(s) | 9, 165, 636, 848, 1533 |
| MaeIII | GTNAC | 4 cut(s) | 508, 632, 1226, 2062 |
| MbiI | CCGCTC | 5 cut(s) | 244, 884, 1606, 1912, 2304 |
| MboII | GAAGA | 7 cut(s) | 251, 923, 926, 1150, 1437, 1466, 1507 |
| MflI | RGATCY | 4 cut(s) | 41, 573, 2004, 2447 |
| MluCI | AATT | 3 cut(s) | 73, 537, 1934 |
| Mly113I | GGCGCC | 1 cut(s) | 2205 |
| MmeI | TCCRAC | 6 cut(s) | 843, 855, 1344, 1926, 2346, 2491 |
| MroI | TCCGGA | 1 cut(s) | 38 |
| MroNI | GCCGGC | 1 cut(s) | 1297 |
| MseI | TTAA | 2 cut(s) | 858, 2043 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1412 |
| MspA1I | CMGCKG | 7 cut(s) | 433, 467, 1340, 1400, 2014, 2105, 2350 |
| MvaI | CCWGG | 6 cut(s) | 329, 416, 731, 1103, 1823, 1919 |
| MvnI | CGCG | 9 cut(s) | 62, 187, 909, 924, 1083, 1311, 1411, 1577, 2091 |
| NaeI | GCCGGC | 1 cut(s) | 1299 |
| NarI | GGCGCC | 1 cut(s) | 2205 |
| NciI | CCSGG | 7 cut(s) | 411, 1123, 1306, 1762, 1763, 2404, 2405 |
| NcoI | CCATGG | 2 cut(s) | 1074, 1188 |
| NgoMIV | GCCGGC | 1 cut(s) | 1297 |
| NlaIII | CATG | 6 cut(s) | 589, 772, 1078, 1114, 1192, 2233 |
| NmeAIII | GCCGAG | 3 cut(s) | 334, 1609, 2062 |
| NmuCI | GTSAC | 3 cut(s) | 508, 1226, 2062 |
| NotI | GCGGCCGC | 1 cut(s) | 2097 |
| NruI | TCGCGA | 1 cut(s) | 909 |
| NspI | RCATGY | 1 cut(s) | 589 |
| OliI | CACNNNNGTG | 1 cut(s) | 1412 |
| PaeR7I | CTCGAG | 1 cut(s) | 1384 |
| PceI | AGGCCT | 2 cut(s) | 452, 1390 |
| PciI | ACATGT | 1 cut(s) | 585 |
| PciSI | GCTCTTC | 1 cut(s) | 234 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 184, 1382, 1581 |
| PdiI | GCCGGC | 1 cut(s) | 1299 |
| PfeI | GAWTC | 3 cut(s) | 35, 952, 1442 |
| Pfl23II | CGTACG | 1 cut(s) | 1578 |
| PflFI | GACNNNGTC | 1 cut(s) | 1431 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 159, 588, 2214 |
| PfoI | TCCNGGA | 2 cut(s) | 327, 1101 |
| PluTI | GGCGCC | 1 cut(s) | 2208 |
| Ppu21I | YACGTR | 1 cut(s) | 637 |
| PpuMI | RGGWCCY | 2 cut(s) | 786, 1915 |
| PscI | ACATGT | 1 cut(s) | 585 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1019 |
| Psp124BI | GAGCTC | 1 cut(s) | 1779 |
| Psp5II | RGGWCCY | 2 cut(s) | 786, 1915 |
| Psp6I | CCWGG | 6 cut(s) | 327, 414, 729, 1101, 1821, 1917 |
| PspFI | CCCAGC | 5 cut(s) | 781, 987, 1336, 2346, 2381 |
| PspGI | CCWGG | 6 cut(s) | 327, 414, 729, 1101, 1821, 1917 |
| PspLI | CGTACG | 1 cut(s) | 1578 |
| PspOMI | GGGCCC | 1 cut(s) | 1482 |
| PspPPI | RGGWCCY | 2 cut(s) | 786, 1915 |
| PspXI | VCTCGAGB | 1 cut(s) | 1384 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1571, 1603 |
| PsuI | RGATCY | 4 cut(s) | 41, 573, 2004, 2447 |
| PsyI | GACNNNGTC | 1 cut(s) | 1431 |
| PvuII | CAGCTG | 1 cut(s) | 433 |
| RruI | TCGCGA | 1 cut(s) | 909 |
| RsaI | GTAC | 5 cut(s) | 818, 896, 1115, 1580, 2416 |
| RsaNI | GTAC | 5 cut(s) | 817, 895, 1114, 1579, 2415 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1412 |
| SacI | GAGCTC | 1 cut(s) | 1779 |
| SalI | GTCGAC | 1 cut(s) | 1669 |
| SapI | GCTCTTC | 1 cut(s) | 234 |
| SaqAI | TTAA | 2 cut(s) | 858, 2043 |
| SfaNI | GCATC | 7 cut(s) | 295, 588, 1642, 1861, 1870, 2245, 2488 |
| SfoI | GGCGCC | 1 cut(s) | 2206 |
| Sfr274I | CTCGAG | 1 cut(s) | 1384 |
| SinI | GGWCC | 5 cut(s) | 641, 786, 828, 1078, 1915 |
| SlaI | CTCGAG | 1 cut(s) | 1384 |
| SmaI | CCCGGG | 2 cut(s) | 1763, 2405 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1412 |
| SmlI | CTYRAG | 2 cut(s) | 1384, 2428 |
| SmoI | CTYRAG | 2 cut(s) | 1384, 2428 |
| Sse9I | AATT | 3 cut(s) | 73, 537, 1934 |
| SseBI | AGGCCT | 2 cut(s) | 452, 1390 |
| SspDI | GGCGCC | 1 cut(s) | 2204 |
| SspMI | CTAG | 5 cut(s) | 131, 521, 1562, 2028, 2174 |
| SstI | GAGCTC | 1 cut(s) | 1779 |
| StuI | AGGCCT | 2 cut(s) | 452, 1390 |
| StyI | CCWWGG | 3 cut(s) | 694, 1074, 1188 |
| TaaI | ACNGT | 8 cut(s) | 159, 370, 439, 649, 1144, 1354, 1601, 1868 |
| TaiI | ACGT | 5 cut(s) | 12, 168, 639, 851, 1536 |
| TaqI | TCGA | 6 cut(s) | 455, 1002, 1092, 1385, 1670, 1751 |
| TaqII | GACCGA | 3 cut(s) | 658, 1877, 2165 |
| TasI | AATT | 3 cut(s) | 73, 537, 1934 |
| TfiI | GAWTC | 3 cut(s) | 35, 952, 1442 |
| Tru1I | TTAA | 2 cut(s) | 858, 2043 |
| Tru9I | TTAA | 2 cut(s) | 858, 2043 |
| TscAI | CASTG | 6 cut(s) | 34, 123, 226, 274, 1281, 1483 |
| TseFI | GTSAC | 3 cut(s) | 508, 1226, 2062 |
| Tsp45I | GTSAC | 3 cut(s) | 508, 1226, 2062 |
| TspDTI | ATGAA | 2 cut(s) | 757, 1455 |
| TspGWI | ACGGA | 4 cut(s) | 1023, 1939, 2250, 2460 |
| TspMI | CCCGGG | 2 cut(s) | 1761, 2403 |
| TspRI | CASTG | 6 cut(s) | 34, 123, 226, 274, 1281, 1483 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1431 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 159, 588, 2214 |
| VneI | GTGCAC | 2 cut(s) | 482, 1316 |
| VpaK11BI | GGWCC | 5 cut(s) | 641, 786, 828, 1078, 1915 |
| XapI | RAATTY | 2 cut(s) | 73, 537 |
| XbaI | TCTAGA | 1 cut(s) | 1561 |
| XceI | RCATGY | 1 cut(s) | 589 |
| XhoI | CTCGAG | 1 cut(s) | 1384 |
| XmaI | CCCGGG | 2 cut(s) | 1761, 2403 |
| XmiI | GTMKAC | 2 cut(s) | 294, 1670 |
| XspI | CTAG | 5 cut(s) | 131, 521, 1562, 2028, 2174 |
| ZraI | GACGTC | 1 cut(s) | 10 |