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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 293 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 36 |
| AccBSI | CCGCTC | 1 cut(s) | 49 |
| AccII | CGCG | 3 cut(s) | 12, 332, 368 |
| AciI | CCGC | 9 cut(s) | 10, 12, 49, 139, 161, 228, 281, 380, 554 |
| AclWI | GGATC | 3 cut(s) | 105, 124, 534 |
| AcoI | YGGCCR | 1 cut(s) | 588 |
| AcuI | CTGAAG | 2 cut(s) | 113, 119 |
| AcyI | GRCGYC | 1 cut(s) | 294 |
| AfaI | GTAC | 1 cut(s) | 260 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 36, 139, 457, 563 |
| AgsI | TTSAA | 1 cut(s) | 244 |
| AjnI | CCWGG | 1 cut(s) | 540 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 86, 118 |
| AluBI | AGCT | 5 cut(s) | 19, 70, 196, 203, 213 |
| AluI | AGCT | 5 cut(s) | 19, 70, 196, 203, 213 |
| AlwI | GGATC | 3 cut(s) | 105, 124, 534 |
| Ama87I | CYCGRG | 3 cut(s) | 430, 477, 502 |
| AoxI | GGCC | 2 cut(s) | 538, 588 |
| ApeKI | GCWGC | 3 cut(s) | 213, 578, 581 |
| AspLEI | GCGC | 3 cut(s) | 296, 332, 368 |
| AspS9I | GGNCC | 1 cut(s) | 40 |
| AsuC2I | CCSGG | 1 cut(s) | 519 |
| AsuHPI | GGTGA | 5 cut(s) | 19, 178, 452, 508, 578 |
| AvaI | CYCGRG | 3 cut(s) | 430, 477, 502 |
| AvaII | GGWCC | 1 cut(s) | 40 |
| BalI | TGGCCA | 1 cut(s) | 590 |
| BanI | GGYRCC | 1 cut(s) | 293 |
| BbvI | GCAGC | 3 cut(s) | 200, 565, 568 |
| BccI | CCATC | 2 cut(s) | 268, 479 |
| BceAI | ACGGC | 1 cut(s) | 569 |
| BciT130I | CCWGG | 1 cut(s) | 542 |
| BciVI | GTATCC | 2 cut(s) | 73, 558 |
| BcnI | CCSGG | 1 cut(s) | 519 |
| BfoI | RGCGCY | 1 cut(s) | 297 |
| BfuI | GTATCC | 2 cut(s) | 73, 558 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 236 |
| BisI | GCNGC | 7 cut(s) | 13, 214, 228, 282, 380, 579, 582 |
| BlsI | GCNGC | 7 cut(s) | 14, 215, 229, 283, 381, 580, 583 |
| Bme1390I | CCNGG | 2 cut(s) | 519, 542 |
| Bme18I | GGWCC | 1 cut(s) | 40 |
| BmeT110I | CYCGRG | 3 cut(s) | 430, 477, 502 |
| BmgT120I | GGNCC | 1 cut(s) | 40 |
| BmiI | GGNNCC | 2 cut(s) | 41, 295 |
| BmrFI | CCNGG | 2 cut(s) | 519, 542 |
| BmrI | ACTGGG | 3 cut(s) | 349, 349, 401 |
| BmuI | ACTGGG | 3 cut(s) | 349, 349, 401 |
| BpmI | CTGGAG | 3 cut(s) | 92, 197, 438 |
| BpuEI | CTTGAG | 1 cut(s) | 65 |
| BpuMI | CCSGG | 1 cut(s) | 519 |
| BsaAI | YACGTR | 1 cut(s) | 61 |
| BsaHI | GRCGYC | 1 cut(s) | 294 |
| BsaJI | CCNNGG | 5 cut(s) | 10, 111, 231, 451, 585 |
| BsaWI | WCCGGW | 1 cut(s) | 559 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 36, 139, 457, 563 |
| Bse1I | ACTGG | 4 cut(s) | 344, 355, 396, 421 |
| Bse3DI | GCAATG | 1 cut(s) | 405 |
| BseBI | CCWGG | 1 cut(s) | 542 |
| BseDI | CCNNGG | 5 cut(s) | 10, 111, 231, 451, 585 |
| BseGI | GGATG | 2 cut(s) | 10, 490 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 36, 139, 457, 563 |
| BseMI | GCAATG | 1 cut(s) | 405 |
| BseMII | CTCAG | 2 cut(s) | 195, 243 |
| BseNI | ACTGG | 4 cut(s) | 344, 355, 396, 421 |
| BseRI | GAGGAG | 2 cut(s) | 223, 269 |
| BseXI | GCAGC | 3 cut(s) | 200, 565, 568 |
| BseYI | CCCAGC | 2 cut(s) | 66, 192 |
| BsgI | GTGCAG | 1 cut(s) | 199 |
| Bsh1236I | CGCG | 3 cut(s) | 12, 332, 368 |
| BshFI | GGCC | 2 cut(s) | 540, 590 |
| BshNI | GGYRCC | 1 cut(s) | 293 |
| BsiHKCI | CYCGRG | 3 cut(s) | 430, 477, 502 |
| BsiSI | CCGG | 2 cut(s) | 518, 560 |
| BslFI | GGGAC | 2 cut(s) | 53, 337 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 36, 139, 457, 563 |
| BsmFI | GGGAC | 2 cut(s) | 53, 337 |
| BsnI | GGCC | 2 cut(s) | 540, 590 |
| BsoBI | CYCGRG | 3 cut(s) | 430, 477, 502 |
| Bsp143I | GATC | 3 cut(s) | 97, 129, 526 |
| Bsp19I | CCATGG | 2 cut(s) | 231, 451 |
| BspACI | CCGC | 9 cut(s) | 10, 12, 49, 139, 161, 228, 281, 380, 554 |
| BspANI | GGCC | 2 cut(s) | 540, 590 |
| BspCNI | CTCAG | 2 cut(s) | 196, 244 |
| BspFNI | CGCG | 3 cut(s) | 12, 332, 368 |
| BspLI | GGNNCC | 2 cut(s) | 41, 295 |
| BspPI | GGATC | 3 cut(s) | 105, 124, 534 |
| BspT107I | GGYRCC | 1 cut(s) | 293 |
| BsrBI | CCGCTC | 1 cut(s) | 49 |
| BsrDI | GCAATG | 1 cut(s) | 405 |
| BsrI | ACTGG | 4 cut(s) | 344, 355, 396, 421 |
| BssECI | CCNNGG | 5 cut(s) | 10, 111, 231, 451, 585 |
| BssMI | GATC | 3 cut(s) | 97, 129, 526 |
| BssNI | GRCGYC | 1 cut(s) | 294 |
| BssT1I | CCWWGG | 3 cut(s) | 111, 231, 451 |
| Bst2UI | CCWGG | 1 cut(s) | 542 |
| Bst4CI | ACNGT | 1 cut(s) | 151 |
| BstACI | GRCGYC | 1 cut(s) | 294 |
| BstBAI | YACGTR | 1 cut(s) | 61 |
| BstC8I | GCNNGC | 6 cut(s) | 10, 17, 292, 364, 377, 427 |
| BstDEI | CTNAG | 3 cut(s) | 117, 204, 252 |
| BstDSI | CCRYGG | 4 cut(s) | 10, 231, 451, 585 |
| BstEII | GGTNACC | 1 cut(s) | 496 |
| BstF5I | GGATG | 2 cut(s) | 10, 490 |
| BstFNI | CGCG | 3 cut(s) | 12, 332, 368 |
| BstH2I | RGCGCY | 1 cut(s) | 297 |
| BstHHI | GCGC | 3 cut(s) | 296, 332, 368 |
| BstKTI | GATC | 3 cut(s) | 100, 132, 529 |
| BstMBI | GATC | 3 cut(s) | 97, 129, 526 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 113, 236, 287, 372, 385, 587 |
| BstNI | CCWGG | 1 cut(s) | 542 |
| BstNSI | RCATGY | 1 cut(s) | 429 |
| BstPI | GGTNACC | 1 cut(s) | 496 |
| BstSCI | CCNGG | 2 cut(s) | 517, 540 |
| BstUI | CGCG | 3 cut(s) | 12, 332, 368 |
| BstV1I | GCAGC | 3 cut(s) | 200, 565, 568 |
| BstX2I | RGATCY | 1 cut(s) | 129 |
| BstYI | RGATCY | 1 cut(s) | 129 |
| BsuI | GTATCC | 2 cut(s) | 73, 558 |
| BsuRI | GGCC | 2 cut(s) | 540, 590 |
| BtgI | CCRYGG | 4 cut(s) | 10, 231, 451, 585 |
| BtsCI | GGATG | 2 cut(s) | 10, 490 |
| Cac8I | GCNNGC | 6 cut(s) | 10, 17, 292, 364, 377, 427 |
| CfoI | GCGC | 3 cut(s) | 296, 332, 368 |
| Cfr13I | GGNCC | 1 cut(s) | 40 |
| Cfr42I | CCGCGG | 1 cut(s) | 13 |
| CseI | GACGC | 1 cut(s) | 357 |
| Csp6I | GTAC | 1 cut(s) | 259 |
| CviAII | CATG | 3 cut(s) | 232, 426, 452 |
| CviQI | GTAC | 1 cut(s) | 259 |
| DdeI | CTNAG | 3 cut(s) | 117, 204, 252 |
| DinI | GGCGCC | 1 cut(s) | 295 |
| DpnI | GATC | 3 cut(s) | 99, 131, 528 |
| DpnII | GATC | 3 cut(s) | 97, 129, 526 |
| EaeI | YGGCCR | 1 cut(s) | 588 |
| Eco130I | CCWWGG | 3 cut(s) | 111, 231, 451 |
| Eco47I | GGWCC | 1 cut(s) | 40 |
| Eco57I | CTGAAG | 2 cut(s) | 113, 119 |
| Eco88I | CYCGRG | 3 cut(s) | 430, 477, 502 |
| Eco91I | GGTNACC | 1 cut(s) | 496 |
| EcoO109I | RGGNCCY | 1 cut(s) | 40 |
| EcoO65I | GGTNACC | 1 cut(s) | 496 |
| EcoRII | CCWGG | 1 cut(s) | 540 |
| EcoT14I | CCWWGG | 3 cut(s) | 111, 231, 451 |
| EgeI | GGCGCC | 1 cut(s) | 295 |
| EheI | GGCGCC | 1 cut(s) | 295 |
| ErhI | CCWWGG | 3 cut(s) | 111, 231, 451 |
| FaeI | CATG | 3 cut(s) | 235, 429, 455 |
| FaiI | YATR | 6 cut(s) | 83, 233, 427, 453, 494, 510 |
| FaqI | GGGAC | 2 cut(s) | 53, 337 |
| FatI | CATG | 3 cut(s) | 231, 425, 451 |
| FauI | CCCGC | 2 cut(s) | 17, 132 |
| Fnu4HI | GCNGC | 7 cut(s) | 13, 214, 228, 282, 380, 579, 582 |
| FokI | GGATG | 2 cut(s) | 17, 497 |
| Fsp4HI | GCNGC | 7 cut(s) | 13, 214, 228, 282, 380, 579, 582 |
| GlaI | GCGC | 3 cut(s) | 295, 331, 367 |
| GluI | GCNGC | 7 cut(s) | 13, 214, 228, 282, 380, 579, 582 |
| GsaI | CCCAGC | 2 cut(s) | 70, 196 |
| GsuI | CTGGAG | 3 cut(s) | 92, 197, 438 |
| HaeII | RGCGCY | 1 cut(s) | 297 |
| HaeIII | GGCC | 2 cut(s) | 540, 590 |
| HapII | CCGG | 2 cut(s) | 518, 560 |
| HgaI | GACGC | 1 cut(s) | 357 |
| HhaI | GCGC | 3 cut(s) | 296, 332, 368 |
| Hin1I | GRCGYC | 1 cut(s) | 294 |
| Hin1II | CATG | 3 cut(s) | 235, 429, 455 |
| Hin6I | GCGC | 3 cut(s) | 294, 330, 366 |
| HinP1I | GCGC | 3 cut(s) | 294, 330, 366 |
| HinfI | GANTC | 2 cut(s) | 143, 350 |
| HpaII | CCGG | 2 cut(s) | 518, 560 |
| HphI | GGTGA | 5 cut(s) | 19, 178, 452, 508, 578 |
| Hpy188I | TCNGA | 2 cut(s) | 253, 531 |
| Hpy188III | TCNNGA | 3 cut(s) | 244, 432, 479 |
| Hpy99I | CGWCG | 1 cut(s) | 373 |
| HpyAV | CCTTC | 4 cut(s) | 88, 143, 214, 280 |
| HpyCH4III | ACNGT | 1 cut(s) | 151 |
| HpyCH4IV | ACGT | 1 cut(s) | 60 |
| HpyCH4V | TGCA | 2 cut(s) | 216, 425 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 113, 236, 287, 372, 385, 587 |
| HpyF3I | CTNAG | 3 cut(s) | 117, 204, 252 |
| HpySE526I | ACGT | 1 cut(s) | 60 |
| Hsp92I | GRCGYC | 1 cut(s) | 294 |
| Hsp92II | CATG | 3 cut(s) | 235, 429, 455 |
| HspAI | GCGC | 3 cut(s) | 294, 330, 366 |
| KasI | GGCGCC | 1 cut(s) | 293 |
| KspI | CCGCGG | 1 cut(s) | 13 |
| Kzo9I | GATC | 3 cut(s) | 97, 129, 526 |
| LmnI | GCTCC | 2 cut(s) | 73, 210 |
| Lsp1109I | GCAGC | 3 cut(s) | 200, 565, 568 |
| MaeII | ACGT | 1 cut(s) | 60 |
| MaeIII | GTNAC | 4 cut(s) | 25, 166, 446, 496 |
| MalI | GATC | 3 cut(s) | 99, 131, 528 |
| MbiI | CCGCTC | 1 cut(s) | 49 |
| MboI | GATC | 3 cut(s) | 97, 129, 526 |
| MboII | GAAGA | 1 cut(s) | 581 |
| MfeI | CAATTG | 1 cut(s) | 101 |
| MflI | RGATCY | 1 cut(s) | 129 |
| MlsI | TGGCCA | 1 cut(s) | 590 |
| MluCI | AATT | 2 cut(s) | 101, 311 |
| MluNI | TGGCCA | 1 cut(s) | 590 |
| Mly113I | GGCGCC | 1 cut(s) | 294 |
| MlyI | GAGTC | 1 cut(s) | 359 |
| Mox20I | TGGCCA | 1 cut(s) | 590 |
| MscI | TGGCCA | 1 cut(s) | 590 |
| MseI | TTAA | 3 cut(s) | 153, 303, 318 |
| Msp20I | TGGCCA | 1 cut(s) | 590 |
| MspA1I | CMGCKG | 4 cut(s) | 12, 70, 139, 196 |
| MspI | CCGG | 2 cut(s) | 518, 560 |
| MspR9I | CCNGG | 2 cut(s) | 519, 542 |
| MunI | CAATTG | 1 cut(s) | 101 |
| MvaI | CCWGG | 1 cut(s) | 542 |
| MvnI | CGCG | 3 cut(s) | 12, 332, 368 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 113, 236, 287, 372, 385, 587 |
| NarI | GGCGCC | 1 cut(s) | 294 |
| NciI | CCSGG | 1 cut(s) | 519 |
| NcoI | CCATGG | 2 cut(s) | 231, 451 |
| NdeII | GATC | 3 cut(s) | 97, 129, 526 |
| NlaIII | CATG | 3 cut(s) | 235, 429, 455 |
| NlaIV | GGNNCC | 2 cut(s) | 41, 295 |
| NmuCI | GTSAC | 4 cut(s) | 25, 166, 446, 496 |
| NspI | RCATGY | 1 cut(s) | 429 |
| PaeI | GCATGC | 1 cut(s) | 429 |
| PaeR7I | CTCGAG | 1 cut(s) | 477 |
| PfeI | GAWTC | 1 cut(s) | 143 |
| PflFI | GACNNNGTC | 1 cut(s) | 341 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 36 |
| PkrI | GCNGC | 7 cut(s) | 14, 215, 229, 283, 381, 580, 583 |
| PleI | GAGTC | 1 cut(s) | 358 |
| PluTI | GGCGCC | 1 cut(s) | 297 |
| PpsI | GAGTC | 1 cut(s) | 358 |
| Ppu21I | YACGTR | 1 cut(s) | 61 |
| PpuMI | RGGWCCY | 1 cut(s) | 40 |
| Psp5II | RGGWCCY | 1 cut(s) | 40 |
| Psp6I | CCWGG | 1 cut(s) | 540 |
| PspEI | GGTNACC | 1 cut(s) | 496 |
| PspFI | CCCAGC | 2 cut(s) | 66, 192 |
| PspGI | CCWGG | 1 cut(s) | 540 |
| PspN4I | GGNNCC | 2 cut(s) | 41, 295 |
| PspPI | GGNCC | 1 cut(s) | 40 |
| PspPPI | RGGWCCY | 1 cut(s) | 40 |
| PsuI | RGATCY | 1 cut(s) | 129 |
| PsyI | GACNNNGTC | 1 cut(s) | 341 |
| PvuII | CAGCTG | 2 cut(s) | 70, 196 |
| RsaI | GTAC | 1 cut(s) | 260 |
| RsaNI | GTAC | 1 cut(s) | 259 |
| SacII | CCGCGG | 1 cut(s) | 13 |
| SaqAI | TTAA | 3 cut(s) | 153, 303, 318 |
| SatI | GCNGC | 7 cut(s) | 13, 214, 228, 282, 380, 579, 582 |
| Sau3AI | GATC | 3 cut(s) | 97, 129, 526 |
| Sau96I | GGNCC | 1 cut(s) | 40 |
| SchI | GAGTC | 1 cut(s) | 359 |
| ScrFI | CCNGG | 2 cut(s) | 519, 542 |
| SfoI | GGCGCC | 1 cut(s) | 295 |
| Sfr274I | CTCGAG | 1 cut(s) | 477 |
| Sfr303I | CCGCGG | 1 cut(s) | 13 |
| SgrBI | CCGCGG | 1 cut(s) | 13 |
| SinI | GGWCC | 1 cut(s) | 40 |
| SlaI | CTCGAG | 1 cut(s) | 477 |
| SmlI | CTYRAG | 2 cut(s) | 44, 477 |
| SmoI | CTYRAG | 2 cut(s) | 44, 477 |
| SphI | GCATGC | 1 cut(s) | 429 |
| Sse9I | AATT | 2 cut(s) | 101, 311 |
| SsiI | CCGC | 9 cut(s) | 10, 12, 49, 139, 161, 228, 281, 380, 554 |
| SspDI | GGCGCC | 1 cut(s) | 293 |
| StyD4I | CCNGG | 2 cut(s) | 517, 540 |
| StyI | CCWWGG | 3 cut(s) | 111, 231, 451 |
| TaaI | ACNGT | 1 cut(s) | 151 |
| TaiI | ACGT | 1 cut(s) | 63 |
| TaqI | TCGA | 2 cut(s) | 371, 478 |
| TasI | AATT | 2 cut(s) | 101, 311 |
| TatI | WGTACW | 1 cut(s) | 258 |
| TauI | GCSGC | 4 cut(s) | 15, 230, 284, 382 |
| TfiI | GAWTC | 1 cut(s) | 143 |
| Tru1I | TTAA | 3 cut(s) | 153, 303, 318 |
| Tru9I | TTAA | 3 cut(s) | 153, 303, 318 |
| TseFI | GTSAC | 4 cut(s) | 25, 166, 446, 496 |
| TseI | GCWGC | 3 cut(s) | 213, 578, 581 |
| Tsp45I | GTSAC | 4 cut(s) | 25, 166, 446, 496 |
| Tth111I | GACNNNGTC | 1 cut(s) | 341 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 36 |
| VpaK11BI | GGWCC | 1 cut(s) | 40 |
| XceI | RCATGY | 1 cut(s) | 429 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 520 |
| XhoI | CTCGAG | 1 cut(s) | 477 |