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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 351, 800 |
| AccBSI | CCGCTC | 6 cut(s) | 109, 136, 274, 415, 427, 917 |
| AccI | GTMKAC | 2 cut(s) | 83, 339 |
| AccII | CGCG | 2 cut(s) | 80, 770 |
| AclWI | GGATC | 1 cut(s) | 502 |
| AcoI | YGGCCR | 2 cut(s) | 399, 600 |
| AcsI | RAATTY | 2 cut(s) | 113, 617 |
| AcuI | CTGAAG | 4 cut(s) | 181, 491, 497, 864 |
| AcyI | GRCGYC | 2 cut(s) | 352, 728 |
| AfaI | GTAC | 2 cut(s) | 826, 892 |
| AfeI | AGCGCT | 1 cut(s) | 648 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 109, 250, 330, 361, 414, 472, 517, 773, 921 |
| AflIII | ACRYGT | 1 cut(s) | 237 |
| AgsI | TTSAA | 1 cut(s) | 622 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 190 |
| AjnI | CCWGG | 3 cut(s) | 63, 420, 435 |
| AluBI | AGCT | 6 cut(s) | 201, 280, 313, 397, 448, 691 |
| AluI | AGCT | 6 cut(s) | 201, 280, 313, 397, 448, 691 |
| Alw26I | GTCTC | 1 cut(s) | 305 |
| AlwI | GGATC | 1 cut(s) | 502 |
| Ama87I | CYCGRG | 2 cut(s) | 263, 879 |
| Aor51HI | AGCGCT | 1 cut(s) | 648 |
| AoxI | GGCC | 5 cut(s) | 321, 399, 600, 743, 751 |
| ApeKI | GCWGC | 7 cut(s) | 259, 277, 377, 485, 605, 869, 961 |
| ApoI | RAATTY | 2 cut(s) | 113, 617 |
| AspLEI | GCGC | 3 cut(s) | 354, 649, 761 |
| AspS9I | GGNCC | 2 cut(s) | 418, 743 |
| AsuC2I | CCSGG | 2 cut(s) | 264, 265 |
| AsuHPI | GGTGA | 3 cut(s) | 349, 556, 983 |
| AvaI | CYCGRG | 2 cut(s) | 263, 879 |
| AvaII | GGWCC | 1 cut(s) | 418 |
| BanI | GGYRCC | 2 cut(s) | 351, 800 |
| BanII | GRGCYC | 2 cut(s) | 911, 978 |
| BauI | CACGAG | 4 cut(s) | 104, 387, 852, 918 |
| BbvCI | CCTCAGC | 1 cut(s) | 582 |
| BbvI | GCAGC | 7 cut(s) | 271, 289, 364, 472, 592, 856, 973 |
| BccI | CCATC | 1 cut(s) | 881 |
| BceAI | ACGGC | 2 cut(s) | 386, 730 |
| BciT130I | CCWGG | 3 cut(s) | 65, 422, 437 |
| BcnI | CCSGG | 2 cut(s) | 264, 265 |
| BcoDI | GTCTC | 1 cut(s) | 305 |
| BfaI | CTAG | 5 cut(s) | 140, 155, 245, 449, 554 |
| BfmI | CTRYAG | 1 cut(s) | 711 |
| BfoI | RGCGCY | 2 cut(s) | 355, 650 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 742 |
| BlpI | GCTNAGC | 1 cut(s) | 202 |
| Bme1390I | CCNGG | 5 cut(s) | 65, 264, 265, 422, 437 |
| Bme18I | GGWCC | 1 cut(s) | 418 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 190 |
| BmeT110I | CYCGRG | 2 cut(s) | 263, 879 |
| BmgT120I | GGNCC | 2 cut(s) | 418, 743 |
| BmiI | GGNNCC | 5 cut(s) | 15, 353, 419, 783, 802 |
| BmrFI | CCNGG | 5 cut(s) | 65, 264, 265, 422, 437 |
| BmsI | GCATC | 2 cut(s) | 364, 373 |
| BpmI | CTGGAG | 2 cut(s) | 287, 443 |
| Bpu10I | CCTNAGC | 2 cut(s) | 582, 808 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 202 |
| BpuEI | CTTGAG | 1 cut(s) | 266 |
| BpuMI | CCSGG | 2 cut(s) | 264, 265 |
| BsaBI | GATNNNNATC | 1 cut(s) | 506 |
| BsaHI | GRCGYC | 2 cut(s) | 352, 728 |
| BsaI | GGTCTC | 1 cut(s) | 305 |
| BsaJI | CCNNGG | 5 cut(s) | 263, 264, 324, 360, 978 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 109, 250, 330, 361, 414, 472, 517, 773, 921 |
| Bse8I | GATNNNNATC | 1 cut(s) | 506 |
| BseBI | CCWGG | 3 cut(s) | 65, 422, 437 |
| BseDI | CCNNGG | 5 cut(s) | 263, 264, 324, 360, 978 |
| BseGI | GGATG | 1 cut(s) | 388 |
| BseJI | GATNNNNATC | 1 cut(s) | 506 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 109, 250, 330, 361, 414, 472, 517, 773, 921 |
| BseMII | CTCAG | 5 cut(s) | 216, 573, 803, 822, 851 |
| BseRI | GAGGAG | 1 cut(s) | 302 |
| BseX3I | CGGCCG | 1 cut(s) | 600 |
| BseXI | GCAGC | 7 cut(s) | 271, 289, 364, 472, 592, 856, 973 |
| BseYI | CCCAGC | 3 cut(s) | 313, 732, 740 |
| BsgI | GTGCAG | 1 cut(s) | 215 |
| Bsh1236I | CGCG | 2 cut(s) | 80, 770 |
| Bsh1285I | CGRYCG | 1 cut(s) | 603 |
| BshFI | GGCC | 5 cut(s) | 323, 401, 602, 745, 753 |
| BshNI | GGYRCC | 2 cut(s) | 351, 800 |
| BsiEI | CGRYCG | 1 cut(s) | 603 |
| BsiHKCI | CYCGRG | 2 cut(s) | 263, 879 |
| BsiSI | CCGG | 2 cut(s) | 264, 965 |
| BslFI | GGGAC | 2 cut(s) | 431, 715 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 109, 250, 330, 361, 414, 472, 517, 773, 921 |
| BsmAI | GTCTC | 1 cut(s) | 305 |
| BsmFI | GGGAC | 2 cut(s) | 431, 715 |
| BsnI | GGCC | 5 cut(s) | 323, 401, 602, 745, 753 |
| Bso31I | GGTCTC | 1 cut(s) | 305 |
| BsoBI | CYCGRG | 2 cut(s) | 263, 879 |
| Bsp1286I | GDGCHC | 2 cut(s) | 911, 978 |
| Bsp143I | GATC | 3 cut(s) | 507, 533, 589 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 202 |
| BspANI | GGCC | 5 cut(s) | 323, 401, 602, 745, 753 |
| BspCNI | CTCAG | 5 cut(s) | 215, 574, 802, 821, 850 |
| BspFNI | CGCG | 2 cut(s) | 80, 770 |
| BspLI | GGNNCC | 5 cut(s) | 15, 353, 419, 783, 802 |
| BspPI | GGATC | 1 cut(s) | 502 |
| BspT107I | GGYRCC | 2 cut(s) | 351, 800 |
| BspTNI | GGTCTC | 1 cut(s) | 305 |
| BsrBI | CCGCTC | 6 cut(s) | 109, 136, 274, 415, 427, 917 |
| BssECI | CCNNGG | 5 cut(s) | 263, 264, 324, 360, 978 |
| BssMI | GATC | 3 cut(s) | 507, 533, 589 |
| BssNAI | GTATAC | 1 cut(s) | 84 |
| BssNI | GRCGYC | 2 cut(s) | 352, 728 |
| BssSI | CACGAG | 4 cut(s) | 104, 387, 852, 918 |
| BssT1I | CCWWGG | 2 cut(s) | 324, 360 |
| Bst1107I | GTATAC | 1 cut(s) | 84 |
| Bst2BI | CACGAG | 4 cut(s) | 104, 387, 852, 918 |
| Bst2UI | CCWGG | 3 cut(s) | 65, 422, 437 |
| Bst6I | CTCTTC | 1 cut(s) | 542 |
| BstACI | GRCGYC | 2 cut(s) | 352, 728 |
| BstDEI | CTNAG | 5 cut(s) | 202, 582, 789, 808, 837 |
| BstDSI | CCRYGG | 1 cut(s) | 978 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 359, 470 |
| BstF5I | GGATG | 1 cut(s) | 388 |
| BstFNI | CGCG | 2 cut(s) | 80, 770 |
| BstH2I | RGCGCY | 2 cut(s) | 355, 650 |
| BstHHI | GCGC | 3 cut(s) | 354, 649, 761 |
| BstKTI | GATC | 3 cut(s) | 510, 536, 592 |
| BstMAI | GTCTC | 1 cut(s) | 305 |
| BstMBI | GATC | 3 cut(s) | 507, 533, 589 |
| BstMCI | CGRYCG | 1 cut(s) | 603 |
| BstNI | CCWGG | 3 cut(s) | 65, 422, 437 |
| BstNSI | RCATGY | 1 cut(s) | 241 |
| BstSCI | CCNGG | 5 cut(s) | 63, 262, 263, 420, 435 |
| BstSFI | CTRYAG | 1 cut(s) | 711 |
| BstUI | CGCG | 2 cut(s) | 80, 770 |
| BstV1I | GCAGC | 7 cut(s) | 271, 289, 364, 472, 592, 856, 973 |
| BstX2I | RGATCY | 1 cut(s) | 507 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 740, 865 |
| BstYI | RGATCY | 1 cut(s) | 507 |
| BstZ17I | GTATAC | 1 cut(s) | 84 |
| BstZI | CGGCCG | 1 cut(s) | 600 |
| BsuRI | GGCC | 5 cut(s) | 323, 401, 602, 745, 753 |
| BtgI | CCRYGG | 1 cut(s) | 978 |
| BtsCI | GGATG | 1 cut(s) | 388 |
| BtsI | GCAGTG | 1 cut(s) | 761 |
| BtsIMutI | CAGTG | 1 cut(s) | 761 |
| CciNI | GCGGCCGC | 1 cut(s) | 600 |
| CfoI | GCGC | 3 cut(s) | 354, 649, 761 |
| Cfr13I | GGNCC | 2 cut(s) | 418, 743 |
| Cfr9I | CCCGGG | 1 cut(s) | 263 |
| CseI | GACGC | 2 cut(s) | 158, 717 |
| CsiI | ACCWGGT | 1 cut(s) | 435 |
| Csp6I | GTAC | 2 cut(s) | 825, 891 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 775, 810 |
| CviAII | CATG | 1 cut(s) | 238 |
| CviQI | GTAC | 2 cut(s) | 825, 891 |
| DdeI | CTNAG | 5 cut(s) | 202, 582, 789, 808, 837 |
| DinI | GGCGCC | 1 cut(s) | 353 |
| DpnI | GATC | 3 cut(s) | 509, 535, 591 |
| DpnII | GATC | 3 cut(s) | 507, 533, 589 |
| DriI | GACNNNNNGTC | 1 cut(s) | 190 |
| EaeI | YGGCCR | 2 cut(s) | 399, 600 |
| EagI | CGGCCG | 1 cut(s) | 600 |
| Eam1104I | CTCTTC | 1 cut(s) | 542 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 190 |
| EarI | CTCTTC | 1 cut(s) | 542 |
| EciI | GGCGGA | 3 cut(s) | 6, 629, 831 |
| EclXI | CGGCCG | 1 cut(s) | 600 |
| Eco130I | CCWWGG | 2 cut(s) | 324, 360 |
| Eco24I | GRGCYC | 2 cut(s) | 911, 978 |
| Eco31I | GGTCTC | 1 cut(s) | 305 |
| Eco47I | GGWCC | 1 cut(s) | 418 |
| Eco47III | AGCGCT | 1 cut(s) | 648 |
| Eco52I | CGGCCG | 1 cut(s) | 600 |
| Eco57I | CTGAAG | 4 cut(s) | 181, 491, 497, 864 |
| Eco88I | CYCGRG | 2 cut(s) | 263, 879 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 359, 470 |
| EcoO109I | RGGNCCY | 1 cut(s) | 418 |
| EcoRI | GAATTC | 1 cut(s) | 617 |
| EcoRII | CCWGG | 3 cut(s) | 63, 420, 435 |
| EcoT14I | CCWWGG | 2 cut(s) | 324, 360 |
| EcoT38I | GRGCYC | 2 cut(s) | 911, 978 |
| EgeI | GGCGCC | 1 cut(s) | 353 |
| EheI | GGCGCC | 1 cut(s) | 353 |
| ErhI | CCWWGG | 2 cut(s) | 324, 360 |
| FaeI | CATG | 1 cut(s) | 241 |
| FaiI | YATR | 9 cut(s) | 84, 216, 239, 461, 611, 639, 713, 866, 899 |
| FaqI | GGGAC | 2 cut(s) | 431, 715 |
| FatI | CATG | 1 cut(s) | 237 |
| FauI | CCCGC | 5 cut(s) | 102, 408, 510, 775, 837 |
| FblI | GTMKAC | 2 cut(s) | 83, 339 |
| FokI | GGATG | 1 cut(s) | 395 |
| FriOI | GRGCYC | 2 cut(s) | 911, 978 |
| FspBI | CTAG | 5 cut(s) | 140, 155, 245, 449, 554 |
| GlaI | GCGC | 3 cut(s) | 353, 648, 760 |
| GsaI | CCCAGC | 3 cut(s) | 317, 736, 744 |
| GsuI | CTGGAG | 2 cut(s) | 287, 443 |
| HaeII | RGCGCY | 2 cut(s) | 355, 650 |
| HaeIII | GGCC | 5 cut(s) | 323, 401, 602, 745, 753 |
| HapII | CCGG | 2 cut(s) | 264, 965 |
| HgaI | GACGC | 2 cut(s) | 158, 717 |
| HhaI | GCGC | 3 cut(s) | 354, 649, 761 |
| Hin1I | GRCGYC | 2 cut(s) | 352, 728 |
| Hin1II | CATG | 1 cut(s) | 241 |
| Hin6I | GCGC | 3 cut(s) | 352, 647, 759 |
| HinP1I | GCGC | 3 cut(s) | 352, 647, 759 |
| HincII | GTYRAC | 1 cut(s) | 696 |
| HindII | GTYRAC | 1 cut(s) | 696 |
| HinfI | GANTC | 4 cut(s) | 26, 68, 188, 521 |
| HpaII | CCGG | 2 cut(s) | 264, 965 |
| HphI | GGTGA | 3 cut(s) | 349, 556, 983 |
| Hpy166II | GTNNAC | 3 cut(s) | 84, 340, 696 |
| Hpy188I | TCNGA | 5 cut(s) | 792, 844, 906, 928, 949 |
| Hpy188III | TCNNGA | 3 cut(s) | 94, 155, 304 |
| Hpy8I | GTNNAC | 3 cut(s) | 84, 340, 696 |
| Hpy99I | CGWCG | 1 cut(s) | 407 |
| HpyAV | CCTTC | 9 cut(s) | 152, 205, 466, 484, 521, 658, 697, 718, 766 |
| HpyCH4V | TGCA | 4 cut(s) | 52, 179, 232, 454 |
| HpyF3I | CTNAG | 5 cut(s) | 202, 582, 789, 808, 837 |
| Hsp92I | GRCGYC | 2 cut(s) | 352, 728 |
| Hsp92II | CATG | 1 cut(s) | 241 |
| HspAI | GCGC | 3 cut(s) | 352, 647, 759 |
| KasI | GGCGCC | 1 cut(s) | 351 |
| Kzo9I | GATC | 3 cut(s) | 507, 533, 589 |
| LmnI | GCTCC | 5 cut(s) | 19, 310, 424, 688, 994 |
| Lsp1109I | GCAGC | 7 cut(s) | 271, 289, 364, 472, 592, 856, 973 |
| LweI | GCATC | 2 cut(s) | 364, 373 |
| MabI | ACCWGGT | 1 cut(s) | 435 |
| MaeI | CTAG | 5 cut(s) | 140, 155, 245, 449, 554 |
| MalI | GATC | 3 cut(s) | 509, 535, 591 |
| MbiI | CCGCTC | 6 cut(s) | 109, 136, 274, 415, 427, 917 |
| MboI | GATC | 3 cut(s) | 507, 533, 589 |
| MboII | GAAGA | 2 cut(s) | 511, 559 |
| MfeI | CAATTG | 1 cut(s) | 180 |
| MflI | RGATCY | 1 cut(s) | 507 |
| MhlI | GDGCHC | 2 cut(s) | 911, 978 |
| MluCI | AATT | 4 cut(s) | 113, 180, 617, 859 |
| Mly113I | GGCGCC | 1 cut(s) | 352 |
| MlyI | GAGTC | 2 cut(s) | 62, 530 |
| MmeI | TCCRAC | 2 cut(s) | 197, 205 |
| MseI | TTAA | 1 cut(s) | 294 |
| MspA1I | CMGCKG | 3 cut(s) | 517, 605, 632 |
| MspI | CCGG | 2 cut(s) | 264, 965 |
| MspR9I | CCNGG | 5 cut(s) | 65, 264, 265, 422, 437 |
| MunI | CAATTG | 1 cut(s) | 180 |
| MvaI | CCWGG | 3 cut(s) | 65, 422, 437 |
| MvnI | CGCG | 2 cut(s) | 80, 770 |
| NarI | GGCGCC | 1 cut(s) | 352 |
| NciI | CCSGG | 2 cut(s) | 264, 265 |
| NdeII | GATC | 3 cut(s) | 507, 533, 589 |
| NlaIII | CATG | 1 cut(s) | 241 |
| NlaIV | GGNNCC | 5 cut(s) | 15, 353, 419, 783, 802 |
| NotI | GCGGCCGC | 1 cut(s) | 600 |
| NspI | RCATGY | 1 cut(s) | 241 |
| PciI | ACATGT | 1 cut(s) | 237 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 77, 659 |
| PfeI | GAWTC | 2 cut(s) | 26, 188 |
| PleI | GAGTC | 2 cut(s) | 62, 529 |
| PluTI | GGCGCC | 1 cut(s) | 355 |
| PpsI | GAGTC | 2 cut(s) | 62, 529 |
| PpuMI | RGGWCCY | 1 cut(s) | 418 |
| PscI | ACATGT | 1 cut(s) | 237 |
| Psp5II | RGGWCCY | 1 cut(s) | 418 |
| Psp6I | CCWGG | 3 cut(s) | 63, 420, 435 |
| PspFI | CCCAGC | 3 cut(s) | 313, 732, 740 |
| PspGI | CCWGG | 3 cut(s) | 63, 420, 435 |
| PspN4I | GGNNCC | 5 cut(s) | 15, 353, 419, 783, 802 |
| PspPI | GGNCC | 2 cut(s) | 418, 743 |
| PspPPI | RGGWCCY | 1 cut(s) | 418 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 74, 106 |
| PsuI | RGATCY | 1 cut(s) | 507 |
| RsaI | GTAC | 2 cut(s) | 826, 892 |
| RsaNI | GTAC | 2 cut(s) | 825, 891 |
| SaqAI | TTAA | 1 cut(s) | 294 |
| Sau3AI | GATC | 3 cut(s) | 507, 533, 589 |
| Sau96I | GGNCC | 2 cut(s) | 418, 743 |
| SchI | GAGTC | 2 cut(s) | 62, 530 |
| ScrFI | CCNGG | 5 cut(s) | 65, 264, 265, 422, 437 |
| SduI | GDGCHC | 2 cut(s) | 911, 978 |
| SexAI | ACCWGGT | 1 cut(s) | 435 |
| SfaNI | GCATC | 2 cut(s) | 364, 373 |
| SfcI | CTRYAG | 1 cut(s) | 711 |
| SfoI | GGCGCC | 1 cut(s) | 353 |
| SinI | GGWCC | 1 cut(s) | 418 |
| SmaI | CCCGGG | 1 cut(s) | 265 |
| SmlI | CTYRAG | 1 cut(s) | 281 |
| SmoI | CTYRAG | 1 cut(s) | 281 |
| Sse9I | AATT | 4 cut(s) | 113, 180, 617, 859 |
| SspDI | GGCGCC | 1 cut(s) | 351 |
| SspMI | CTAG | 5 cut(s) | 140, 155, 245, 449, 554 |
| StyD4I | CCNGG | 5 cut(s) | 63, 262, 263, 420, 435 |
| StyI | CCWWGG | 2 cut(s) | 324, 360 |
| TaqII | GACCGA | 1 cut(s) | 113 |
| TasI | AATT | 4 cut(s) | 113, 180, 617, 859 |
| TfiI | GAWTC | 2 cut(s) | 26, 188 |
| Tru1I | TTAA | 1 cut(s) | 294 |
| Tru9I | TTAA | 1 cut(s) | 294 |
| TscAI | CASTG | 1 cut(s) | 768 |
| TseI | GCWGC | 7 cut(s) | 259, 277, 377, 485, 605, 869, 961 |
| TspGWI | ACGGA | 2 cut(s) | 19, 668 |
| TspMI | CCCGGG | 1 cut(s) | 263 |
| TspRI | CASTG | 1 cut(s) | 768 |
| VpaK11BI | GGWCC | 1 cut(s) | 418 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 359, 470 |
| XapI | RAATTY | 2 cut(s) | 113, 617 |
| XbaI | TCTAGA | 1 cut(s) | 154 |
| XceI | RCATGY | 1 cut(s) | 241 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 331 |
| XmaI | CCCGGG | 1 cut(s) | 263 |
| XmiI | GTMKAC | 2 cut(s) | 83, 339 |
| XspI | CTAG | 5 cut(s) | 140, 155, 245, 449, 554 |