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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1734 |
| AatII | GACGTC | 2 cut(s) | 1080, 1328 |
| Acc36I | ACCTGC | 1 cut(s) | 1734 |
| AccB1I | GGYRCC | 3 cut(s) | 815, 1025, 1034 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1196, 1504 |
| AccBSI | CCGCTC | 2 cut(s) | 1246, 1429 |
| AccI | GTMKAC | 1 cut(s) | 282 |
| AccII | CGCG | 5 cut(s) | 598, 648, 1359, 1458, 1521 |
| AccIII | TCCGGA | 1 cut(s) | 560 |
| AclWI | GGATC | 3 cut(s) | 133, 1232, 1383 |
| AcoI | YGGCCR | 3 cut(s) | 599, 603, 1064 |
| AcsI | RAATTY | 3 cut(s) | 174, 381, 524 |
| AcuI | CTGAAG | 6 cut(s) | 119, 151, 493, 1499, 1577, 1662 |
| AcyI | GRCGYC | 3 cut(s) | 108, 1077, 1325 |
| AfaI | GTAC | 3 cut(s) | 149, 341, 1738 |
| AflIII | ACRYGT | 2 cut(s) | 186, 1386 |
| AgsI | TTSAA | 2 cut(s) | 529, 1699 |
| AjnI | CCWGG | 4 cut(s) | 22, 294, 468, 628 |
| Alw21I | GWGCWC | 2 cut(s) | 99, 279 |
| Alw26I | GTCTC | 4 cut(s) | 442, 767, 852, 942 |
| AlwI | GGATC | 3 cut(s) | 133, 1232, 1383 |
| Ama87I | CYCGRG | 2 cut(s) | 1006, 1241 |
| Aor13HI | TCCGGA | 1 cut(s) | 560 |
| ApeKI | GCWGC | 6 cut(s) | 391, 866, 1153, 1214, 1471, 1604 |
| ApoI | RAATTY | 3 cut(s) | 174, 381, 524 |
| AspLEI | GCGC | 7 cut(s) | 208, 294, 886, 1361, 1447, 1458, 1521 |
| AspS9I | GGNCC | 7 cut(s) | 242, 1001, 1119, 1258, 1351, 1495, 1590 |
| AsuC2I | CCSGG | 2 cut(s) | 1177, 1573 |
| AsuHPI | GGTGA | 8 cut(s) | 43, 103, 538, 578, 605, 772, 796, 1171 |
| AvaI | CYCGRG | 2 cut(s) | 1006, 1241 |
| AvaII | GGWCC | 3 cut(s) | 1001, 1258, 1590 |
| AxyI | CCTNAGG | 1 cut(s) | 1055 |
| BanI | GGYRCC | 3 cut(s) | 815, 1025, 1034 |
| BanII | GRGCYC | 5 cut(s) | 279, 720, 972, 1310, 1490 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 332, 364 |
| BbsI | GAAGAC | 4 cut(s) | 908, 956, 1115, 1328 |
| Bbv12I | GWGCWC | 2 cut(s) | 99, 279 |
| BbvCI | CCTCAGC | 2 cut(s) | 255, 1368 |
| BbvI | GCAGC | 6 cut(s) | 403, 853, 1165, 1201, 1458, 1591 |
| BccI | CCATC | 8 cut(s) | 196, 775, 1037, 1121, 1269, 1285, 1289, 1648 |
| BceAI | ACGGC | 1 cut(s) | 1289 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 769, 803, 817, 851 |
| BciT130I | CCWGG | 4 cut(s) | 24, 296, 470, 630 |
| BciVI | GTATCC | 1 cut(s) | 568 |
| BclI | TGATCA | 1 cut(s) | 1713 |
| BcnI | CCSGG | 2 cut(s) | 1177, 1573 |
| BcoDI | GTCTC | 4 cut(s) | 442, 767, 852, 942 |
| BfaI | CTAG | 3 cut(s) | 231, 489, 1740 |
| BfmI | CTRYAG | 1 cut(s) | 831 |
| BfoI | RGCGCY | 2 cut(s) | 209, 295 |
| BfuAI | ACCTGC | 1 cut(s) | 1734 |
| BfuI | GTATCC | 1 cut(s) | 568 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 24, 1442 |
| BlpI | GCTNAGC | 1 cut(s) | 726 |
| Bme1390I | CCNGG | 6 cut(s) | 24, 296, 470, 630, 1177, 1573 |
| Bme18I | GGWCC | 3 cut(s) | 1001, 1258, 1590 |
| BmeT110I | CYCGRG | 2 cut(s) | 1006, 1241 |
| BmgT120I | GGNCC | 7 cut(s) | 242, 1001, 1119, 1258, 1351, 1495, 1590 |
| BmrFI | CCNGG | 6 cut(s) | 24, 296, 470, 630, 1177, 1573 |
| BmsI | GCATC | 5 cut(s) | 224, 474, 777, 783, 1093 |
| BpiI | GAAGAC | 4 cut(s) | 908, 956, 1115, 1328 |
| BpmI | CTGGAG | 4 cut(s) | 371, 879, 891, 1617 |
| Bpu10I | CCTNAGC | 3 cut(s) | 255, 959, 1368 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 726 |
| BpuMI | CCSGG | 2 cut(s) | 1177, 1573 |
| BsaAI | YACGTR | 2 cut(s) | 286, 1314 |
| BsaBI | GATNNNNATC | 1 cut(s) | 568 |
| BsaHI | GRCGYC | 3 cut(s) | 108, 1077, 1325 |
| BsaI | GGTCTC | 2 cut(s) | 442, 942 |
| BsaJI | CCNNGG | 9 cut(s) | 103, 295, 596, 1007, 1176, 1347, 1362, 1437, 1491 |
| BsaWI | WCCGGW | 4 cut(s) | 553, 560, 581, 615 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 902, 932, 1310, 1340 |
| Bse118I | RCCGGY | 3 cut(s) | 76, 601, 1529 |
| Bse1I | ACTGG | 6 cut(s) | 542, 613, 759, 822, 1027, 1190 |
| Bse21I | CCTNAGG | 1 cut(s) | 1055 |
| Bse3DI | GCAATG | 2 cut(s) | 672, 978 |
| Bse8I | GATNNNNATC | 1 cut(s) | 568 |
| BseAI | TCCGGA | 1 cut(s) | 560 |
| BseBI | CCWGG | 4 cut(s) | 24, 296, 470, 630 |
| BseDI | CCNNGG | 9 cut(s) | 103, 295, 596, 1007, 1176, 1347, 1362, 1437, 1491 |
| BseGI | GGATG | 4 cut(s) | 465, 1296, 1300, 1426 |
| BseJI | GATNNNNATC | 1 cut(s) | 568 |
| BseMI | GCAATG | 2 cut(s) | 672, 978 |
| BseMII | CTCAG | 6 cut(s) | 246, 740, 846, 953, 1046, 1359 |
| BseNI | ACTGG | 6 cut(s) | 542, 613, 759, 822, 1027, 1190 |
| BseX3I | CGGCCG | 2 cut(s) | 599, 1064 |
| BseXI | GCAGC | 6 cut(s) | 403, 853, 1165, 1201, 1458, 1591 |
| BseYI | CCCAGC | 3 cut(s) | 80, 713, 924 |
| BsgI | GTGCAG | 2 cut(s) | 696, 857 |
| Bsh1236I | CGCG | 5 cut(s) | 598, 648, 1359, 1458, 1521 |
| Bsh1285I | CGRYCG | 3 cut(s) | 326, 602, 1067 |
| BshNI | GGYRCC | 3 cut(s) | 815, 1025, 1034 |
| BsiEI | CGRYCG | 3 cut(s) | 326, 602, 1067 |
| BsiHKAI | GWGCWC | 2 cut(s) | 99, 279 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1006, 1241 |
| BsiWI | CGTACG | 1 cut(s) | 339 |
| BslFI | GGGAC | 3 cut(s) | 1014, 1312, 1736 |
| BsmAI | GTCTC | 4 cut(s) | 442, 767, 852, 942 |
| BsmFI | GGGAC | 3 cut(s) | 1014, 1312, 1736 |
| BsmI | GAATGC | 1 cut(s) | 653 |
| Bso31I | GGTCTC | 2 cut(s) | 442, 942 |
| BsoBI | CYCGRG | 2 cut(s) | 1006, 1241 |
| Bsp1286I | GDGCHC | 6 cut(s) | 99, 279, 720, 972, 1310, 1490 |
| Bsp13I | TCCGGA | 1 cut(s) | 560 |
| Bsp143I | GATC | 6 cut(s) | 138, 421, 569, 1237, 1375, 1713 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 726 |
| Bsp19I | CCATGG | 1 cut(s) | 1437 |
| BspCNI | CTCAG | 6 cut(s) | 247, 739, 847, 952, 1047, 1360 |
| BspEI | TCCGGA | 1 cut(s) | 560 |
| BspFNI | CGCG | 5 cut(s) | 598, 648, 1359, 1458, 1521 |
| BspMI | ACCTGC | 1 cut(s) | 1734 |
| BspPI | GGATC | 3 cut(s) | 133, 1232, 1383 |
| BspQI | GCTCTTC | 1 cut(s) | 1553 |
| BspT107I | GGYRCC | 3 cut(s) | 815, 1025, 1034 |
| BspTNI | GGTCTC | 2 cut(s) | 442, 942 |
| BsrBI | CCGCTC | 2 cut(s) | 1246, 1429 |
| BsrDI | GCAATG | 2 cut(s) | 672, 978 |
| BsrFI | RCCGGY | 3 cut(s) | 76, 601, 1529 |
| BsrI | ACTGG | 6 cut(s) | 542, 613, 759, 822, 1027, 1190 |
| BssAI | RCCGGY | 3 cut(s) | 76, 601, 1529 |
| BssECI | CCNNGG | 9 cut(s) | 103, 295, 596, 1007, 1176, 1347, 1362, 1437, 1491 |
| BssMI | GATC | 6 cut(s) | 138, 421, 569, 1237, 1375, 1713 |
| BssNAI | GTATAC | 1 cut(s) | 283 |
| BssNI | GRCGYC | 3 cut(s) | 108, 1077, 1325 |
| BssT1I | CCWWGG | 4 cut(s) | 103, 1362, 1437, 1491 |
| Bst1107I | GTATAC | 1 cut(s) | 283 |
| Bst2UI | CCWGG | 4 cut(s) | 24, 296, 470, 630 |
| Bst4CI | ACNGT | 4 cut(s) | 250, 832, 955, 1303 |
| Bst6I | CTCTTC | 2 cut(s) | 1325, 1553 |
| BstACI | GRCGYC | 3 cut(s) | 108, 1077, 1325 |
| BstBAI | YACGTR | 2 cut(s) | 286, 1314 |
| BstDEI | CTNAG | 7 cut(s) | 255, 726, 855, 939, 959, 1055, 1368 |
| BstDSI | CCRYGG | 2 cut(s) | 596, 1437 |
| BstEII | GGTNACC | 2 cut(s) | 584, 611 |
| BstF5I | GGATG | 4 cut(s) | 465, 1296, 1300, 1426 |
| BstFNI | CGCG | 5 cut(s) | 598, 648, 1359, 1458, 1521 |
| BstH2I | RGCGCY | 2 cut(s) | 209, 295 |
| BstHHI | GCGC | 7 cut(s) | 208, 294, 886, 1361, 1447, 1458, 1521 |
| BstKTI | GATC | 6 cut(s) | 141, 424, 572, 1240, 1378, 1716 |
| BstMAI | GTCTC | 4 cut(s) | 442, 767, 852, 942 |
| BstMBI | GATC | 6 cut(s) | 138, 421, 569, 1237, 1375, 1713 |
| BstMCI | CGRYCG | 3 cut(s) | 326, 602, 1067 |
| BstNI | CCWGG | 4 cut(s) | 24, 296, 470, 630 |
| BstNSI | RCATGY | 3 cut(s) | 190, 890, 1505 |
| BstPI | GGTNACC | 2 cut(s) | 584, 611 |
| BstSCI | CCNGG | 6 cut(s) | 22, 294, 468, 628, 1175, 1571 |
| BstSFI | CTRYAG | 1 cut(s) | 831 |
| BstUI | CGCG | 5 cut(s) | 598, 648, 1359, 1458, 1521 |
| BstV1I | GCAGC | 6 cut(s) | 403, 853, 1165, 1201, 1458, 1591 |
| BstV2I | GAAGAC | 4 cut(s) | 908, 956, 1115, 1328 |
| BstX2I | RGATCY | 2 cut(s) | 138, 1375 |
| BstYI | RGATCY | 2 cut(s) | 138, 1375 |
| BstZ17I | GTATAC | 1 cut(s) | 283 |
| BstZI | CGGCCG | 2 cut(s) | 599, 1064 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1055 |
| BsuI | GTATCC | 1 cut(s) | 568 |
| BtgI | CCRYGG | 2 cut(s) | 596, 1437 |
| BtgZI | GCGATG | 1 cut(s) | 794 |
| BtsCI | GGATG | 4 cut(s) | 465, 1296, 1300, 1426 |
| BtsI | GCAGTG | 2 cut(s) | 456, 1184 |
| BtsIMutI | CAGTG | 7 cut(s) | 359, 456, 517, 606, 752, 1184, 1308 |
| BveI | ACCTGC | 1 cut(s) | 1734 |
| CciNI | GCGGCCGC | 1 cut(s) | 1064 |
| CfoI | GCGC | 7 cut(s) | 208, 294, 886, 1361, 1447, 1458, 1521 |
| Cfr10I | RCCGGY | 3 cut(s) | 76, 601, 1529 |
| Cfr13I | GGNCC | 7 cut(s) | 242, 1001, 1119, 1258, 1351, 1495, 1590 |
| Cfr42I | CCGCGG | 1 cut(s) | 599 |
| CseI | GACGC | 1 cut(s) | 97 |
| Csp6I | GTAC | 3 cut(s) | 148, 340, 1737 |
| CviAII | CATG | 5 cut(s) | 187, 373, 887, 1438, 1502 |
| CviQI | GTAC | 3 cut(s) | 148, 340, 1737 |
| DdeI | CTNAG | 7 cut(s) | 255, 726, 855, 939, 959, 1055, 1368 |
| DpnI | GATC | 6 cut(s) | 140, 423, 571, 1239, 1377, 1715 |
| DpnII | GATC | 6 cut(s) | 138, 421, 569, 1237, 1375, 1713 |
| EaeI | YGGCCR | 3 cut(s) | 599, 603, 1064 |
| EagI | CGGCCG | 2 cut(s) | 599, 1064 |
| Eam1104I | CTCTTC | 2 cut(s) | 1325, 1553 |
| EarI | CTCTTC | 2 cut(s) | 1325, 1553 |
| EciI | GGCGGA | 3 cut(s) | 89, 857, 1355 |
| Ecl136II | GAGCTC | 1 cut(s) | 277 |
| EclXI | CGGCCG | 2 cut(s) | 599, 1064 |
| Eco130I | CCWWGG | 4 cut(s) | 103, 1362, 1437, 1491 |
| Eco147I | AGGCCT | 3 cut(s) | 1012, 1148, 1619 |
| Eco24I | GRGCYC | 5 cut(s) | 279, 720, 972, 1310, 1490 |
| Eco31I | GGTCTC | 2 cut(s) | 442, 942 |
| Eco47I | GGWCC | 3 cut(s) | 1001, 1258, 1590 |
| Eco52I | CGGCCG | 2 cut(s) | 599, 1064 |
| Eco53kI | GAGCTC | 1 cut(s) | 277 |
| Eco57I | CTGAAG | 6 cut(s) | 119, 151, 493, 1499, 1577, 1662 |
| Eco81I | CCTNAGG | 1 cut(s) | 1055 |
| Eco88I | CYCGRG | 2 cut(s) | 1006, 1241 |
| Eco91I | GGTNACC | 2 cut(s) | 584, 611 |
| EcoICRI | GAGCTC | 1 cut(s) | 277 |
| EcoO109I | RGGNCCY | 4 cut(s) | 1001, 1119, 1351, 1590 |
| EcoO65I | GGTNACC | 2 cut(s) | 584, 611 |
| EcoRI | GAATTC | 1 cut(s) | 381 |
| EcoRII | CCWGG | 4 cut(s) | 22, 294, 468, 628 |
| EcoT14I | CCWWGG | 4 cut(s) | 103, 1362, 1437, 1491 |
| EcoT38I | GRGCYC | 5 cut(s) | 279, 720, 972, 1310, 1490 |
| ErhI | CCWWGG | 4 cut(s) | 103, 1362, 1437, 1491 |
| FaeI | CATG | 5 cut(s) | 190, 376, 890, 1441, 1505 |
| FaqI | GGGAC | 3 cut(s) | 1014, 1312, 1736 |
| FatI | CATG | 5 cut(s) | 186, 372, 886, 1437, 1501 |
| FauI | CCCGC | 3 cut(s) | 976, 979, 1239 |
| FauNDI | CATATG | 1 cut(s) | 1219 |
| FbaI | TGATCA | 1 cut(s) | 1713 |
| FblI | GTMKAC | 1 cut(s) | 282 |
| FokI | GGATG | 4 cut(s) | 452, 1303, 1307, 1433 |
| FriOI | GRGCYC | 5 cut(s) | 279, 720, 972, 1310, 1490 |
| FseI | GGCCGGCC | 1 cut(s) | 605 |
| FspBI | CTAG | 3 cut(s) | 231, 489, 1740 |
| GlaI | GCGC | 7 cut(s) | 207, 293, 885, 1360, 1446, 1457, 1520 |
| GsaI | CCCAGC | 3 cut(s) | 84, 717, 928 |
| GsuI | CTGGAG | 4 cut(s) | 371, 879, 891, 1617 |
| HaeII | RGCGCY | 2 cut(s) | 209, 295 |
| HgaI | GACGC | 1 cut(s) | 97 |
| HhaI | GCGC | 7 cut(s) | 208, 294, 886, 1361, 1447, 1458, 1521 |
| Hin1I | GRCGYC | 3 cut(s) | 108, 1077, 1325 |
| Hin1II | CATG | 5 cut(s) | 190, 376, 890, 1441, 1505 |
| Hin6I | GCGC | 7 cut(s) | 206, 292, 884, 1359, 1445, 1456, 1519 |
| HinP1I | GCGC | 7 cut(s) | 206, 292, 884, 1359, 1445, 1456, 1519 |
| HindIII | AAGCTT | 2 cut(s) | 35, 1647 |
| HphI | GGTGA | 8 cut(s) | 43, 103, 538, 578, 605, 772, 796, 1171 |
| Hpy166II | GTNNAC | 1 cut(s) | 283 |
| Hpy188I | TCNGA | 8 cut(s) | 138, 303, 569, 748, 828, 942, 1270, 1760 |
| Hpy188III | TCNNGA | 8 cut(s) | 231, 317, 561, 896, 1054, 1231, 1241, 1634 |
| Hpy8I | GTNNAC | 1 cut(s) | 283 |
| Hpy99I | CGWCG | 4 cut(s) | 250, 318, 1082, 1330 |
| HpyCH4III | ACNGT | 4 cut(s) | 250, 832, 955, 1303 |
| HpyCH4IV | ACGT | 5 cut(s) | 285, 1077, 1313, 1325, 1386 |
| HpyCH4V | TGCA | 7 cut(s) | 89, 410, 456, 677, 838, 1217, 1474 |
| HpyF3I | CTNAG | 7 cut(s) | 255, 726, 855, 939, 959, 1055, 1368 |
| HpySE526I | ACGT | 5 cut(s) | 285, 1077, 1313, 1325, 1386 |
| Hsp92I | GRCGYC | 3 cut(s) | 108, 1077, 1325 |
| Hsp92II | CATG | 5 cut(s) | 190, 376, 890, 1441, 1505 |
| HspAI | GCGC | 7 cut(s) | 206, 292, 884, 1359, 1445, 1456, 1519 |
| KflI | GGGWCCC | 1 cut(s) | 1001 |
| Kpn2I | TCCGGA | 1 cut(s) | 560 |
| KroI | GCCGGC | 2 cut(s) | 601, 1529 |
| KroNI | GCCGGC | 2 cut(s) | 603, 1531 |
| Ksp22I | TGATCA | 1 cut(s) | 1713 |
| KspI | CCGCGG | 1 cut(s) | 599 |
| Kzo9I | GATC | 6 cut(s) | 138, 421, 569, 1237, 1375, 1713 |
| LguI | GCTCTTC | 1 cut(s) | 1553 |
| LmnI | GCTCC | 6 cut(s) | 102, 490, 967, 1453, 1493, 1543 |
| Lsp1109I | GCAGC | 6 cut(s) | 403, 853, 1165, 1201, 1458, 1591 |
| LweI | GCATC | 5 cut(s) | 224, 474, 777, 783, 1093 |
| MaeI | CTAG | 3 cut(s) | 231, 489, 1740 |
| MaeII | ACGT | 5 cut(s) | 285, 1077, 1313, 1325, 1386 |
| MaeIII | GTNAC | 7 cut(s) | 109, 416, 544, 584, 611, 632, 1165 |
| MalI | GATC | 6 cut(s) | 140, 423, 571, 1239, 1377, 1715 |
| MbiI | CCGCTC | 2 cut(s) | 1246, 1429 |
| MboI | GATC | 6 cut(s) | 138, 421, 569, 1237, 1375, 1713 |
| MfeI | CAATTG | 2 cut(s) | 767, 1717 |
| MflI | RGATCY | 2 cut(s) | 138, 1375 |
| MhlI | GDGCHC | 6 cut(s) | 99, 279, 720, 972, 1310, 1490 |
| MluCI | AATT | 6 cut(s) | 174, 381, 524, 767, 1684, 1717 |
| MlyI | GAGTC | 5 cut(s) | 587, 601, 854, 1199, 1723 |
| MmeI | TCCRAC | 3 cut(s) | 281, 851, 1431 |
| MroI | TCCGGA | 1 cut(s) | 560 |
| MroNI | GCCGGC | 2 cut(s) | 601, 1529 |
| MseI | TTAA | 1 cut(s) | 1140 |
| MspA1I | CMGCKG | 4 cut(s) | 598, 713, 928, 1156 |
| MspR9I | CCNGG | 6 cut(s) | 24, 296, 470, 630, 1177, 1573 |
| MunI | CAATTG | 2 cut(s) | 767, 1717 |
| Mva1269I | GAATGC | 1 cut(s) | 653 |
| MvaI | CCWGG | 4 cut(s) | 24, 296, 470, 630 |
| MvnI | CGCG | 5 cut(s) | 598, 648, 1359, 1458, 1521 |
| NaeI | GCCGGC | 2 cut(s) | 603, 1531 |
| NciI | CCSGG | 2 cut(s) | 1177, 1573 |
| NcoI | CCATGG | 1 cut(s) | 1437 |
| NdeI | CATATG | 1 cut(s) | 1219 |
| NdeII | GATC | 6 cut(s) | 138, 421, 569, 1237, 1375, 1713 |
| NgoMIV | GCCGGC | 2 cut(s) | 601, 1529 |
| NlaIII | CATG | 5 cut(s) | 190, 376, 890, 1441, 1505 |
| NmuCI | GTSAC | 5 cut(s) | 109, 544, 584, 611, 1165 |
| NotI | GCGGCCGC | 1 cut(s) | 1064 |
| NspI | RCATGY | 3 cut(s) | 190, 890, 1505 |
| PaeI | GCATGC | 1 cut(s) | 890 |
| PaqCI | CACCTGC | 1 cut(s) | 1734 |
| PceI | AGGCCT | 3 cut(s) | 1012, 1148, 1619 |
| PciI | ACATGT | 1 cut(s) | 186 |
| PciSI | GCTCTTC | 1 cut(s) | 1553 |
| PctI | GAATGC | 1 cut(s) | 653 |
| PdiI | GCCGGC | 2 cut(s) | 603, 1531 |
| PfeI | GAWTC | 5 cut(s) | 538, 564, 619, 743, 1510 |
| Pfl23II | CGTACG | 1 cut(s) | 339 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1196, 1504 |
| PleI | GAGTC | 5 cut(s) | 586, 600, 853, 1199, 1723 |
| PpsI | GAGTC | 5 cut(s) | 586, 600, 853, 1199, 1723 |
| Ppu21I | YACGTR | 2 cut(s) | 286, 1314 |
| PpuMI | RGGWCCY | 2 cut(s) | 1001, 1590 |
| PscI | ACATGT | 1 cut(s) | 186 |
| Psp124BI | GAGCTC | 1 cut(s) | 279 |
| Psp5II | RGGWCCY | 2 cut(s) | 1001, 1590 |
| Psp6I | CCWGG | 4 cut(s) | 22, 294, 468, 628 |
| PspEI | GGTNACC | 2 cut(s) | 584, 611 |
| PspFI | CCCAGC | 3 cut(s) | 80, 713, 924 |
| PspGI | CCWGG | 4 cut(s) | 22, 294, 468, 628 |
| PspLI | CGTACG | 1 cut(s) | 339 |
| PspPI | GGNCC | 7 cut(s) | 242, 1001, 1119, 1258, 1351, 1495, 1590 |
| PspPPI | RGGWCCY | 2 cut(s) | 1001, 1590 |
| PsuI | RGATCY | 2 cut(s) | 138, 1375 |
| PvuII | CAGCTG | 1 cut(s) | 1156 |
| RigI | GGCCGGCC | 1 cut(s) | 605 |
| RsaI | GTAC | 3 cut(s) | 149, 341, 1738 |
| RsaNI | GTAC | 3 cut(s) | 148, 340, 1737 |
| SacI | GAGCTC | 1 cut(s) | 279 |
| SacII | CCGCGG | 1 cut(s) | 599 |
| SapI | GCTCTTC | 1 cut(s) | 1553 |
| SaqAI | TTAA | 1 cut(s) | 1140 |
| Sau3AI | GATC | 6 cut(s) | 138, 421, 569, 1237, 1375, 1713 |
| Sau96I | GGNCC | 7 cut(s) | 242, 1001, 1119, 1258, 1351, 1495, 1590 |
| SchI | GAGTC | 5 cut(s) | 587, 601, 854, 1199, 1723 |
| ScrFI | CCNGG | 6 cut(s) | 24, 296, 470, 630, 1177, 1573 |
| SduI | GDGCHC | 6 cut(s) | 99, 279, 720, 972, 1310, 1490 |
| SfaNI | GCATC | 5 cut(s) | 224, 474, 777, 783, 1093 |
| SfcI | CTRYAG | 1 cut(s) | 831 |
| Sfr303I | CCGCGG | 1 cut(s) | 599 |
| SgrBI | CCGCGG | 1 cut(s) | 599 |
| SinI | GGWCC | 3 cut(s) | 1001, 1258, 1590 |
| SphI | GCATGC | 1 cut(s) | 890 |
| Sse9I | AATT | 6 cut(s) | 174, 381, 524, 767, 1684, 1717 |
| SseBI | AGGCCT | 3 cut(s) | 1012, 1148, 1619 |
| SspMI | CTAG | 3 cut(s) | 231, 489, 1740 |
| SstI | GAGCTC | 1 cut(s) | 279 |
| StuI | AGGCCT | 3 cut(s) | 1012, 1148, 1619 |
| StyD4I | CCNGG | 6 cut(s) | 22, 294, 468, 628, 1175, 1571 |
| StyI | CCWWGG | 4 cut(s) | 103, 1362, 1437, 1491 |
| TaaI | ACNGT | 4 cut(s) | 250, 832, 955, 1303 |
| TaiI | ACGT | 5 cut(s) | 288, 1080, 1316, 1328, 1389 |
| TaqI | TCGA | 7 cut(s) | 316, 657, 696, 741, 1080, 1328, 1413 |
| TaqII | GACCGA | 2 cut(s) | 340, 1250 |
| TasI | AATT | 6 cut(s) | 174, 381, 524, 767, 1684, 1717 |
| TfiI | GAWTC | 5 cut(s) | 538, 564, 619, 743, 1510 |
| Tru1I | TTAA | 1 cut(s) | 1140 |
| Tru9I | TTAA | 1 cut(s) | 1140 |
| TscAI | CASTG | 7 cut(s) | 366, 463, 517, 613, 759, 1191, 1308 |
| TseFI | GTSAC | 5 cut(s) | 109, 544, 584, 611, 1165 |
| TseI | GCWGC | 6 cut(s) | 391, 866, 1153, 1214, 1471, 1604 |
| Tsp45I | GTSAC | 5 cut(s) | 109, 544, 584, 611, 1165 |
| TspDTI | ATGAA | 2 cut(s) | 17, 254 |
| TspRI | CASTG | 7 cut(s) | 366, 463, 517, 613, 759, 1191, 1308 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1196, 1504 |
| VpaK11BI | GGWCC | 3 cut(s) | 1001, 1258, 1590 |
| XapI | RAATTY | 3 cut(s) | 174, 381, 524 |
| XbaI | TCTAGA | 1 cut(s) | 230 |
| XceI | RCATGY | 3 cut(s) | 190, 890, 1505 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 985, 1369 |
| XmiI | GTMKAC | 1 cut(s) | 282 |
| XspI | CTAG | 3 cut(s) | 231, 489, 1740 |
| ZraI | GACGTC | 2 cut(s) | 1078, 1326 |