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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 76, 365 |
| AciI | CCGC | 9 cut(s) | 76, 103, 131, 173, 205, 238, 269, 363, 365 |
| AcoI | YGGCCR | 1 cut(s) | 366 |
| AcuI | CTGAAG | 3 cut(s) | 158, 246, 358 |
| AcyI | GRCGYC | 1 cut(s) | 288 |
| AfaI | GTAC | 1 cut(s) | 326 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 102 |
| AluBI | AGCT | 5 cut(s) | 136, 169, 262, 296, 382 |
| AluI | AGCT | 5 cut(s) | 136, 169, 262, 296, 382 |
| Alw21I | GWGCWC | 1 cut(s) | 117 |
| Ama87I | CYCGRG | 1 cut(s) | 23 |
| AoxI | GGCC | 2 cut(s) | 252, 366 |
| ApeKI | GCWGC | 4 cut(s) | 202, 241, 293, 344 |
| AspLEI | GCGC | 1 cut(s) | 76 |
| AspS9I | GGNCC | 1 cut(s) | 252 |
| AsuHPI | GGTGA | 3 cut(s) | 79, 173, 193 |
| AvaI | CYCGRG | 1 cut(s) | 23 |
| Bbv12I | GWGCWC | 1 cut(s) | 117 |
| BbvI | GCAGC | 4 cut(s) | 214, 228, 305, 331 |
| BceAI | ACGGC | 1 cut(s) | 357 |
| BisI | GCNGC | 7 cut(s) | 174, 203, 239, 242, 294, 345, 366 |
| BlsI | GCNGC | 7 cut(s) | 175, 204, 240, 243, 295, 346, 367 |
| BmeT110I | CYCGRG | 1 cut(s) | 23 |
| BmgT120I | GGNCC | 1 cut(s) | 252 |
| BmiI | GGNNCC | 1 cut(s) | 361 |
| BpmI | CTGGAG | 1 cut(s) | 404 |
| Bpu10I | CCTNAGC | 1 cut(s) | 177 |
| BsaHI | GRCGYC | 1 cut(s) | 288 |
| BsaJI | CCNNGG | 3 cut(s) | 157, 255, 363 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 102 |
| Bse118I | RCCGGY | 1 cut(s) | 356 |
| Bse3DI | GCAATG | 1 cut(s) | 251 |
| BseDI | CCNNGG | 3 cut(s) | 157, 255, 363 |
| BseGI | GGATG | 2 cut(s) | 112, 337 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 102 |
| BseMI | GCAATG | 1 cut(s) | 251 |
| BseRI | GAGGAG | 1 cut(s) | 41 |
| BseXI | GCAGC | 4 cut(s) | 214, 228, 305, 331 |
| BsgI | GTGCAG | 1 cut(s) | 221 |
| Bsh1236I | CGCG | 2 cut(s) | 76, 365 |
| BshFI | GGCC | 2 cut(s) | 254, 368 |
| BsiHKAI | GWGCWC | 1 cut(s) | 117 |
| BsiHKCI | CYCGRG | 1 cut(s) | 23 |
| BsiSI | CCGG | 2 cut(s) | 348, 357 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 102 |
| BsmI | GAATGC | 1 cut(s) | 76 |
| BsnI | GGCC | 2 cut(s) | 254, 368 |
| BsoBI | CYCGRG | 1 cut(s) | 23 |
| Bsp1286I | GDGCHC | 1 cut(s) | 117 |
| BspACI | CCGC | 9 cut(s) | 76, 103, 131, 173, 205, 238, 269, 363, 365 |
| BspANI | GGCC | 2 cut(s) | 254, 368 |
| BspFNI | CGCG | 2 cut(s) | 76, 365 |
| BspLI | GGNNCC | 1 cut(s) | 361 |
| BsrDI | GCAATG | 1 cut(s) | 251 |
| BsrFI | RCCGGY | 1 cut(s) | 356 |
| BssAI | RCCGGY | 1 cut(s) | 356 |
| BssECI | CCNNGG | 3 cut(s) | 157, 255, 363 |
| BssNI | GRCGYC | 1 cut(s) | 288 |
| BssT1I | CCWWGG | 2 cut(s) | 157, 255 |
| Bst4CI | ACNGT | 2 cut(s) | 42, 315 |
| Bst6I | CTCTTC | 2 cut(s) | 11, 222 |
| BstACI | GRCGYC | 1 cut(s) | 288 |
| BstC8I | GCNNGC | 4 cut(s) | 35, 83, 154, 171 |
| BstDEI | CTNAG | 1 cut(s) | 177 |
| BstDSI | CCRYGG | 1 cut(s) | 363 |
| BstF5I | GGATG | 2 cut(s) | 112, 337 |
| BstFNI | CGCG | 2 cut(s) | 76, 365 |
| BstHHI | GCGC | 1 cut(s) | 76 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 82, 302, 353, 362 |
| BstUI | CGCG | 2 cut(s) | 76, 365 |
| BstV1I | GCAGC | 4 cut(s) | 214, 228, 305, 331 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 262 |
| BsuRI | GGCC | 2 cut(s) | 254, 368 |
| BtgI | CCRYGG | 1 cut(s) | 363 |
| BtsCI | GGATG | 2 cut(s) | 112, 337 |
| Cac8I | GCNNGC | 4 cut(s) | 35, 83, 154, 171 |
| CfoI | GCGC | 1 cut(s) | 76 |
| Cfr10I | RCCGGY | 1 cut(s) | 356 |
| Cfr13I | GGNCC | 1 cut(s) | 252 |
| Cfr42I | CCGCGG | 1 cut(s) | 366 |
| CseI | GACGC | 1 cut(s) | 277 |
| Csp6I | GTAC | 1 cut(s) | 325 |
| CviQI | GTAC | 1 cut(s) | 325 |
| DdeI | CTNAG | 1 cut(s) | 177 |
| DraI | TTTAAA | 1 cut(s) | 310 |
| EaeI | YGGCCR | 1 cut(s) | 366 |
| Eam1104I | CTCTTC | 2 cut(s) | 11, 222 |
| EarI | CTCTTC | 2 cut(s) | 11, 222 |
| EciI | GGCGGA | 1 cut(s) | 146 |
| Eco130I | CCWWGG | 2 cut(s) | 157, 255 |
| Eco57I | CTGAAG | 3 cut(s) | 158, 246, 358 |
| Eco88I | CYCGRG | 1 cut(s) | 23 |
| EcoT14I | CCWWGG | 2 cut(s) | 157, 255 |
| ErhI | CCWWGG | 2 cut(s) | 157, 255 |
| FauI | CCCGC | 3 cut(s) | 69, 96, 198 |
| Fnu4HI | GCNGC | 7 cut(s) | 174, 203, 239, 242, 294, 345, 366 |
| FokI | GGATG | 2 cut(s) | 119, 344 |
| Fsp4HI | GCNGC | 7 cut(s) | 174, 203, 239, 242, 294, 345, 366 |
| GlaI | GCGC | 1 cut(s) | 75 |
| GluI | GCNGC | 7 cut(s) | 174, 203, 239, 242, 294, 345, 366 |
| GsuI | CTGGAG | 1 cut(s) | 404 |
| HaeIII | GGCC | 2 cut(s) | 254, 368 |
| HapII | CCGG | 2 cut(s) | 348, 357 |
| HgaI | GACGC | 1 cut(s) | 277 |
| HhaI | GCGC | 1 cut(s) | 76 |
| Hin1I | GRCGYC | 1 cut(s) | 288 |
| Hin6I | GCGC | 1 cut(s) | 74 |
| HinP1I | GCGC | 1 cut(s) | 74 |
| HincII | GTYRAC | 1 cut(s) | 61 |
| HindII | GTYRAC | 1 cut(s) | 61 |
| HinfI | GANTC | 1 cut(s) | 209 |
| HpaII | CCGG | 2 cut(s) | 348, 357 |
| HphI | GGTGA | 3 cut(s) | 79, 173, 193 |
| Hpy166II | GTNNAC | 2 cut(s) | 61, 164 |
| Hpy188I | TCNGA | 1 cut(s) | 226 |
| Hpy8I | GTNNAC | 2 cut(s) | 61, 164 |
| Hpy99I | CGWCG | 1 cut(s) | 293 |
| HpyAV | CCTTC | 2 cut(s) | 133, 268 |
| HpyCH4III | ACNGT | 2 cut(s) | 42, 315 |
| HpyCH4V | TGCA | 2 cut(s) | 202, 244 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 82, 302, 353, 362 |
| HpyF3I | CTNAG | 1 cut(s) | 177 |
| Hsp92I | GRCGYC | 1 cut(s) | 288 |
| HspAI | GCGC | 1 cut(s) | 74 |
| KspI | CCGCGG | 1 cut(s) | 366 |
| LmnI | GCTCC | 2 cut(s) | 133, 259 |
| LpnPI | CCDG | 7 cut(s) | 71, 109, 155, 248, 361, 368, 370 |
| Lsp1109I | GCAGC | 4 cut(s) | 214, 228, 305, 331 |
| MboII | GAAGA | 3 cut(s) | 25, 28, 239 |
| MhlI | GDGCHC | 1 cut(s) | 117 |
| MluCI | AATT | 2 cut(s) | 351, 403 |
| MnlI | CCTC | 6 cut(s) | 12, 19, 49, 223, 295, 379 |
| MseI | TTAA | 2 cut(s) | 309, 406 |
| MspA1I | CMGCKG | 3 cut(s) | 169, 205, 365 |
| MspI | CCGG | 2 cut(s) | 348, 357 |
| Mva1269I | GAATGC | 1 cut(s) | 76 |
| MvnI | CGCG | 2 cut(s) | 76, 365 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 82, 302, 353, 362 |
| NlaIV | GGNNCC | 1 cut(s) | 361 |
| PaeR7I | CTCGAG | 1 cut(s) | 23 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 30 |
| PctI | GAATGC | 1 cut(s) | 76 |
| PfeI | GAWTC | 1 cut(s) | 209 |
| PkrI | GCNGC | 7 cut(s) | 175, 204, 240, 243, 295, 346, 367 |
| PspN4I | GGNNCC | 1 cut(s) | 361 |
| PspPI | GGNCC | 1 cut(s) | 252 |
| PspXI | VCTCGAGB | 1 cut(s) | 23 |
| PvuII | CAGCTG | 1 cut(s) | 169 |
| RsaI | GTAC | 1 cut(s) | 326 |
| RsaNI | GTAC | 1 cut(s) | 325 |
| SacII | CCGCGG | 1 cut(s) | 366 |
| SaqAI | TTAA | 2 cut(s) | 309, 406 |
| SatI | GCNGC | 7 cut(s) | 174, 203, 239, 242, 294, 345, 366 |
| Sau96I | GGNCC | 1 cut(s) | 252 |
| SduI | GDGCHC | 1 cut(s) | 117 |
| Sfr274I | CTCGAG | 1 cut(s) | 23 |
| Sfr303I | CCGCGG | 1 cut(s) | 366 |
| SgrBI | CCGCGG | 1 cut(s) | 366 |
| SlaI | CTCGAG | 1 cut(s) | 23 |
| SmlI | CTYRAG | 1 cut(s) | 23 |
| SmoI | CTYRAG | 1 cut(s) | 23 |
| Sse9I | AATT | 2 cut(s) | 351, 403 |
| SsiI | CCGC | 9 cut(s) | 76, 103, 131, 173, 205, 238, 269, 363, 365 |
| SspI | AATATT | 1 cut(s) | 196 |
| StyI | CCWWGG | 2 cut(s) | 157, 255 |
| TaaI | ACNGT | 2 cut(s) | 42, 315 |
| TaqI | TCGA | 2 cut(s) | 24, 317 |
| TasI | AATT | 2 cut(s) | 351, 403 |
| TatI | WGTACW | 1 cut(s) | 324 |
| TauI | GCSGC | 3 cut(s) | 176, 241, 368 |
| TfiI | GAWTC | 1 cut(s) | 209 |
| Tru1I | TTAA | 2 cut(s) | 309, 406 |
| Tru9I | TTAA | 2 cut(s) | 309, 406 |
| TseI | GCWGC | 4 cut(s) | 202, 241, 293, 344 |
| XhoI | CTCGAG | 1 cut(s) | 23 |