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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 931, 1328 |
| Acc16I | TGCGCA | 1 cut(s) | 367 |
| Acc36I | ACCTGC | 3 cut(s) | 17, 931, 1328 |
| AccB1I | GGYRCC | 3 cut(s) | 145, 1169, 1270 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 43, 1179 |
| AccBSI | CCGCTC | 1 cut(s) | 773 |
| AccI | GTMKAC | 3 cut(s) | 179, 432, 966 |
| AccII | CGCG | 5 cut(s) | 190, 192, 207, 303, 562 |
| AccIII | TCCGGA | 1 cut(s) | 775 |
| AclWI | GGATC | 1 cut(s) | 1424 |
| AcoI | YGGCCR | 3 cut(s) | 628, 820, 871 |
| AcsI | RAATTY | 1 cut(s) | 785 |
| AcuI | CTGAAG | 2 cut(s) | 1178, 1305 |
| AcyI | GRCGYC | 4 cut(s) | 13, 146, 513, 1170 |
| AfaI | GTAC | 3 cut(s) | 138, 638, 1390 |
| AfeI | AGCGCT | 1 cut(s) | 78 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 43, 463, 544, 731, 979, 1179 |
| AgsI | TTSAA | 3 cut(s) | 65, 857, 915 |
| AjnI | CCWGG | 5 cut(s) | 456, 903, 1031, 1242, 1383 |
| AleI | CACNNNNGTG | 1 cut(s) | 801 |
| AluBI | AGCT | 3 cut(s) | 356, 898, 1153 |
| AluI | AGCT | 3 cut(s) | 356, 898, 1153 |
| Alw26I | GTCTC | 2 cut(s) | 1325, 1409 |
| AlwI | GGATC | 1 cut(s) | 1424 |
| Ama87I | CYCGRG | 1 cut(s) | 1293 |
| Aor13HI | TCCGGA | 1 cut(s) | 775 |
| Aor51HI | AGCGCT | 1 cut(s) | 78 |
| AoxI | GGCC | 9 cut(s) | 414, 505, 628, 684, 820, 871, 996, 1029, 1296 |
| ApoI | RAATTY | 1 cut(s) | 785 |
| AspLEI | GCGC | 9 cut(s) | 79, 148, 192, 305, 368, 562, 1172, 1215, 1315 |
| AspS9I | GGNCC | 8 cut(s) | 96, 415, 506, 547, 838, 1263, 1296, 1369 |
| AsuC2I | CCSGG | 5 cut(s) | 321, 406, 1268, 1294, 1295 |
| AsuHPI | GGTGA | 6 cut(s) | 256, 679, 709, 1135, 1195, 1373 |
| AvaI | CYCGRG | 1 cut(s) | 1293 |
| AvaII | GGWCC | 5 cut(s) | 96, 547, 838, 1263, 1369 |
| BaeGI | GKGCMC | 1 cut(s) | 1275 |
| BanI | GGYRCC | 3 cut(s) | 145, 1169, 1270 |
| BanII | GRGCYC | 2 cut(s) | 530, 1352 |
| BauI | CACGAG | 1 cut(s) | 1359 |
| BbsI | GAAGAC | 2 cut(s) | 251, 616 |
| BbvCI | CCTCAGC | 2 cut(s) | 1023, 1257 |
| BccI | CCATC | 5 cut(s) | 50, 824, 1108, 1198, 1343 |
| BceAI | ACGGC | 2 cut(s) | 850, 1055 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1192, 1226 |
| BciT130I | CCWGG | 5 cut(s) | 458, 905, 1033, 1244, 1385 |
| BclI | TGATCA | 1 cut(s) | 1234 |
| BcnI | CCSGG | 5 cut(s) | 321, 406, 1268, 1294, 1295 |
| BcoDI | GTCTC | 2 cut(s) | 1325, 1409 |
| BfaI | CTAG | 4 cut(s) | 213, 446, 1218, 1307 |
| BfmI | CTRYAG | 1 cut(s) | 72 |
| BfoI | RGCGCY | 3 cut(s) | 80, 149, 1173 |
| BfuAI | ACCTGC | 3 cut(s) | 17, 931, 1328 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1076 |
| Bme18I | GGWCC | 5 cut(s) | 96, 547, 838, 1263, 1369 |
| BmeT110I | CYCGRG | 1 cut(s) | 1293 |
| BmgT120I | GGNCC | 8 cut(s) | 96, 415, 506, 547, 838, 1263, 1296, 1369 |
| BmiI | GGNNCC | 7 cut(s) | 147, 468, 548, 549, 1171, 1265, 1272 |
| BmrI | ACTGGG | 1 cut(s) | 1189 |
| BmsI | GCATC | 1 cut(s) | 508 |
| BmuI | ACTGGG | 1 cut(s) | 1189 |
| BoxI | GACNNNNGTC | 1 cut(s) | 255 |
| BpiI | GAAGAC | 2 cut(s) | 251, 616 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1199, 1231 |
| BpmI | CTGGAG | 2 cut(s) | 453, 959 |
| Bpu10I | CCTNAGC | 3 cut(s) | 951, 1023, 1257 |
| BpuEI | CTTGAG | 1 cut(s) | 602 |
| BpuMI | CCSGG | 5 cut(s) | 321, 406, 1268, 1294, 1295 |
| BsaHI | GRCGYC | 4 cut(s) | 13, 146, 513, 1170 |
| BsaI | GGTCTC | 2 cut(s) | 1325, 1409 |
| BsaJI | CCNNGG | 6 cut(s) | 149, 993, 999, 1266, 1293, 1384 |
| BsaWI | WCCGGW | 1 cut(s) | 775 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 731, 761 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 43, 463, 544, 731, 979, 1179 |
| Bse118I | RCCGGY | 2 cut(s) | 266, 1402 |
| Bse1I | ACTGG | 4 cut(s) | 470, 493, 1184, 1377 |
| BseAI | TCCGGA | 1 cut(s) | 775 |
| BseBI | CCWGG | 5 cut(s) | 458, 905, 1033, 1244, 1385 |
| BseDI | CCNNGG | 6 cut(s) | 149, 993, 999, 1266, 1293, 1384 |
| BseGI | GGATG | 3 cut(s) | 835, 969, 1255 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 43, 463, 544, 731, 979, 1179 |
| BseMII | CTCAG | 7 cut(s) | 1014, 1028, 1050, 1208, 1271, 1292, 1409 |
| BseNI | ACTGG | 4 cut(s) | 470, 493, 1184, 1377 |
| BseSI | GKGCMC | 1 cut(s) | 1275 |
| BseX3I | CGGCCG | 1 cut(s) | 628 |
| BseYI | CCCAGC | 2 cut(s) | 270, 811 |
| BsgI | GTGCAG | 1 cut(s) | 102 |
| Bsh1236I | CGCG | 5 cut(s) | 190, 192, 207, 303, 562 |
| Bsh1285I | CGRYCG | 1 cut(s) | 631 |
| BshFI | GGCC | 9 cut(s) | 416, 507, 630, 686, 822, 873, 998, 1031, 1298 |
| BshNI | GGYRCC | 3 cut(s) | 145, 1169, 1270 |
| BsiEI | CGRYCG | 1 cut(s) | 631 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1293 |
| BsiSI | CCGG | 7 cut(s) | 267, 320, 405, 776, 1268, 1294, 1403 |
| BslFI | GGGAC | 4 cut(s) | 321, 533, 847, 1276 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 43, 463, 544, 731, 979, 1179 |
| BsmAI | GTCTC | 2 cut(s) | 1325, 1409 |
| BsmFI | GGGAC | 4 cut(s) | 321, 533, 847, 1276 |
| BsmI | GAATGC | 1 cut(s) | 60 |
| BsnI | GGCC | 9 cut(s) | 416, 507, 630, 686, 822, 873, 998, 1031, 1298 |
| Bso31I | GGTCTC | 2 cut(s) | 1325, 1409 |
| BsoBI | CYCGRG | 1 cut(s) | 1293 |
| Bsp1286I | GDGCHC | 3 cut(s) | 530, 1275, 1352 |
| Bsp13I | TCCGGA | 1 cut(s) | 775 |
| Bsp1407I | TGTACA | 1 cut(s) | 136 |
| Bsp143I | GATC | 2 cut(s) | 1234, 1429 |
| BspANI | GGCC | 9 cut(s) | 416, 507, 630, 686, 822, 873, 998, 1031, 1298 |
| BspCNI | CTCAG | 7 cut(s) | 1015, 1029, 1051, 1207, 1270, 1291, 1408 |
| BspEI | TCCGGA | 1 cut(s) | 775 |
| BspFNI | CGCG | 5 cut(s) | 190, 192, 207, 303, 562 |
| BspHI | TCATGA | 1 cut(s) | 1338 |
| BspLI | GGNNCC | 7 cut(s) | 147, 468, 548, 549, 1171, 1265, 1272 |
| BspMI | ACCTGC | 3 cut(s) | 17, 931, 1328 |
| BspPI | GGATC | 1 cut(s) | 1424 |
| BspT107I | GGYRCC | 3 cut(s) | 145, 1169, 1270 |
| BspTNI | GGTCTC | 2 cut(s) | 1325, 1409 |
| BsrBI | CCGCTC | 1 cut(s) | 773 |
| BsrFI | RCCGGY | 2 cut(s) | 266, 1402 |
| BsrGI | TGTACA | 1 cut(s) | 136 |
| BsrI | ACTGG | 4 cut(s) | 470, 493, 1184, 1377 |
| BssAI | RCCGGY | 2 cut(s) | 266, 1402 |
| BssECI | CCNNGG | 6 cut(s) | 149, 993, 999, 1266, 1293, 1384 |
| BssMI | GATC | 2 cut(s) | 1234, 1429 |
| BssNAI | GTATAC | 1 cut(s) | 180 |
| BssNI | GRCGYC | 4 cut(s) | 13, 146, 513, 1170 |
| BssSI | CACGAG | 1 cut(s) | 1359 |
| BssT1I | CCWWGG | 2 cut(s) | 149, 993 |
| Bst1107I | GTATAC | 1 cut(s) | 180 |
| Bst2BI | CACGAG | 1 cut(s) | 1359 |
| Bst2UI | CCWGG | 5 cut(s) | 458, 905, 1033, 1244, 1385 |
| Bst4CI | ACNGT | 3 cut(s) | 667, 703, 838 |
| Bst6I | CTCTTC | 2 cut(s) | 192, 1407 |
| BstACI | GRCGYC | 4 cut(s) | 13, 146, 513, 1170 |
| BstAUI | TGTACA | 1 cut(s) | 136 |
| BstC8I | GCNNGC | 5 cut(s) | 162, 169, 684, 1107, 1200 |
| BstDEI | CTNAG | 8 cut(s) | 951, 1023, 1037, 1059, 1194, 1257, 1278, 1395 |
| BstDSI | CCRYGG | 1 cut(s) | 999 |
| BstEII | GGTNACC | 1 cut(s) | 697 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 977 |
| BstF5I | GGATG | 3 cut(s) | 835, 969, 1255 |
| BstFNI | CGCG | 5 cut(s) | 190, 192, 207, 303, 562 |
| BstH2I | RGCGCY | 3 cut(s) | 80, 149, 1173 |
| BstHHI | GCGC | 9 cut(s) | 79, 148, 192, 305, 368, 562, 1172, 1215, 1315 |
| BstKTI | GATC | 2 cut(s) | 1237, 1432 |
| BstMAI | GTCTC | 2 cut(s) | 1325, 1409 |
| BstMBI | GATC | 2 cut(s) | 1234, 1429 |
| BstMCI | CGRYCG | 1 cut(s) | 631 |
| BstNI | CCWGG | 5 cut(s) | 458, 905, 1033, 1244, 1385 |
| BstNSI | RCATGY | 1 cut(s) | 397 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 255 |
| BstPI | GGTNACC | 1 cut(s) | 697 |
| BstSFI | CTRYAG | 1 cut(s) | 72 |
| BstSLI | GKGCMC | 1 cut(s) | 1275 |
| BstUI | CGCG | 5 cut(s) | 190, 192, 207, 303, 562 |
| BstV2I | GAAGAC | 2 cut(s) | 251, 616 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 358, 409, 1384 |
| BstZ17I | GTATAC | 1 cut(s) | 180 |
| BstZI | CGGCCG | 1 cut(s) | 628 |
| BsuRI | GGCC | 9 cut(s) | 416, 507, 630, 686, 822, 873, 998, 1031, 1298 |
| BtgI | CCRYGG | 1 cut(s) | 999 |
| BtsCI | GGATG | 3 cut(s) | 835, 969, 1255 |
| BtsIMutI | CAGTG | 2 cut(s) | 477, 1056 |
| BveI | ACCTGC | 3 cut(s) | 17, 931, 1328 |
| Cac8I | GCNNGC | 5 cut(s) | 162, 169, 684, 1107, 1200 |
| CciI | TCATGA | 1 cut(s) | 1338 |
| CfoI | GCGC | 9 cut(s) | 79, 148, 192, 305, 368, 562, 1172, 1215, 1315 |
| Cfr10I | RCCGGY | 2 cut(s) | 266, 1402 |
| Cfr13I | GGNCC | 8 cut(s) | 96, 415, 506, 547, 838, 1263, 1296, 1369 |
| Cfr9I | CCCGGG | 1 cut(s) | 1293 |
| CseI | GACGC | 3 cut(s) | 2, 196, 521 |
| Csp6I | GTAC | 3 cut(s) | 137, 637, 1389 |
| CviAII | CATG | 5 cut(s) | 140, 394, 1111, 1238, 1339 |
| CviQI | GTAC | 3 cut(s) | 137, 637, 1389 |
| DdeI | CTNAG | 8 cut(s) | 951, 1023, 1037, 1059, 1194, 1257, 1278, 1395 |
| DinI | GGCGCC | 2 cut(s) | 147, 1171 |
| DpnI | GATC | 2 cut(s) | 1236, 1431 |
| DpnII | GATC | 2 cut(s) | 1234, 1429 |
| EaeI | YGGCCR | 3 cut(s) | 628, 820, 871 |
| EagI | CGGCCG | 1 cut(s) | 628 |
| Eam1104I | CTCTTC | 2 cut(s) | 192, 1407 |
| EarI | CTCTTC | 2 cut(s) | 192, 1407 |
| EciI | GGCGGA | 5 cut(s) | 123, 247, 306, 476, 739 |
| EclXI | CGGCCG | 1 cut(s) | 628 |
| Eco130I | CCWWGG | 2 cut(s) | 149, 993 |
| Eco147I | AGGCCT | 1 cut(s) | 686 |
| Eco24I | GRGCYC | 2 cut(s) | 530, 1352 |
| Eco31I | GGTCTC | 2 cut(s) | 1325, 1409 |
| Eco47I | GGWCC | 5 cut(s) | 96, 547, 838, 1263, 1369 |
| Eco47III | AGCGCT | 1 cut(s) | 78 |
| Eco52I | CGGCCG | 1 cut(s) | 628 |
| Eco57I | CTGAAG | 2 cut(s) | 1178, 1305 |
| Eco88I | CYCGRG | 1 cut(s) | 1293 |
| Eco91I | GGTNACC | 1 cut(s) | 697 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 977 |
| EcoO109I | RGGNCCY | 1 cut(s) | 547 |
| EcoO65I | GGTNACC | 1 cut(s) | 697 |
| EcoRI | GAATTC | 1 cut(s) | 785 |
| EcoRII | CCWGG | 5 cut(s) | 456, 903, 1031, 1242, 1383 |
| EcoT14I | CCWWGG | 2 cut(s) | 149, 993 |
| EcoT38I | GRGCYC | 2 cut(s) | 530, 1352 |
| EgeI | GGCGCC | 2 cut(s) | 147, 1171 |
| EheI | GGCGCC | 2 cut(s) | 147, 1171 |
| ErhI | CCWWGG | 2 cut(s) | 149, 993 |
| FaeI | CATG | 5 cut(s) | 143, 397, 1114, 1241, 1342 |
| FaqI | GGGAC | 4 cut(s) | 321, 533, 847, 1276 |
| FatI | CATG | 5 cut(s) | 139, 393, 1110, 1237, 1338 |
| FauI | CCCGC | 4 cut(s) | 153, 539, 555, 1122 |
| FbaI | TGATCA | 1 cut(s) | 1234 |
| FblI | GTMKAC | 3 cut(s) | 179, 432, 966 |
| FokI | GGATG | 3 cut(s) | 842, 956, 1262 |
| FriOI | GRGCYC | 2 cut(s) | 530, 1352 |
| FspBI | CTAG | 4 cut(s) | 213, 446, 1218, 1307 |
| FspI | TGCGCA | 1 cut(s) | 367 |
| GlaI | GCGC | 9 cut(s) | 78, 147, 191, 304, 367, 561, 1171, 1214, 1314 |
| GsaI | CCCAGC | 2 cut(s) | 274, 815 |
| GsuI | CTGGAG | 2 cut(s) | 453, 959 |
| HaeII | RGCGCY | 3 cut(s) | 80, 149, 1173 |
| HaeIII | GGCC | 9 cut(s) | 416, 507, 630, 686, 822, 873, 998, 1031, 1298 |
| HapII | CCGG | 7 cut(s) | 267, 320, 405, 776, 1268, 1294, 1403 |
| HgaI | GACGC | 3 cut(s) | 2, 196, 521 |
| HhaI | GCGC | 9 cut(s) | 79, 148, 192, 305, 368, 562, 1172, 1215, 1315 |
| Hin1I | GRCGYC | 4 cut(s) | 13, 146, 513, 1170 |
| Hin1II | CATG | 5 cut(s) | 143, 397, 1114, 1241, 1342 |
| Hin6I | GCGC | 9 cut(s) | 77, 146, 190, 303, 366, 560, 1170, 1213, 1313 |
| HinP1I | GCGC | 9 cut(s) | 77, 146, 190, 303, 366, 560, 1170, 1213, 1313 |
| HincII | GTYRAC | 6 cut(s) | 297, 375, 433, 967, 1092, 1426 |
| HindII | GTYRAC | 6 cut(s) | 297, 375, 433, 967, 1092, 1426 |
| HinfI | GANTC | 6 cut(s) | 235, 311, 334, 603, 740, 983 |
| HpaI | GTTAAC | 1 cut(s) | 297 |
| HpaII | CCGG | 7 cut(s) | 267, 320, 405, 776, 1268, 1294, 1403 |
| HphI | GGTGA | 6 cut(s) | 256, 679, 709, 1135, 1195, 1373 |
| Hpy166II | GTNNAC | 8 cut(s) | 137, 180, 297, 375, 433, 967, 1092, 1426 |
| Hpy188I | TCNGA | 3 cut(s) | 768, 1285, 1369 |
| Hpy188III | TCNNGA | 5 cut(s) | 290, 776, 976, 1339, 1443 |
| Hpy8I | GTNNAC | 8 cut(s) | 137, 180, 297, 375, 433, 967, 1092, 1426 |
| Hpy99I | CGWCG | 2 cut(s) | 18, 434 |
| HpyAV | CCTTC | 4 cut(s) | 87, 688, 955, 973 |
| HpyCH4III | ACNGT | 3 cut(s) | 667, 703, 838 |
| HpyCH4V | TGCA | 5 cut(s) | 119, 157, 656, 892, 1009 |
| HpyF3I | CTNAG | 8 cut(s) | 951, 1023, 1037, 1059, 1194, 1257, 1278, 1395 |
| Hsp92I | GRCGYC | 4 cut(s) | 13, 146, 513, 1170 |
| Hsp92II | CATG | 5 cut(s) | 143, 397, 1114, 1241, 1342 |
| HspAI | GCGC | 9 cut(s) | 77, 146, 190, 303, 366, 560, 1170, 1213, 1313 |
| KasI | GGCGCC | 2 cut(s) | 145, 1169 |
| KflI | GGGWCCC | 1 cut(s) | 547 |
| Kpn2I | TCCGGA | 1 cut(s) | 775 |
| Ksp22I | TGATCA | 1 cut(s) | 1234 |
| KspAI | GTTAAC | 1 cut(s) | 297 |
| Kzo9I | GATC | 2 cut(s) | 1234, 1429 |
| LmnI | GCTCC | 4 cut(s) | 472, 778, 937, 1150 |
| LweI | GCATC | 1 cut(s) | 508 |
| MaeI | CTAG | 4 cut(s) | 213, 446, 1218, 1307 |
| MaeIII | GTNAC | 2 cut(s) | 697, 1379 |
| MalI | GATC | 2 cut(s) | 1236, 1431 |
| MbiI | CCGCTC | 1 cut(s) | 773 |
| MboI | GATC | 2 cut(s) | 1234, 1429 |
| MboII | GAAGA | 5 cut(s) | 209, 251, 616, 682, 1424 |
| MhlI | GDGCHC | 3 cut(s) | 530, 1275, 1352 |
| MluCI | AATT | 3 cut(s) | 379, 785, 1438 |
| Mly113I | GGCGCC | 2 cut(s) | 146, 1170 |
| MlyI | GAGTC | 3 cut(s) | 343, 612, 734 |
| MmeI | TCCRAC | 3 cut(s) | 123, 580, 996 |
| MroI | TCCGGA | 1 cut(s) | 775 |
| MseI | TTAA | 2 cut(s) | 296, 1083 |
| MslI | CAYNNNNRTG | 1 cut(s) | 801 |
| MspA1I | CMGCKG | 4 cut(s) | 160, 633, 1261, 1421 |
| MspI | CCGG | 7 cut(s) | 267, 320, 405, 776, 1268, 1294, 1403 |
| Mva1269I | GAATGC | 1 cut(s) | 60 |
| MvaI | CCWGG | 5 cut(s) | 458, 905, 1033, 1244, 1385 |
| MvnI | CGCG | 5 cut(s) | 190, 192, 207, 303, 562 |
| NarI | GGCGCC | 2 cut(s) | 146, 1170 |
| NciI | CCSGG | 5 cut(s) | 321, 406, 1268, 1294, 1295 |
| NdeII | GATC | 2 cut(s) | 1234, 1429 |
| NlaIII | CATG | 5 cut(s) | 143, 397, 1114, 1241, 1342 |
| NlaIV | GGNNCC | 7 cut(s) | 147, 468, 548, 549, 1171, 1265, 1272 |
| NmeAIII | GCCGAG | 1 cut(s) | 955 |
| NmuCI | GTSAC | 2 cut(s) | 697, 1379 |
| NsbI | TGCGCA | 1 cut(s) | 367 |
| NspI | RCATGY | 1 cut(s) | 397 |
| OliI | CACNNNNGTG | 1 cut(s) | 801 |
| PagI | TCATGA | 1 cut(s) | 1338 |
| PaqCI | CACCTGC | 2 cut(s) | 931, 1328 |
| PceI | AGGCCT | 1 cut(s) | 686 |
| PctI | GAATGC | 1 cut(s) | 60 |
| PfeI | GAWTC | 3 cut(s) | 235, 311, 983 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 43, 1179 |
| PleI | GAGTC | 3 cut(s) | 342, 611, 734 |
| PluTI | GGCGCC | 2 cut(s) | 149, 1173 |
| PpsI | GAGTC | 3 cut(s) | 342, 611, 734 |
| PpuMI | RGGWCCY | 1 cut(s) | 547 |
| PshAI | GACNNNNGTC | 1 cut(s) | 255 |
| Psp5II | RGGWCCY | 1 cut(s) | 547 |
| Psp6I | CCWGG | 5 cut(s) | 456, 903, 1031, 1242, 1383 |
| PspEI | GGTNACC | 1 cut(s) | 697 |
| PspFI | CCCAGC | 2 cut(s) | 270, 811 |
| PspGI | CCWGG | 5 cut(s) | 456, 903, 1031, 1242, 1383 |
| PspN4I | GGNNCC | 7 cut(s) | 147, 468, 548, 549, 1171, 1265, 1272 |
| PspPI | GGNCC | 8 cut(s) | 96, 415, 506, 547, 838, 1263, 1296, 1369 |
| PspPPI | RGGWCCY | 1 cut(s) | 547 |
| RsaI | GTAC | 3 cut(s) | 138, 638, 1390 |
| RsaNI | GTAC | 3 cut(s) | 137, 637, 1389 |
| RseI | CAYNNNNRTG | 1 cut(s) | 801 |
| SalI | GTCGAC | 2 cut(s) | 431, 965 |
| SaqAI | TTAA | 2 cut(s) | 296, 1083 |
| Sau3AI | GATC | 2 cut(s) | 1234, 1429 |
| Sau96I | GGNCC | 8 cut(s) | 96, 415, 506, 547, 838, 1263, 1296, 1369 |
| SchI | GAGTC | 3 cut(s) | 343, 612, 734 |
| SduI | GDGCHC | 3 cut(s) | 530, 1275, 1352 |
| SfaNI | GCATC | 1 cut(s) | 508 |
| SfcI | CTRYAG | 1 cut(s) | 72 |
| SfoI | GGCGCC | 2 cut(s) | 147, 1171 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1402 |
| SinI | GGWCC | 5 cut(s) | 96, 547, 838, 1263, 1369 |
| SmaI | CCCGGG | 1 cut(s) | 1295 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 801 |
| SmlI | CTYRAG | 1 cut(s) | 617 |
| SmoI | CTYRAG | 1 cut(s) | 617 |
| Sse9I | AATT | 3 cut(s) | 379, 785, 1438 |
| SseBI | AGGCCT | 1 cut(s) | 686 |
| SspDI | GGCGCC | 2 cut(s) | 145, 1169 |
| SspMI | CTAG | 4 cut(s) | 213, 446, 1218, 1307 |
| StuI | AGGCCT | 1 cut(s) | 686 |
| StyI | CCWWGG | 2 cut(s) | 149, 993 |
| TaaI | ACNGT | 3 cut(s) | 667, 703, 838 |
| TaqI | TCGA | 4 cut(s) | 432, 570, 966, 1346 |
| TasI | AATT | 3 cut(s) | 379, 785, 1438 |
| TatI | WGTACW | 1 cut(s) | 136 |
| TauI | GCSGC | 4 cut(s) | 50, 416, 633, 950 |
| TfiI | GAWTC | 3 cut(s) | 235, 311, 983 |
| Tru1I | TTAA | 2 cut(s) | 296, 1083 |
| Tru9I | TTAA | 2 cut(s) | 296, 1083 |
| TscAI | CASTG | 2 cut(s) | 477, 1063 |
| TseFI | GTSAC | 2 cut(s) | 697, 1379 |
| Tsp45I | GTSAC | 2 cut(s) | 697, 1379 |
| TspGWI | ACGGA | 2 cut(s) | 1016, 1109 |
| TspMI | CCCGGG | 1 cut(s) | 1293 |
| TspRI | CASTG | 2 cut(s) | 477, 1063 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 43, 1179 |
| VpaK11BI | GGWCC | 5 cut(s) | 96, 547, 838, 1263, 1369 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 977 |
| XapI | RAATTY | 1 cut(s) | 785 |
| XceI | RCATGY | 1 cut(s) | 397 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 500, 1306 |
| XmaI | CCCGGG | 1 cut(s) | 1293 |
| XmiI | GTMKAC | 3 cut(s) | 179, 432, 966 |
| XspI | CTAG | 4 cut(s) | 213, 446, 1218, 1307 |