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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 4 cut(s) | 164, 422, 541, 556 |
| AccI | GTMKAC | 1 cut(s) | 70 |
| AccII | CGCG | 6 cut(s) | 49, 82, 342, 372, 418, 454 |
| AclWI | GGATC | 1 cut(s) | 763 |
| AcoI | YGGCCR | 4 cut(s) | 169, 234, 687, 763 |
| AcvI | CACGTG | 1 cut(s) | 685 |
| AfaI | GTAC | 1 cut(s) | 369 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 154, 696 |
| AflIII | ACRYGT | 1 cut(s) | 682 |
| AjnI | CCWGG | 1 cut(s) | 349 |
| AleI | CACNNNNGTG | 1 cut(s) | 111 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 384, 416 |
| AluBI | AGCT | 1 cut(s) | 679 |
| AluI | AGCT | 1 cut(s) | 679 |
| Alw26I | GTCTC | 3 cut(s) | 257, 596, 727 |
| AlwI | GGATC | 1 cut(s) | 763 |
| Ama87I | CYCGRG | 3 cut(s) | 120, 269, 563 |
| AoxI | GGCC | 8 cut(s) | 116, 169, 234, 436, 510, 542, 687, 763 |
| ApaI | GGGCCC | 1 cut(s) | 120 |
| ApeKI | GCWGC | 3 cut(s) | 186, 617, 659 |
| AspLEI | GCGC | 5 cut(s) | 49, 84, 218, 456, 637 |
| AspS9I | GGNCC | 7 cut(s) | 4, 116, 117, 273, 302, 543, 574 |
| AsuC2I | CCSGG | 3 cut(s) | 155, 173, 578 |
| AsuHPI | GGTGA | 2 cut(s) | 70, 401 |
| AvaI | CYCGRG | 3 cut(s) | 120, 269, 563 |
| AvaII | GGWCC | 4 cut(s) | 4, 273, 302, 574 |
| BaeGI | GKGCMC | 1 cut(s) | 120 |
| BalI | TGGCCA | 1 cut(s) | 689 |
| BanII | GRGCYC | 2 cut(s) | 103, 120 |
| BbrPI | CACGTG | 1 cut(s) | 685 |
| BbvI | GCAGC | 3 cut(s) | 173, 604, 646 |
| BccI | CCATC | 1 cut(s) | 152 |
| BceAI | ACGGC | 2 cut(s) | 648, 750 |
| BciT130I | CCWGG | 1 cut(s) | 351 |
| BcnI | CCSGG | 3 cut(s) | 155, 173, 578 |
| BcoDI | GTCTC | 3 cut(s) | 257, 596, 727 |
| BfaI | CTAG | 1 cut(s) | 440 |
| BfoI | RGCGCY | 2 cut(s) | 219, 638 |
| Bme1390I | CCNGG | 4 cut(s) | 155, 173, 351, 578 |
| Bme18I | GGWCC | 4 cut(s) | 4, 273, 302, 574 |
| BmeT110I | CYCGRG | 3 cut(s) | 120, 269, 563 |
| BmgT120I | GGNCC | 7 cut(s) | 4, 116, 117, 273, 302, 543, 574 |
| BmiI | GGNNCC | 8 cut(s) | 100, 118, 119, 205, 274, 275, 315, 338 |
| BmrFI | CCNGG | 4 cut(s) | 155, 173, 351, 578 |
| BmsI | GCATC | 2 cut(s) | 247, 655 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 321, 353 |
| BpmI | CTGGAG | 2 cut(s) | 49, 642 |
| BpuMI | CCSGG | 3 cut(s) | 155, 173, 578 |
| BsaAI | YACGTR | 1 cut(s) | 685 |
| BsaBI | GATNNNNATC | 1 cut(s) | 468 |
| BsaJI | CCNNGG | 7 cut(s) | 106, 172, 309, 546, 577, 670, 745 |
| BsaWI | WCCGGW | 1 cut(s) | 725 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 723, 753 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 154, 696 |
| Bse8I | GATNNNNATC | 1 cut(s) | 468 |
| BseBI | CCWGG | 1 cut(s) | 351 |
| BseDI | CCNNGG | 7 cut(s) | 106, 172, 309, 546, 577, 670, 745 |
| BseGI | GGATG | 3 cut(s) | 163, 259, 670 |
| BseJI | GATNNNNATC | 1 cut(s) | 468 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 154, 696 |
| BseRI | GAGGAG | 2 cut(s) | 263, 584 |
| BseSI | GKGCMC | 1 cut(s) | 120 |
| BseX3I | CGGCCG | 3 cut(s) | 169, 234, 763 |
| BseXI | GCAGC | 3 cut(s) | 173, 604, 646 |
| BsgI | GTGCAG | 1 cut(s) | 30 |
| Bsh1236I | CGCG | 6 cut(s) | 49, 82, 342, 372, 418, 454 |
| Bsh1285I | CGRYCG | 7 cut(s) | 74, 112, 168, 172, 237, 476, 766 |
| BshFI | GGCC | 8 cut(s) | 118, 171, 236, 438, 512, 544, 689, 765 |
| BsiEI | CGRYCG | 7 cut(s) | 74, 112, 168, 172, 237, 476, 766 |
| BsiHKCI | CYCGRG | 3 cut(s) | 120, 269, 563 |
| BsiSI | CCGG | 7 cut(s) | 154, 172, 190, 207, 233, 577, 726 |
| BsiWI | CGTACG | 1 cut(s) | 367 |
| BslFI | GGGAC | 3 cut(s) | 152, 286, 713 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 154, 696 |
| BsmAI | GTCTC | 3 cut(s) | 257, 596, 727 |
| BsmFI | GGGAC | 3 cut(s) | 152, 286, 713 |
| BsnI | GGCC | 8 cut(s) | 118, 171, 236, 438, 512, 544, 689, 765 |
| BsoBI | CYCGRG | 3 cut(s) | 120, 269, 563 |
| Bsp120I | GGGCCC | 1 cut(s) | 116 |
| Bsp1286I | GDGCHC | 2 cut(s) | 103, 120 |
| Bsp143I | GATC | 4 cut(s) | 15, 469, 715, 755 |
| Bsp19I | CCATGG | 1 cut(s) | 745 |
| Bsp68I | TCGCGA | 1 cut(s) | 418 |
| BspANI | GGCC | 8 cut(s) | 118, 171, 236, 438, 512, 544, 689, 765 |
| BspFNI | CGCG | 6 cut(s) | 49, 82, 342, 372, 418, 454 |
| BspHI | TCATGA | 1 cut(s) | 378 |
| BspLI | GGNNCC | 8 cut(s) | 100, 118, 119, 205, 274, 275, 315, 338 |
| BspPI | GGATC | 1 cut(s) | 763 |
| BsrBI | CCGCTC | 4 cut(s) | 164, 422, 541, 556 |
| BssECI | CCNNGG | 7 cut(s) | 106, 172, 309, 546, 577, 670, 745 |
| BssMI | GATC | 4 cut(s) | 15, 469, 715, 755 |
| BssT1I | CCWWGG | 2 cut(s) | 309, 745 |
| Bst2UI | CCWGG | 1 cut(s) | 351 |
| Bst4CI | ACNGT | 5 cut(s) | 8, 110, 389, 503, 550 |
| Bst6I | CTCTTC | 2 cut(s) | 234, 240 |
| BstBAI | YACGTR | 1 cut(s) | 685 |
| BstC8I | GCNNGC | 6 cut(s) | 54, 103, 344, 420, 539, 677 |
| BstDEI | CTNAG | 1 cut(s) | 606 |
| BstDSI | CCRYGG | 4 cut(s) | 106, 546, 670, 745 |
| BstF5I | GGATG | 3 cut(s) | 163, 259, 670 |
| BstFNI | CGCG | 6 cut(s) | 49, 82, 342, 372, 418, 454 |
| BstH2I | RGCGCY | 2 cut(s) | 219, 638 |
| BstHHI | GCGC | 5 cut(s) | 49, 84, 218, 456, 637 |
| BstKTI | GATC | 4 cut(s) | 18, 472, 718, 758 |
| BstMAI | GTCTC | 3 cut(s) | 257, 596, 727 |
| BstMBI | GATC | 4 cut(s) | 15, 469, 715, 755 |
| BstMCI | CGRYCG | 7 cut(s) | 74, 112, 168, 172, 237, 476, 766 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 53, 343, 369, 665 |
| BstNI | CCWGG | 1 cut(s) | 351 |
| BstSCI | CCNGG | 4 cut(s) | 153, 171, 349, 576 |
| BstSLI | GKGCMC | 1 cut(s) | 120 |
| BstUI | CGCG | 6 cut(s) | 49, 82, 342, 372, 418, 454 |
| BstV1I | GCAGC | 3 cut(s) | 173, 604, 646 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 113 |
| BstZI | CGGCCG | 3 cut(s) | 169, 234, 763 |
| BsuRI | GGCC | 8 cut(s) | 118, 171, 236, 438, 512, 544, 689, 765 |
| BtgI | CCRYGG | 4 cut(s) | 106, 546, 670, 745 |
| BtsCI | GGATG | 3 cut(s) | 163, 259, 670 |
| BtsIMutI | CAGTG | 1 cut(s) | 499 |
| BtuMI | TCGCGA | 1 cut(s) | 418 |
| Cac8I | GCNNGC | 6 cut(s) | 54, 103, 344, 420, 539, 677 |
| CciI | TCATGA | 1 cut(s) | 378 |
| CfoI | GCGC | 5 cut(s) | 49, 84, 218, 456, 637 |
| Cfr13I | GGNCC | 7 cut(s) | 4, 116, 117, 273, 302, 543, 574 |
| CseI | GACGC | 1 cut(s) | 665 |
| Csp6I | GTAC | 1 cut(s) | 368 |
| CviAII | CATG | 3 cut(s) | 379, 719, 746 |
| CviQI | GTAC | 1 cut(s) | 368 |
| DdeI | CTNAG | 1 cut(s) | 606 |
| DpnI | GATC | 4 cut(s) | 17, 471, 717, 757 |
| DpnII | GATC | 4 cut(s) | 15, 469, 715, 755 |
| EaeI | YGGCCR | 4 cut(s) | 169, 234, 687, 763 |
| EagI | CGGCCG | 3 cut(s) | 169, 234, 763 |
| Eam1104I | CTCTTC | 2 cut(s) | 234, 240 |
| EarI | CTCTTC | 2 cut(s) | 234, 240 |
| EciI | GGCGGA | 3 cut(s) | 294, 614, 663 |
| EclXI | CGGCCG | 3 cut(s) | 169, 234, 763 |
| Eco130I | CCWWGG | 2 cut(s) | 309, 745 |
| Eco24I | GRGCYC | 2 cut(s) | 103, 120 |
| Eco47I | GGWCC | 4 cut(s) | 4, 273, 302, 574 |
| Eco52I | CGGCCG | 3 cut(s) | 169, 234, 763 |
| Eco72I | CACGTG | 1 cut(s) | 685 |
| Eco88I | CYCGRG | 3 cut(s) | 120, 269, 563 |
| EcoO109I | RGGNCCY | 2 cut(s) | 117, 273 |
| EcoRII | CCWGG | 1 cut(s) | 349 |
| EcoT14I | CCWWGG | 2 cut(s) | 309, 745 |
| EcoT38I | GRGCYC | 2 cut(s) | 103, 120 |
| ErhI | CCWWGG | 2 cut(s) | 309, 745 |
| FaeI | CATG | 3 cut(s) | 382, 722, 749 |
| FaiI | YATR | 3 cut(s) | 380, 720, 747 |
| FaqI | GGGAC | 3 cut(s) | 152, 286, 713 |
| FatI | CATG | 3 cut(s) | 378, 718, 745 |
| FauI | CCCGC | 7 cut(s) | 45, 110, 284, 418, 436, 549, 690 |
| FblI | GTMKAC | 1 cut(s) | 70 |
| FokI | GGATG | 3 cut(s) | 170, 266, 677 |
| FriOI | GRGCYC | 2 cut(s) | 103, 120 |
| FspBI | CTAG | 1 cut(s) | 440 |
| GlaI | GCGC | 5 cut(s) | 48, 83, 217, 455, 636 |
| GsuI | CTGGAG | 2 cut(s) | 49, 642 |
| HaeII | RGCGCY | 2 cut(s) | 219, 638 |
| HaeIII | GGCC | 8 cut(s) | 118, 171, 236, 438, 512, 544, 689, 765 |
| HapII | CCGG | 7 cut(s) | 154, 172, 190, 207, 233, 577, 726 |
| HgaI | GACGC | 1 cut(s) | 665 |
| HhaI | GCGC | 5 cut(s) | 49, 84, 218, 456, 637 |
| Hin1II | CATG | 3 cut(s) | 382, 722, 749 |
| Hin6I | GCGC | 5 cut(s) | 47, 82, 216, 454, 635 |
| HinP1I | GCGC | 5 cut(s) | 47, 82, 216, 454, 635 |
| HincII | GTYRAC | 1 cut(s) | 71 |
| HindII | GTYRAC | 1 cut(s) | 71 |
| HinfI | GANTC | 4 cut(s) | 177, 229, 265, 354 |
| HpaII | CCGG | 7 cut(s) | 154, 172, 190, 207, 233, 577, 726 |
| HphI | GGTGA | 2 cut(s) | 70, 401 |
| Hpy166II | GTNNAC | 2 cut(s) | 71, 392 |
| Hpy188III | TCNNGA | 6 cut(s) | 28, 271, 379, 417, 517, 586 |
| Hpy8I | GTNNAC | 2 cut(s) | 71, 392 |
| Hpy99I | CGWCG | 1 cut(s) | 659 |
| HpyAV | CCTTC | 6 cut(s) | 57, 83, 283, 490, 523, 607 |
| HpyCH4III | ACNGT | 5 cut(s) | 8, 110, 389, 503, 550 |
| HpyCH4IV | ACGT | 2 cut(s) | 684, 702 |
| HpyCH4V | TGCA | 1 cut(s) | 11 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 53, 343, 369, 665 |
| HpyF3I | CTNAG | 1 cut(s) | 606 |
| HpySE526I | ACGT | 2 cut(s) | 684, 702 |
| Hsp92II | CATG | 3 cut(s) | 382, 722, 749 |
| HspAI | GCGC | 5 cut(s) | 47, 82, 216, 454, 635 |
| KflI | GGGWCCC | 1 cut(s) | 273 |
| Kzo9I | GATC | 4 cut(s) | 15, 469, 715, 755 |
| LmnI | GCTCC | 5 cut(s) | 98, 161, 319, 342, 731 |
| Lsp1109I | GCAGC | 3 cut(s) | 173, 604, 646 |
| LweI | GCATC | 2 cut(s) | 247, 655 |
| MaeI | CTAG | 1 cut(s) | 440 |
| MaeII | ACGT | 2 cut(s) | 684, 702 |
| MaeIII | GTNAC | 1 cut(s) | 497 |
| MalI | GATC | 4 cut(s) | 17, 471, 717, 757 |
| MbiI | CCGCTC | 4 cut(s) | 164, 422, 541, 556 |
| MboI | GATC | 4 cut(s) | 15, 469, 715, 755 |
| MboII | GAAGA | 4 cut(s) | 137, 251, 257, 622 |
| MhlI | GDGCHC | 2 cut(s) | 103, 120 |
| MlsI | TGGCCA | 1 cut(s) | 689 |
| MluCI | AATT | 2 cut(s) | 22, 781 |
| MluNI | TGGCCA | 1 cut(s) | 689 |
| MlyI | GAGTC | 3 cut(s) | 186, 223, 259 |
| Mox20I | TGGCCA | 1 cut(s) | 689 |
| MscI | TGGCCA | 1 cut(s) | 689 |
| MslI | CAYNNNNRTG | 1 cut(s) | 111 |
| Msp20I | TGGCCA | 1 cut(s) | 689 |
| MspI | CCGG | 7 cut(s) | 154, 172, 190, 207, 233, 577, 726 |
| MspR9I | CCNGG | 4 cut(s) | 155, 173, 351, 578 |
| MvaI | CCWGG | 1 cut(s) | 351 |
| MvnI | CGCG | 6 cut(s) | 49, 82, 342, 372, 418, 454 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 53, 343, 369, 665 |
| NciI | CCSGG | 3 cut(s) | 155, 173, 578 |
| NcoI | CCATGG | 1 cut(s) | 745 |
| NdeII | GATC | 4 cut(s) | 15, 469, 715, 755 |
| NlaIII | CATG | 3 cut(s) | 382, 722, 749 |
| NlaIV | GGNNCC | 8 cut(s) | 100, 118, 119, 205, 274, 275, 315, 338 |
| NmeAIII | GCCGAG | 1 cut(s) | 467 |
| NmuCI | GTSAC | 1 cut(s) | 497 |
| NruI | TCGCGA | 1 cut(s) | 418 |
| OliI | CACNNNNGTG | 1 cut(s) | 111 |
| PagI | TCATGA | 1 cut(s) | 378 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 118, 363 |
| PfeI | GAWTC | 1 cut(s) | 354 |
| Pfl23II | CGTACG | 1 cut(s) | 367 |
| PflFI | GACNNNGTC | 1 cut(s) | 300 |
| PleI | GAGTC | 3 cut(s) | 185, 223, 259 |
| PmaCI | CACGTG | 1 cut(s) | 685 |
| PmlI | CACGTG | 1 cut(s) | 685 |
| PpsI | GAGTC | 3 cut(s) | 185, 223, 259 |
| Ppu21I | YACGTR | 1 cut(s) | 685 |
| PpuMI | RGGWCCY | 1 cut(s) | 273 |
| Psp5II | RGGWCCY | 1 cut(s) | 273 |
| Psp6I | CCWGG | 1 cut(s) | 349 |
| PspCI | CACGTG | 1 cut(s) | 685 |
| PspGI | CCWGG | 1 cut(s) | 349 |
| PspLI | CGTACG | 1 cut(s) | 367 |
| PspN4I | GGNNCC | 8 cut(s) | 100, 118, 119, 205, 274, 275, 315, 338 |
| PspOMI | GGGCCC | 1 cut(s) | 116 |
| PspPI | GGNCC | 7 cut(s) | 4, 116, 117, 273, 302, 543, 574 |
| PspPPI | RGGWCCY | 1 cut(s) | 273 |
| PsyI | GACNNNGTC | 1 cut(s) | 300 |
| RruI | TCGCGA | 1 cut(s) | 418 |
| RsaI | GTAC | 1 cut(s) | 369 |
| RsaNI | GTAC | 1 cut(s) | 368 |
| RseI | CAYNNNNRTG | 1 cut(s) | 111 |
| SalI | GTCGAC | 1 cut(s) | 69 |
| Sau3AI | GATC | 4 cut(s) | 15, 469, 715, 755 |
| Sau96I | GGNCC | 7 cut(s) | 4, 116, 117, 273, 302, 543, 574 |
| SchI | GAGTC | 3 cut(s) | 186, 223, 259 |
| ScrFI | CCNGG | 4 cut(s) | 155, 173, 351, 578 |
| SduI | GDGCHC | 2 cut(s) | 103, 120 |
| SetI | ASST | 8 cut(s) | 294, 304, 352, 576, 628, 681, 687, 705 |
| SfaNI | GCATC | 2 cut(s) | 247, 655 |
| SinI | GGWCC | 4 cut(s) | 4, 273, 302, 574 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 111 |
| Sse9I | AATT | 2 cut(s) | 22, 781 |
| SspMI | CTAG | 1 cut(s) | 440 |
| StyD4I | CCNGG | 4 cut(s) | 153, 171, 349, 576 |
| StyI | CCWWGG | 2 cut(s) | 309, 745 |
| TaaI | ACNGT | 5 cut(s) | 8, 110, 389, 503, 550 |
| TaiI | ACGT | 2 cut(s) | 687, 705 |
| TaqI | TCGA | 4 cut(s) | 70, 180, 324, 585 |
| TaqII | GACCGA | 1 cut(s) | 462 |
| TasI | AATT | 2 cut(s) | 22, 781 |
| TfiI | GAWTC | 1 cut(s) | 354 |
| TscAI | CASTG | 1 cut(s) | 506 |
| TseFI | GTSAC | 1 cut(s) | 497 |
| TseI | GCWGC | 3 cut(s) | 186, 617, 659 |
| Tsp45I | GTSAC | 1 cut(s) | 497 |
| TspDTI | ATGAA | 2 cut(s) | 367, 398 |
| TspGWI | ACGGA | 2 cut(s) | 398, 476 |
| TspRI | CASTG | 1 cut(s) | 506 |
| Tth111I | GACNNNGTC | 1 cut(s) | 300 |
| VpaK11BI | GGWCC | 4 cut(s) | 4, 273, 302, 574 |
| XmiI | GTMKAC | 1 cut(s) | 70 |
| XspI | CTAG | 1 cut(s) | 440 |