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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 607 |
| Acc16I | TGCGCA | 2 cut(s) | 246, 603 |
| Acc36I | ACCTGC | 1 cut(s) | 607 |
| Acc65I | GGTACC | 1 cut(s) | 755 |
| AccB1I | GGYRCC | 4 cut(s) | 183, 539, 632, 755 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 549, 745 |
| AccBSI | CCGCTC | 3 cut(s) | 106, 181, 259 |
| AccI | GTMKAC | 1 cut(s) | 434 |
| AccII | CGCG | 2 cut(s) | 618, 826 |
| AclWI | GGATC | 1 cut(s) | 334 |
| AcoI | YGGCCR | 1 cut(s) | 732 |
| AcuI | CTGAAG | 1 cut(s) | 548 |
| AcyI | GRCGYC | 1 cut(s) | 540 |
| AfaI | GTAC | 2 cut(s) | 470, 757 |
| AfeI | AGCGCT | 1 cut(s) | 775 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 193, 349, 445, 549, 605, 745 |
| AgeI | ACCGGT | 1 cut(s) | 500 |
| AjnI | CCWGG | 3 cut(s) | 96, 275, 744 |
| AluBI | AGCT | 5 cut(s) | 33, 112, 145, 523, 782 |
| AluI | AGCT | 5 cut(s) | 33, 112, 145, 523, 782 |
| Alw26I | GTCTC | 5 cut(s) | 137, 146, 277, 718, 833 |
| AlwI | GGATC | 1 cut(s) | 334 |
| Aor51HI | AGCGCT | 1 cut(s) | 775 |
| AoxI | GGCC | 2 cut(s) | 36, 732 |
| ApeKI | GCWGC | 4 cut(s) | 80, 109, 428, 523 |
| AsiGI | ACCGGT | 1 cut(s) | 500 |
| Asp718I | GGTACC | 1 cut(s) | 755 |
| AspLEI | GCGC | 4 cut(s) | 247, 542, 604, 776 |
| AspS9I | GGNCC | 1 cut(s) | 789 |
| AsuHPI | GGTGA | 3 cut(s) | 337, 388, 404 |
| AvaII | GGWCC | 1 cut(s) | 789 |
| BaeGI | GKGCMC | 2 cut(s) | 48, 637 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 747, 780 |
| BanI | GGYRCC | 4 cut(s) | 183, 539, 632, 755 |
| BbvCI | CCTCAGC | 1 cut(s) | 627 |
| BbvI | GCAGC | 4 cut(s) | 92, 121, 415, 510 |
| BccI | CCATC | 2 cut(s) | 351, 746 |
| BceAI | ACGGC | 2 cut(s) | 224, 238 |
| BciT130I | CCWGG | 3 cut(s) | 98, 277, 746 |
| BclI | TGATCA | 2 cut(s) | 16, 307 |
| BcoDI | GTCTC | 5 cut(s) | 137, 146, 277, 718, 833 |
| BfaI | CTAG | 1 cut(s) | 281 |
| BfmI | CTRYAG | 1 cut(s) | 777 |
| BfoI | RGCGCY | 2 cut(s) | 543, 777 |
| BfuAI | ACCTGC | 1 cut(s) | 607 |
| BisI | GCNGC | 8 cut(s) | 81, 107, 110, 182, 210, 429, 524, 735 |
| BlsI | GCNGC | 8 cut(s) | 82, 108, 111, 183, 211, 430, 525, 736 |
| Bme1390I | CCNGG | 3 cut(s) | 98, 277, 746 |
| Bme18I | GGWCC | 1 cut(s) | 789 |
| BmgT120I | GGNCC | 1 cut(s) | 789 |
| BmiI | GGNNCC | 5 cut(s) | 185, 541, 634, 757, 790 |
| BmrFI | CCNGG | 3 cut(s) | 98, 277, 746 |
| BmrI | ACTGGG | 1 cut(s) | 559 |
| BmsI | GCATC | 6 cut(s) | 100, 163, 196, 205, 569, 841 |
| BmuI | ACTGGG | 1 cut(s) | 559 |
| BpmI | CTGGAG | 3 cut(s) | 119, 259, 407 |
| Bpu10I | CCTNAGC | 3 cut(s) | 113, 372, 627 |
| BsaHI | GRCGYC | 1 cut(s) | 540 |
| BsaI | GGTCTC | 2 cut(s) | 137, 718 |
| BsaJI | CCNNGG | 4 cut(s) | 96, 192, 220, 744 |
| BsaWI | WCCGGW | 2 cut(s) | 500, 829 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 257, 287, 679, 709 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 193, 349, 445, 549, 605, 745 |
| Bse118I | RCCGGY | 1 cut(s) | 500 |
| Bse1I | ACTGG | 2 cut(s) | 554, 808 |
| BseBI | CCWGG | 3 cut(s) | 98, 277, 746 |
| BseDI | CCNNGG | 4 cut(s) | 96, 192, 220, 744 |
| BseGI | GGATG | 4 cut(s) | 91, 178, 560, 757 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 193, 349, 445, 549, 605, 745 |
| BseMII | CTCAG | 5 cut(s) | 127, 477, 618, 695, 716 |
| BseNI | ACTGG | 2 cut(s) | 554, 808 |
| BseRI | GAGGAG | 1 cut(s) | 134 |
| BseSI | GKGCMC | 2 cut(s) | 48, 637 |
| BseXI | GCAGC | 4 cut(s) | 92, 121, 415, 510 |
| Bsh1236I | CGCG | 2 cut(s) | 618, 826 |
| Bsh1285I | CGRYCG | 1 cut(s) | 830 |
| BshFI | GGCC | 2 cut(s) | 38, 734 |
| BshNI | GGYRCC | 4 cut(s) | 183, 539, 632, 755 |
| BshTI | ACCGGT | 1 cut(s) | 500 |
| BsiEI | CGRYCG | 1 cut(s) | 830 |
| BsiSI | CCGG | 3 cut(s) | 501, 668, 830 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 193, 349, 445, 549, 605, 745 |
| BsmAI | GTCTC | 5 cut(s) | 137, 146, 277, 718, 833 |
| BsmI | GAATGC | 1 cut(s) | 726 |
| BsnI | GGCC | 2 cut(s) | 38, 734 |
| Bso31I | GGTCTC | 2 cut(s) | 137, 718 |
| Bsp1286I | GDGCHC | 2 cut(s) | 48, 637 |
| Bsp143I | GATC | 5 cut(s) | 16, 123, 307, 339, 793 |
| Bsp68I | TCGCGA | 1 cut(s) | 826 |
| BspANI | GGCC | 2 cut(s) | 38, 734 |
| BspCNI | CTCAG | 5 cut(s) | 126, 478, 619, 694, 715 |
| BspFNI | CGCG | 2 cut(s) | 618, 826 |
| BspLI | GGNNCC | 5 cut(s) | 185, 541, 634, 757, 790 |
| BspMI | ACCTGC | 1 cut(s) | 607 |
| BspPI | GGATC | 1 cut(s) | 334 |
| BspT107I | GGYRCC | 4 cut(s) | 183, 539, 632, 755 |
| BspTNI | GGTCTC | 2 cut(s) | 137, 718 |
| BsrBI | CCGCTC | 3 cut(s) | 106, 181, 259 |
| BsrFI | RCCGGY | 1 cut(s) | 500 |
| BsrI | ACTGG | 2 cut(s) | 554, 808 |
| BssAI | RCCGGY | 1 cut(s) | 500 |
| BssECI | CCNNGG | 4 cut(s) | 96, 192, 220, 744 |
| BssMI | GATC | 5 cut(s) | 16, 123, 307, 339, 793 |
| BssNI | GRCGYC | 1 cut(s) | 540 |
| BssT1I | CCWWGG | 1 cut(s) | 192 |
| Bst2UI | CCWGG | 3 cut(s) | 98, 277, 746 |
| Bst4CI | ACNGT | 1 cut(s) | 164 |
| Bst6I | CTCTTC | 2 cut(s) | 374, 408 |
| BstACI | GRCGYC | 1 cut(s) | 540 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 599 |
| BstDEI | CTNAG | 8 cut(s) | 113, 156, 363, 372, 486, 627, 681, 702 |
| BstDSI | CCRYGG | 1 cut(s) | 220 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 191 |
| BstF5I | GGATG | 4 cut(s) | 91, 178, 560, 757 |
| BstFNI | CGCG | 2 cut(s) | 618, 826 |
| BstH2I | RGCGCY | 2 cut(s) | 543, 777 |
| BstHHI | GCGC | 4 cut(s) | 247, 542, 604, 776 |
| BstKTI | GATC | 5 cut(s) | 19, 126, 310, 342, 796 |
| BstMAI | GTCTC | 5 cut(s) | 137, 146, 277, 718, 833 |
| BstMBI | GATC | 5 cut(s) | 16, 123, 307, 339, 793 |
| BstMCI | CGRYCG | 1 cut(s) | 830 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 215, 529, 599, 632, 823, 851 |
| BstNI | CCWGG | 3 cut(s) | 98, 277, 746 |
| BstSCI | CCNGG | 3 cut(s) | 96, 275, 744 |
| BstSFI | CTRYAG | 1 cut(s) | 777 |
| BstSLI | GKGCMC | 2 cut(s) | 48, 637 |
| BstUI | CGCG | 2 cut(s) | 618, 826 |
| BstV1I | GCAGC | 4 cut(s) | 92, 121, 415, 510 |
| BstX2I | RGATCY | 1 cut(s) | 339 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 572 |
| BstYI | RGATCY | 1 cut(s) | 339 |
| BsuRI | GGCC | 2 cut(s) | 38, 734 |
| BtgI | CCRYGG | 1 cut(s) | 220 |
| BtsCI | GGATG | 4 cut(s) | 91, 178, 560, 757 |
| BtsIMutI | CAGTG | 1 cut(s) | 710 |
| BtuMI | TCGCGA | 1 cut(s) | 826 |
| BveI | ACCTGC | 1 cut(s) | 607 |
| CfoI | GCGC | 4 cut(s) | 247, 542, 604, 776 |
| Cfr10I | RCCGGY | 1 cut(s) | 500 |
| Cfr13I | GGNCC | 1 cut(s) | 789 |
| CseI | GACGC | 1 cut(s) | 420 |
| Csp6I | GTAC | 2 cut(s) | 469, 756 |
| CspAI | ACCGGT | 1 cut(s) | 500 |
| CviAII | CATG | 4 cut(s) | 65, 269, 311, 425 |
| CviQI | GTAC | 2 cut(s) | 469, 756 |
| DdeI | CTNAG | 8 cut(s) | 113, 156, 363, 372, 486, 627, 681, 702 |
| DinI | GGCGCC | 1 cut(s) | 541 |
| DpnI | GATC | 5 cut(s) | 18, 125, 309, 341, 795 |
| DpnII | GATC | 5 cut(s) | 16, 123, 307, 339, 793 |
| EaeI | YGGCCR | 1 cut(s) | 732 |
| Eam1104I | CTCTTC | 2 cut(s) | 374, 408 |
| EarI | CTCTTC | 2 cut(s) | 374, 408 |
| EciI | GGCGGA | 3 cut(s) | 185, 479, 764 |
| Eco130I | CCWWGG | 1 cut(s) | 192 |
| Eco31I | GGTCTC | 2 cut(s) | 137, 718 |
| Eco47I | GGWCC | 1 cut(s) | 789 |
| Eco47III | AGCGCT | 1 cut(s) | 775 |
| Eco57I | CTGAAG | 1 cut(s) | 548 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 191 |
| EcoRII | CCWGG | 3 cut(s) | 96, 275, 744 |
| EcoT14I | CCWWGG | 1 cut(s) | 192 |
| EgeI | GGCGCC | 1 cut(s) | 541 |
| EheI | GGCGCC | 1 cut(s) | 541 |
| ErhI | CCWWGG | 1 cut(s) | 192 |
| FaeI | CATG | 4 cut(s) | 68, 272, 314, 428 |
| FaiI | YATR | 7 cut(s) | 28, 66, 270, 293, 312, 426, 662 |
| FatI | CATG | 4 cut(s) | 64, 268, 310, 424 |
| FauI | CCCGC | 2 cut(s) | 342, 641 |
| FbaI | TGATCA | 2 cut(s) | 16, 307 |
| FblI | GTMKAC | 1 cut(s) | 434 |
| Fnu4HI | GCNGC | 8 cut(s) | 81, 107, 110, 182, 210, 429, 524, 735 |
| FokI | GGATG | 4 cut(s) | 78, 185, 547, 764 |
| Fsp4HI | GCNGC | 8 cut(s) | 81, 107, 110, 182, 210, 429, 524, 735 |
| FspBI | CTAG | 1 cut(s) | 281 |
| FspI | TGCGCA | 2 cut(s) | 246, 603 |
| GlaI | GCGC | 4 cut(s) | 246, 541, 603, 775 |
| GluI | GCNGC | 8 cut(s) | 81, 107, 110, 182, 210, 429, 524, 735 |
| GsuI | CTGGAG | 3 cut(s) | 119, 259, 407 |
| HaeII | RGCGCY | 2 cut(s) | 543, 777 |
| HaeIII | GGCC | 2 cut(s) | 38, 734 |
| HapII | CCGG | 3 cut(s) | 501, 668, 830 |
| HgaI | GACGC | 1 cut(s) | 420 |
| HhaI | GCGC | 4 cut(s) | 247, 542, 604, 776 |
| Hin1I | GRCGYC | 1 cut(s) | 540 |
| Hin1II | CATG | 4 cut(s) | 68, 272, 314, 428 |
| Hin6I | GCGC | 4 cut(s) | 245, 540, 602, 774 |
| HinP1I | GCGC | 4 cut(s) | 245, 540, 602, 774 |
| HinfI | GANTC | 3 cut(s) | 353, 421, 677 |
| HpaII | CCGG | 3 cut(s) | 501, 668, 830 |
| HphI | GGTGA | 3 cut(s) | 337, 388, 404 |
| Hpy166II | GTNNAC | 1 cut(s) | 435 |
| Hpy188I | TCNGA | 2 cut(s) | 793, 814 |
| Hpy188III | TCNNGA | 2 cut(s) | 136, 825 |
| Hpy8I | GTNNAC | 1 cut(s) | 435 |
| HpyAV | CCTTC | 1 cut(s) | 49 |
| HpyCH4III | ACNGT | 1 cut(s) | 164 |
| HpyCH4IV | ACGT | 1 cut(s) | 252 |
| HpyCH4V | TGCA | 1 cut(s) | 593 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 215, 529, 599, 632, 823, 851 |
| HpyF3I | CTNAG | 8 cut(s) | 113, 156, 363, 372, 486, 627, 681, 702 |
| HpySE526I | ACGT | 1 cut(s) | 252 |
| Hsp92I | GRCGYC | 1 cut(s) | 540 |
| Hsp92II | CATG | 4 cut(s) | 68, 272, 314, 428 |
| HspAI | GCGC | 4 cut(s) | 245, 540, 602, 774 |
| KasI | GGCGCC | 1 cut(s) | 539 |
| KpnI | GGTACC | 1 cut(s) | 759 |
| Ksp22I | TGATCA | 2 cut(s) | 16, 307 |
| Kzo9I | GATC | 5 cut(s) | 16, 123, 307, 339, 793 |
| LmnI | GCTCC | 4 cut(s) | 103, 142, 178, 520 |
| Lsp1109I | GCAGC | 4 cut(s) | 92, 121, 415, 510 |
| LweI | GCATC | 6 cut(s) | 100, 163, 196, 205, 569, 841 |
| MaeI | CTAG | 1 cut(s) | 281 |
| MaeII | ACGT | 1 cut(s) | 252 |
| MalI | GATC | 5 cut(s) | 18, 125, 309, 341, 795 |
| MbiI | CCGCTC | 3 cut(s) | 106, 181, 259 |
| MboI | GATC | 5 cut(s) | 16, 123, 307, 339, 793 |
| MboII | GAAGA | 3 cut(s) | 340, 391, 425 |
| MflI | RGATCY | 1 cut(s) | 339 |
| MhlI | GDGCHC | 2 cut(s) | 48, 637 |
| Mly113I | GGCGCC | 1 cut(s) | 540 |
| MlyI | GAGTC | 1 cut(s) | 671 |
| MspA1I | CMGCKG | 2 cut(s) | 212, 349 |
| MspI | CCGG | 3 cut(s) | 501, 668, 830 |
| MspR9I | CCNGG | 3 cut(s) | 98, 277, 746 |
| Mva1269I | GAATGC | 1 cut(s) | 726 |
| MvaI | CCWGG | 3 cut(s) | 98, 277, 746 |
| MvnI | CGCG | 2 cut(s) | 618, 826 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 215, 529, 599, 632, 823, 851 |
| NarI | GGCGCC | 1 cut(s) | 540 |
| NdeII | GATC | 5 cut(s) | 16, 123, 307, 339, 793 |
| NlaIII | CATG | 4 cut(s) | 68, 272, 314, 428 |
| NlaIV | GGNNCC | 5 cut(s) | 185, 541, 634, 757, 790 |
| NmeAIII | GCCGAG | 2 cut(s) | 14, 795 |
| NruI | TCGCGA | 1 cut(s) | 826 |
| NsbI | TGCGCA | 2 cut(s) | 246, 603 |
| PaqCI | CACCTGC | 1 cut(s) | 607 |
| PctI | GAATGC | 1 cut(s) | 726 |
| PfeI | GAWTC | 2 cut(s) | 353, 421 |
| PflFI | GACNNNGTC | 2 cut(s) | 269, 551 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 549, 745 |
| PinAI | ACCGGT | 1 cut(s) | 500 |
| PkrI | GCNGC | 8 cut(s) | 82, 108, 111, 183, 211, 430, 525, 736 |
| PleI | GAGTC | 1 cut(s) | 671 |
| PluTI | GGCGCC | 1 cut(s) | 543 |
| PpsI | GAGTC | 1 cut(s) | 671 |
| Psp6I | CCWGG | 3 cut(s) | 96, 275, 744 |
| PspGI | CCWGG | 3 cut(s) | 96, 275, 744 |
| PspN4I | GGNNCC | 5 cut(s) | 185, 541, 634, 757, 790 |
| PspPI | GGNCC | 1 cut(s) | 789 |
| PsuI | RGATCY | 1 cut(s) | 339 |
| PsyI | GACNNNGTC | 2 cut(s) | 269, 551 |
| RruI | TCGCGA | 1 cut(s) | 826 |
| RsaI | GTAC | 2 cut(s) | 470, 757 |
| RsaNI | GTAC | 2 cut(s) | 469, 756 |
| SatI | GCNGC | 8 cut(s) | 81, 107, 110, 182, 210, 429, 524, 735 |
| Sau3AI | GATC | 5 cut(s) | 16, 123, 307, 339, 793 |
| Sau96I | GGNCC | 1 cut(s) | 789 |
| SchI | GAGTC | 1 cut(s) | 671 |
| ScrFI | CCNGG | 3 cut(s) | 98, 277, 746 |
| SduI | GDGCHC | 2 cut(s) | 48, 637 |
| SfaNI | GCATC | 6 cut(s) | 100, 163, 196, 205, 569, 841 |
| SfcI | CTRYAG | 1 cut(s) | 777 |
| SfoI | GGCGCC | 1 cut(s) | 541 |
| SinI | GGWCC | 1 cut(s) | 789 |
| SspDI | GGCGCC | 1 cut(s) | 539 |
| SspMI | CTAG | 1 cut(s) | 281 |
| StyD4I | CCNGG | 3 cut(s) | 96, 275, 744 |
| StyI | CCWWGG | 1 cut(s) | 192 |
| TaaI | ACNGT | 1 cut(s) | 164 |
| TaiI | ACGT | 1 cut(s) | 255 |
| TaqI | TCGA | 1 cut(s) | 126 |
| TatI | WGTACW | 1 cut(s) | 468 |
| TauI | GCSGC | 4 cut(s) | 109, 184, 212, 737 |
| TfiI | GAWTC | 2 cut(s) | 353, 421 |
| TscAI | CASTG | 1 cut(s) | 710 |
| TseI | GCWGC | 4 cut(s) | 80, 109, 428, 523 |
| TspGWI | ACGGA | 1 cut(s) | 43 |
| TspRI | CASTG | 1 cut(s) | 710 |
| Tth111I | GACNNNGTC | 2 cut(s) | 269, 551 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 549, 745 |
| VpaK11BI | GGWCC | 1 cut(s) | 789 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 191 |
| XmiI | GTMKAC | 1 cut(s) | 434 |
| XspI | CTAG | 1 cut(s) | 281 |