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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 200 |
| AccB1I | GGYRCC | 1 cut(s) | 237 |
| AccBSI | CCGCTC | 1 cut(s) | 462 |
| AciI | CCGC | 7 cut(s) | 86, 146, 171, 241, 462, 532, 653 |
| AclWI | GGATC | 1 cut(s) | 283 |
| AcuI | CTGAAG | 1 cut(s) | 613 |
| AfaI | GTAC | 1 cut(s) | 50 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 183, 452, 453, 564, 624 |
| AgsI | TTSAA | 1 cut(s) | 519 |
| AjiI | CACGTC | 1 cut(s) | 97 |
| AjnI | CCWGG | 1 cut(s) | 431 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 286, 318 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 292, 324 |
| AluBI | AGCT | 6 cut(s) | 196, 426, 468, 511, 591, 638 |
| AluI | AGCT | 6 cut(s) | 196, 426, 468, 511, 591, 638 |
| Alw26I | GTCTC | 2 cut(s) | 151, 493 |
| AlwI | GGATC | 1 cut(s) | 283 |
| Ama87I | CYCGRG | 2 cut(s) | 452, 490 |
| AoxI | GGCC | 4 cut(s) | 100, 143, 167, 185 |
| ApaI | GGGCCC | 1 cut(s) | 171 |
| ApeKI | GCWGC | 7 cut(s) | 31, 55, 196, 201, 417, 436, 465 |
| AspLEI | GCGC | 1 cut(s) | 201 |
| AspS9I | GGNCC | 4 cut(s) | 100, 167, 168, 350 |
| AsuC2I | CCSGG | 1 cut(s) | 618 |
| AsuHPI | GGTGA | 1 cut(s) | 371 |
| AvaI | CYCGRG | 2 cut(s) | 452, 490 |
| AvaII | GGWCC | 1 cut(s) | 350 |
| BaeGI | GKGCMC | 2 cut(s) | 86, 171 |
| BanI | GGYRCC | 1 cut(s) | 237 |
| BanII | GRGCYC | 1 cut(s) | 171 |
| BauI | CACGAG | 1 cut(s) | 421 |
| BbvI | GCAGC | 7 cut(s) | 18, 42, 183, 213, 404, 448, 477 |
| BccI | CCATC | 2 cut(s) | 340, 465 |
| BceAI | ACGGC | 1 cut(s) | 380 |
| BciT130I | CCWGG | 1 cut(s) | 433 |
| BcnI | CCSGG | 1 cut(s) | 618 |
| BcoDI | GTCTC | 2 cut(s) | 151, 493 |
| Bme1390I | CCNGG | 2 cut(s) | 433, 618 |
| Bme18I | GGWCC | 1 cut(s) | 350 |
| BmeT110I | CYCGRG | 2 cut(s) | 452, 490 |
| BmgBI | CACGTC | 1 cut(s) | 97 |
| BmgT120I | GGNCC | 4 cut(s) | 100, 167, 168, 350 |
| BmiI | GGNNCC | 3 cut(s) | 169, 239, 351 |
| BmrFI | CCNGG | 2 cut(s) | 433, 618 |
| BmsI | GCATC | 2 cut(s) | 411, 448 |
| Bpu10I | CCTNAGC | 1 cut(s) | 536 |
| BpuEI | CTTGAG | 1 cut(s) | 643 |
| BpuMI | CCSGG | 1 cut(s) | 618 |
| BsaI | GGTCTC | 1 cut(s) | 493 |
| BsaJI | CCNNGG | 2 cut(s) | 451, 656 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 292, 322 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 183, 452, 453, 564, 624 |
| Bse118I | RCCGGY | 1 cut(s) | 34 |
| Bse1I | ACTGG | 1 cut(s) | 18 |
| BseBI | CCWGG | 1 cut(s) | 433 |
| BseDI | CCNNGG | 2 cut(s) | 451, 656 |
| BseGI | GGATG | 1 cut(s) | 351 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 183, 452, 453, 564, 624 |
| BseNI | ACTGG | 1 cut(s) | 18 |
| BseRI | GAGGAG | 2 cut(s) | 88, 490 |
| BseSI | GKGCMC | 2 cut(s) | 86, 171 |
| BseXI | GCAGC | 7 cut(s) | 18, 42, 183, 213, 404, 448, 477 |
| BseYI | CCCAGC | 1 cut(s) | 229 |
| BsgI | GTGCAG | 1 cut(s) | 403 |
| BshFI | GGCC | 4 cut(s) | 102, 145, 169, 187 |
| BshNI | GGYRCC | 1 cut(s) | 237 |
| BsiHKCI | CYCGRG | 2 cut(s) | 452, 490 |
| BsiSI | CCGG | 2 cut(s) | 35, 618 |
| BslFI | GGGAC | 1 cut(s) | 363 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 183, 452, 453, 564, 624 |
| BsmAI | GTCTC | 2 cut(s) | 151, 493 |
| BsmFI | GGGAC | 1 cut(s) | 363 |
| BsnI | GGCC | 4 cut(s) | 102, 145, 169, 187 |
| Bso31I | GGTCTC | 1 cut(s) | 493 |
| BsoBI | CYCGRG | 2 cut(s) | 452, 490 |
| Bsp120I | GGGCCC | 1 cut(s) | 167 |
| Bsp1286I | GDGCHC | 2 cut(s) | 86, 171 |
| Bsp143I | GATC | 2 cut(s) | 21, 288 |
| BspACI | CCGC | 7 cut(s) | 86, 146, 171, 241, 462, 532, 653 |
| BspANI | GGCC | 4 cut(s) | 102, 145, 169, 187 |
| BspLI | GGNNCC | 3 cut(s) | 169, 239, 351 |
| BspPI | GGATC | 1 cut(s) | 283 |
| BspT107I | GGYRCC | 1 cut(s) | 237 |
| BspTNI | GGTCTC | 1 cut(s) | 493 |
| BsrBI | CCGCTC | 1 cut(s) | 462 |
| BsrFI | RCCGGY | 1 cut(s) | 34 |
| BsrI | ACTGG | 1 cut(s) | 18 |
| BssAI | RCCGGY | 1 cut(s) | 34 |
| BssECI | CCNNGG | 2 cut(s) | 451, 656 |
| BssMI | GATC | 2 cut(s) | 21, 288 |
| BssSI | CACGAG | 1 cut(s) | 421 |
| BssT1I | CCWWGG | 1 cut(s) | 656 |
| Bst2BI | CACGAG | 1 cut(s) | 421 |
| Bst2UI | CCWGG | 1 cut(s) | 433 |
| Bst4CI | ACNGT | 4 cut(s) | 213, 354, 383, 585 |
| BstC8I | GCNNGC | 4 cut(s) | 86, 171, 194, 340 |
| BstDEI | CTNAG | 1 cut(s) | 536 |
| BstF5I | GGATG | 1 cut(s) | 351 |
| BstHHI | GCGC | 1 cut(s) | 201 |
| BstKTI | GATC | 2 cut(s) | 24, 291 |
| BstMAI | GTCTC | 2 cut(s) | 151, 493 |
| BstMBI | GATC | 2 cut(s) | 21, 288 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 193, 198, 423 |
| BstNI | CCWGG | 1 cut(s) | 433 |
| BstSCI | CCNGG | 2 cut(s) | 431, 616 |
| BstSLI | GKGCMC | 2 cut(s) | 86, 171 |
| BstV1I | GCAGC | 7 cut(s) | 18, 42, 183, 213, 404, 448, 477 |
| BsuRI | GGCC | 4 cut(s) | 102, 145, 169, 187 |
| BtrI | CACGTC | 1 cut(s) | 97 |
| BtsCI | GGATG | 1 cut(s) | 351 |
| Cac8I | GCNNGC | 4 cut(s) | 86, 171, 194, 340 |
| CfoI | GCGC | 1 cut(s) | 201 |
| Cfr10I | RCCGGY | 1 cut(s) | 34 |
| Cfr13I | GGNCC | 4 cut(s) | 100, 167, 168, 350 |
| Csp6I | GTAC | 1 cut(s) | 49 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 78, 113, 566, 601 |
| CviQI | GTAC | 1 cut(s) | 49 |
| DdeI | CTNAG | 1 cut(s) | 536 |
| DpnI | GATC | 2 cut(s) | 23, 290 |
| DpnII | GATC | 2 cut(s) | 21, 288 |
| Eco130I | CCWWGG | 1 cut(s) | 656 |
| Eco24I | GRGCYC | 1 cut(s) | 171 |
| Eco31I | GGTCTC | 1 cut(s) | 493 |
| Eco32I | GATATC | 1 cut(s) | 555 |
| Eco47I | GGWCC | 1 cut(s) | 350 |
| Eco57I | CTGAAG | 1 cut(s) | 613 |
| Eco88I | CYCGRG | 2 cut(s) | 452, 490 |
| EcoO109I | RGGNCCY | 1 cut(s) | 167 |
| EcoRII | CCWGG | 1 cut(s) | 431 |
| EcoRV | GATATC | 1 cut(s) | 555 |
| EcoT14I | CCWWGG | 1 cut(s) | 656 |
| EcoT38I | GRGCYC | 1 cut(s) | 171 |
| ErhI | CCWWGG | 1 cut(s) | 656 |
| FaiI | YATR | 3 cut(s) | 272, 320, 508 |
| FaqI | GGGAC | 1 cut(s) | 363 |
| FauI | CCCGC | 2 cut(s) | 93, 178 |
| FokI | GGATG | 1 cut(s) | 358 |
| FriOI | GRGCYC | 1 cut(s) | 171 |
| FspI | TGCGCA | 1 cut(s) | 200 |
| GlaI | GCGC | 1 cut(s) | 200 |
| GsaI | CCCAGC | 1 cut(s) | 233 |
| HaeIII | GGCC | 4 cut(s) | 102, 145, 169, 187 |
| HapII | CCGG | 2 cut(s) | 35, 618 |
| HhaI | GCGC | 1 cut(s) | 201 |
| Hin6I | GCGC | 1 cut(s) | 199 |
| HinP1I | GCGC | 1 cut(s) | 199 |
| HinfI | GANTC | 2 cut(s) | 256, 568 |
| HpaII | CCGG | 2 cut(s) | 35, 618 |
| HphI | GGTGA | 1 cut(s) | 371 |
| Hpy188III | TCNNGA | 4 cut(s) | 4, 282, 490, 492 |
| Hpy99I | CGWCG | 2 cut(s) | 98, 366 |
| HpyAV | CCTTC | 4 cut(s) | 177, 489, 513, 540 |
| HpyCH4III | ACNGT | 4 cut(s) | 213, 354, 383, 585 |
| HpyCH4IV | ACGT | 1 cut(s) | 96 |
| HpyCH4V | TGCA | 3 cut(s) | 274, 420, 561 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 193, 198, 423 |
| HpyF3I | CTNAG | 1 cut(s) | 536 |
| HpySE526I | ACGT | 1 cut(s) | 96 |
| HspAI | GCGC | 1 cut(s) | 199 |
| Kzo9I | GATC | 2 cut(s) | 21, 288 |
| LmnI | GCTCC | 2 cut(s) | 522, 588 |
| Lsp1109I | GCAGC | 7 cut(s) | 18, 42, 183, 213, 404, 448, 477 |
| LweI | GCATC | 2 cut(s) | 411, 448 |
| MaeII | ACGT | 1 cut(s) | 96 |
| MaeIII | GTNAC | 1 cut(s) | 377 |
| MalI | GATC | 2 cut(s) | 23, 290 |
| MbiI | CCGCTC | 1 cut(s) | 462 |
| MboI | GATC | 2 cut(s) | 21, 288 |
| MboII | GAAGA | 3 cut(s) | 78, 148, 606 |
| MhlI | GDGCHC | 2 cut(s) | 86, 171 |
| MluCI | AATT | 1 cut(s) | 499 |
| MlyI | GAGTC | 2 cut(s) | 250, 577 |
| MmeI | TCCRAC | 1 cut(s) | 581 |
| MseI | TTAA | 1 cut(s) | 482 |
| MslI | CAYNNNNRTG | 1 cut(s) | 317 |
| MspA1I | CMGCKG | 1 cut(s) | 468 |
| MspI | CCGG | 2 cut(s) | 35, 618 |
| MspR9I | CCNGG | 2 cut(s) | 433, 618 |
| MvaI | CCWGG | 1 cut(s) | 433 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 193, 198, 423 |
| NciI | CCSGG | 1 cut(s) | 618 |
| NdeII | GATC | 2 cut(s) | 21, 288 |
| NlaIV | GGNNCC | 3 cut(s) | 169, 239, 351 |
| NmuCI | GTSAC | 1 cut(s) | 377 |
| NsbI | TGCGCA | 1 cut(s) | 200 |
| PaeR7I | CTCGAG | 1 cut(s) | 490 |
| PleI | GAGTC | 2 cut(s) | 250, 576 |
| PpsI | GAGTC | 2 cut(s) | 250, 576 |
| Psp6I | CCWGG | 1 cut(s) | 431 |
| PspFI | CCCAGC | 1 cut(s) | 229 |
| PspGI | CCWGG | 1 cut(s) | 431 |
| PspN4I | GGNNCC | 3 cut(s) | 169, 239, 351 |
| PspOMI | GGGCCC | 1 cut(s) | 167 |
| PspPI | GGNCC | 4 cut(s) | 100, 167, 168, 350 |
| PvuII | CAGCTG | 1 cut(s) | 468 |
| RsaI | GTAC | 1 cut(s) | 50 |
| RsaNI | GTAC | 1 cut(s) | 49 |
| RseI | CAYNNNNRTG | 1 cut(s) | 317 |
| SaqAI | TTAA | 1 cut(s) | 482 |
| Sau3AI | GATC | 2 cut(s) | 21, 288 |
| Sau96I | GGNCC | 4 cut(s) | 100, 167, 168, 350 |
| SchI | GAGTC | 2 cut(s) | 250, 577 |
| ScrFI | CCNGG | 2 cut(s) | 433, 618 |
| SduI | GDGCHC | 2 cut(s) | 86, 171 |
| SfaNI | GCATC | 2 cut(s) | 411, 448 |
| Sfr274I | CTCGAG | 1 cut(s) | 490 |
| SinI | GGWCC | 1 cut(s) | 350 |
| SlaI | CTCGAG | 1 cut(s) | 490 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 317 |
| SmlI | CTYRAG | 2 cut(s) | 490, 622 |
| SmoI | CTYRAG | 2 cut(s) | 490, 622 |
| Sse9I | AATT | 1 cut(s) | 499 |
| SsiI | CCGC | 7 cut(s) | 86, 146, 171, 241, 462, 532, 653 |
| StyD4I | CCNGG | 2 cut(s) | 431, 616 |
| StyI | CCWWGG | 1 cut(s) | 656 |
| TaaI | ACNGT | 4 cut(s) | 213, 354, 383, 585 |
| TaiI | ACGT | 1 cut(s) | 99 |
| TaqI | TCGA | 2 cut(s) | 361, 491 |
| TasI | AATT | 1 cut(s) | 499 |
| TauI | GCSGC | 5 cut(s) | 148, 243, 465, 535, 655 |
| Tru1I | TTAA | 1 cut(s) | 482 |
| Tru9I | TTAA | 1 cut(s) | 482 |
| TseFI | GTSAC | 1 cut(s) | 377 |
| TseI | GCWGC | 7 cut(s) | 31, 55, 196, 201, 417, 436, 465 |
| Tsp45I | GTSAC | 1 cut(s) | 377 |
| TspGWI | ACGGA | 2 cut(s) | 169, 399 |
| VpaK11BI | GGWCC | 1 cut(s) | 350 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 582 |
| XhoI | CTCGAG | 1 cut(s) | 490 |